Wall clock time and date at job start Mon Mar 30 2020 01:23:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.46846 * 2 1 4 4 H 1.08996 * 109.47282 * 304.99720 * 3 2 1 5 5 F 1.39903 * 109.47355 * 65.00448 * 3 2 1 6 6 C 1.50709 * 109.46580 * 184.99970 * 3 2 1 7 7 O 1.21278 * 120.00339 * 314.99985 * 6 3 2 8 8 N 1.34780 * 119.99503 * 135.00271 * 6 3 2 9 9 C 1.46500 * 119.99587 * 180.02562 * 8 6 3 10 10 C 1.53004 * 109.46866 * 179.97438 * 9 8 6 11 11 H 1.08999 * 109.70979 * 59.84233 * 10 9 8 12 12 C 1.53716 * 109.74353 * 180.61348 * 10 9 8 13 13 O 1.42961 * 109.14524 * 172.16545 * 12 10 9 14 14 C 1.42958 * 114.16834 * 297.28538 * 13 12 10 15 15 C 1.53300 * 109.22174 * 62.57956 * 14 13 12 16 16 N 1.47145 * 108.38367 * 307.70177 * 15 14 13 17 17 C 1.36941 * 120.97954 * 230.50876 * 16 15 14 18 18 H 1.07997 * 119.99744 * 148.92868 * 17 16 15 19 19 C 1.38809 * 120.00047 * 328.92306 * 17 16 15 20 20 N 1.31616 * 120.00315 * 349.26307 * 19 17 16 21 21 Si 1.86807 * 119.99925 * 169.25942 * 19 17 16 22 22 H 1.48499 * 109.46956 * 180.02562 * 21 19 17 23 23 H 1.48495 * 109.46896 * 300.00419 * 21 19 17 24 24 H 1.48496 * 109.46948 * 60.00184 * 21 19 17 25 25 H 1.08991 * 109.47370 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47015 * 300.00227 * 1 2 3 27 27 H 1.09003 * 109.46960 * 59.99748 * 1 2 3 28 28 H 1.08995 * 109.46791 * 240.00055 * 2 1 3 29 29 H 1.08998 * 109.47384 * 120.00035 * 2 1 3 30 30 H 0.96998 * 120.00393 * 359.97438 * 8 6 3 31 31 H 1.09002 * 109.47350 * 59.99870 * 9 8 6 32 32 H 1.08998 * 109.47179 * 299.99291 * 9 8 6 33 33 H 1.08998 * 109.65985 * 52.19631 * 12 10 9 34 34 H 1.09004 * 109.48076 * 292.02296 * 12 10 9 35 35 H 1.09007 * 109.51424 * 302.65910 * 14 13 12 36 36 H 1.08996 * 109.55999 * 182.53029 * 14 13 12 37 37 H 1.09000 * 109.68276 * 187.97667 * 15 14 13 38 38 H 1.09002 * 109.70797 * 67.44037 * 15 14 13 39 39 H 0.96994 * 120.00419 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 9 1.6699 2.0680 1.1955 6 6 3.5420 1.4442 -0.1238 7 8 4.2065 0.6810 0.5446 8 7 4.1467 2.2941 -0.9774 9 6 5.6067 2.2954 -1.0982 10 6 6.0323 3.3449 -2.1270 11 1 5.6930 4.3306 -1.8086 12 6 7.5628 3.3410 -2.2701 13 8 7.9341 4.1903 -3.3585 14 6 7.4397 3.7623 -4.6298 15 6 5.9070 3.7838 -4.6085 16 7 5.4484 3.0193 -3.4379 17 6 4.5019 2.0377 -3.5637 18 1 4.5178 1.1843 -2.9022 19 6 3.5219 2.1398 -4.5415 20 7 3.3691 3.2662 -5.2051 21 14 2.4199 0.6786 -4.9155 22 1 1.4638 1.0424 -5.9919 23 1 3.2522 -0.4681 -5.3600 24 1 1.6681 0.2997 -3.6923 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.6152 2.9043 -1.5123 31 1 5.9454 1.3113 -1.4222 32 1 6.0510 2.5326 -0.1316 33 1 7.9103 2.3265 -2.4648 34 1 8.0149 3.7103 -1.3495 35 1 7.7868 2.7492 -4.8332 36 1 7.8025 4.4344 -5.4074 37 1 5.5208 3.3270 -5.5197 38 1 5.5548 4.8128 -4.5359 39 1 2.6846 3.3374 -5.8886 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673054985.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:31 Heat of formation + Delta-G solvation = -111.703178 kcal Electronic energy + Delta-G solvation = -22749.200031 eV Core-core repulsion = 19220.998792 eV Total energy + Delta-G solvation = -3528.201239 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -47.64615 -39.34336 -38.31960 -35.44046 -33.82031 -33.66358 -31.65862 -30.51570 -27.94027 -27.14334 -25.16906 -23.52059 -22.19615 -21.44666 -20.10413 -19.66877 -17.56172 -16.77346 -16.37592 -16.03091 -15.60698 -15.40084 -14.76623 -14.64755 -14.29993 -14.16735 -13.79327 -13.65976 -13.50303 -13.06291 -12.83183 -12.62958 -12.12838 -11.94321 -11.74568 -11.59436 -11.13477 -11.00671 -10.94449 -10.84509 -10.71216 -10.48265 -10.33962 -10.12310 -9.72448 -9.43453 -9.01724 -8.76375 -8.41462 -6.80766 -5.98571 -3.49227 2.86542 3.19544 3.29037 3.30587 3.46532 4.25739 4.48245 4.63146 4.83920 4.96330 5.03692 5.10900 5.18553 5.44086 5.51773 5.54946 5.67508 5.72701 5.79358 5.95850 5.98256 6.02088 6.10596 6.15938 6.17862 6.25998 6.28159 6.47051 6.68251 6.93406 7.01480 7.43429 7.60507 7.81809 7.99950 8.21117 8.58572 8.97199 9.57636 10.17511 11.07458 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.007466 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.237780 B = 3749.537971 C = 5009.219316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.139 4.139 3 C 0.081 3.919 4 H 0.102 0.898 5 F -0.196 7.196 6 C 0.488 3.512 7 O -0.547 6.547 8 N -0.683 5.683 9 C 0.134 3.866 10 C 0.124 3.876 11 H 0.043 0.957 12 C 0.057 3.943 13 O -0.392 6.392 14 C 0.035 3.965 15 C 0.144 3.856 16 N -0.591 5.591 17 C -0.260 4.260 18 H 0.072 0.928 19 C 0.010 3.990 20 N -0.898 5.898 21 Si 0.896 3.104 22 H -0.289 1.289 23 H -0.282 1.282 24 H -0.279 1.279 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.417 0.583 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.030 0.970 39 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.654 -1.480 5.219 5.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.177 4.177 3 C 0.042 3.958 4 H 0.120 0.880 5 F -0.177 7.177 6 C 0.271 3.729 7 O -0.425 6.425 8 N -0.335 5.335 9 C 0.010 3.990 10 C 0.017 3.983 11 H 0.061 0.939 12 C -0.023 4.023 13 O -0.311 6.311 14 C -0.043 4.043 15 C 0.018 3.982 16 N -0.317 5.317 17 C -0.389 4.389 18 H 0.090 0.910 19 C -0.190 4.190 20 N -0.541 5.541 21 Si 0.725 3.275 22 H -0.214 1.214 23 H -0.209 1.209 24 H -0.205 1.205 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.256 0.744 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.203 -1.776 5.582 5.861 hybrid contribution -1.069 -0.610 -0.705 1.419 sum -1.273 -2.386 4.877 5.576 Atomic orbital electron populations 1.21770 0.94538 1.02276 1.02403 1.21944 0.96950 0.93999 1.04810 1.21628 0.92957 0.95997 0.85216 0.88025 1.92834 1.92232 1.84046 1.48625 1.20767 0.89977 0.81487 0.80697 1.90659 1.66126 1.40278 1.45463 1.46108 1.08385 1.38449 1.40534 1.21226 0.80062 1.00223 0.97532 1.21528 0.92988 0.95998 0.87780 0.93948 1.22934 0.95284 0.94301 0.89745 1.87803 1.75161 1.51855 1.16257 1.23351 0.98095 0.98474 0.84388 1.21422 0.88369 0.95741 0.92631 1.44091 1.46009 1.41638 0.99978 1.19184 1.03968 0.98354 1.17390 0.91009 1.25168 0.97188 0.96324 1.00329 1.69960 1.34484 1.23666 1.26023 0.86481 0.80423 0.82458 0.78140 1.21445 1.20862 1.20493 0.92009 0.92110 0.92260 0.89745 0.89746 0.74403 0.91242 0.92057 0.93446 0.89892 0.94113 0.90207 0.88933 0.95222 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.83 37.16 0.37 -1.46 16 2 C -0.14 -2.00 5.41 -26.73 -0.14 -2.15 16 3 C 0.08 1.30 3.77 -27.88 -0.11 1.19 16 4 H 0.10 1.50 7.99 -51.93 -0.42 1.08 16 5 F -0.20 -3.22 16.75 2.25 0.04 -3.18 16 6 C 0.49 9.04 7.17 -10.98 -0.08 8.96 16 7 O -0.55 -11.50 16.61 5.56 0.09 -11.41 16 8 N -0.68 -12.61 3.78 -60.29 -0.23 -12.84 16 9 C 0.13 2.42 4.46 -4.04 -0.02 2.40 16 10 C 0.12 2.36 3.23 -67.20 -0.22 2.14 16 11 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 12 C 0.06 0.98 6.31 37.53 0.24 1.21 16 13 O -0.39 -7.49 10.74 -35.23 -0.38 -7.87 16 14 C 0.03 0.65 6.99 37.31 0.26 0.92 16 15 C 0.14 3.18 5.37 -3.54 -0.02 3.16 16 16 N -0.59 -13.17 3.03 -164.06 -0.50 -13.67 16 17 C -0.26 -6.16 7.06 -15.06 -0.11 -6.27 16 18 H 0.07 1.72 5.82 -52.49 -0.31 1.42 16 19 C 0.01 0.24 5.06 -17.43 -0.09 0.16 16 20 N -0.90 -23.35 11.13 55.49 0.62 -22.73 16 21 Si 0.90 19.73 29.57 -169.99 -5.03 14.70 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.70 7.94 -51.93 -0.41 0.28 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.08 1.23 8.05 -51.93 -0.42 0.81 16 30 H 0.42 7.95 7.21 -40.82 -0.29 7.65 16 31 H 0.07 1.35 7.56 -51.93 -0.39 0.96 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.09 2.25 6.32 -51.93 -0.33 1.92 16 38 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 LS Contribution 318.18 15.07 4.79 4.79 Total: -1.00 -27.63 318.18 -6.43 -34.06 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -5.93 Total: 7.88 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 0.09 Total: 10.26 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: -0.11 Total: -49.23 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.29 Total: -19.28 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.04 Total: -3.18 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.03 Total: 14.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -27.63 -6.43 -34.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673054985.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.645 kcal (2) G-P(sol) polarization free energy of solvation -27.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds