Wall clock time and date at job start Mon Mar 30 2020 02:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46506 * 120.00259 * 2 1 4 4 C 1.39666 * 120.00266 * 179.97438 * 2 1 3 5 5 C 1.38973 * 120.05143 * 180.02562 * 4 2 1 6 6 C 1.38115 * 120.04078 * 179.97438 * 5 4 2 7 7 C 1.38223 * 120.12363 * 359.74065 * 6 5 4 8 8 C 1.38775 * 120.09092 * 0.51216 * 7 6 5 9 9 O 1.35896 * 120.01418 * 179.76748 * 8 7 6 10 10 C 1.42905 * 117.00039 * 359.72141 * 9 8 7 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47317 * 55.00691 * 11 10 9 13 13 C 1.47200 * 109.47506 * 294.99919 * 11 10 9 14 14 N 7.73816 * 79.03087 * 162.92403 * 2 1 3 15 15 C 1.53009 * 109.46984 * 175.00138 * 11 10 9 16 16 C 1.50697 * 109.47152 * 185.00255 * 15 11 10 17 17 H 1.08002 * 120.00031 * 359.97438 * 16 15 11 18 18 C 1.37878 * 119.99823 * 179.97438 * 16 15 11 19 19 N 1.31515 * 119.99842 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00164 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47497 * 89.99265 * 20 18 16 22 22 H 1.48496 * 109.47237 * 210.00062 * 20 18 16 23 23 H 1.48511 * 109.46820 * 329.99546 * 20 18 16 24 24 C 1.38608 * 119.96584 * 359.49180 * 8 7 6 25 25 H 1.09005 * 109.47391 * 269.99987 * 1 2 3 26 26 H 1.09000 * 109.47454 * 30.00269 * 1 2 3 27 27 H 1.08998 * 109.47503 * 150.00451 * 1 2 3 28 28 H 1.09000 * 109.46843 * 240.00065 * 3 2 1 29 29 H 1.09005 * 109.46487 * 359.97438 * 3 2 1 30 30 H 1.08992 * 109.47404 * 119.99917 * 3 2 1 31 31 H 1.08007 * 119.97959 * 359.95758 * 5 4 2 32 32 H 1.07996 * 119.93752 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.95314 * 180.27801 * 7 6 5 34 34 H 1.09000 * 109.47187 * 300.00222 * 10 9 8 35 35 H 1.09001 * 109.46558 * 60.00270 * 10 9 8 36 36 H 1.09003 * 109.46685 * 305.00467 * 15 11 10 37 37 H 1.08996 * 109.46802 * 64.99886 * 15 11 10 38 38 H 0.97006 * 119.99579 * 180.02562 * 19 18 16 39 39 H 1.08004 * 120.06699 * 180.23176 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2095 0.0005 5 6 3.5530 -1.2107 0.0011 6 6 4.2434 -2.4069 0.0021 7 6 3.5547 -3.6053 0.0081 8 6 2.1670 -3.6104 0.0023 9 8 1.4915 -4.7896 0.0034 10 6 2.2739 -5.9854 0.0044 11 6 1.3459 -7.2019 0.0062 12 1 0.6566 -7.1343 -0.8355 13 6 0.5824 -7.2349 1.2643 14 7 -0.0075 -7.2619 2.2307 15 6 2.1791 -8.4791 -0.1183 16 6 1.2610 -9.6679 -0.2402 17 1 0.1903 -9.5267 -0.2294 18 6 1.7879 -10.9359 -0.3654 19 7 0.9867 -11.9734 -0.4712 20 14 3.6398 -11.1802 -0.3833 21 1 4.1256 -11.3845 1.0050 22 1 3.9740 -12.3711 -1.2050 23 1 4.2919 -9.9791 -0.9643 24 6 1.4703 -2.4121 0.0011 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5137 28 1 2.8241 1.3264 -0.8900 29 1 1.4891 2.0972 -0.0005 30 1 2.8241 1.3265 0.8899 31 1 4.0935 -0.2756 0.0004 32 1 5.3234 -2.4059 0.0030 33 1 4.0974 -4.5391 0.0135 34 1 2.9028 -6.0090 -0.8855 35 1 2.9027 -6.0073 0.8945 36 1 2.8110 -8.4157 -1.0042 37 1 2.8048 -8.5924 0.7669 38 1 1.3574 -12.8655 -0.5590 39 1 0.3903 -2.4141 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153992106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:24 Heat of formation + Delta-G solvation = 18.426677 kcal Electronic energy + Delta-G solvation = -19941.843649 eV Core-core repulsion = 16850.054489 eV Total energy + Delta-G solvation = -3091.789160 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.19448 -38.51108 -36.54711 -35.55887 -33.86487 -32.11936 -30.75923 -29.69661 -28.38390 -27.48720 -25.18873 -23.70048 -22.26638 -21.49988 -20.66985 -18.22760 -17.21257 -17.00028 -16.15526 -16.10530 -15.57870 -15.36620 -15.11657 -14.61711 -14.29118 -13.87942 -13.44271 -13.33936 -12.95237 -12.87093 -12.59942 -12.49986 -12.37894 -12.24225 -12.14530 -11.67623 -11.49953 -11.41867 -11.10686 -10.80992 -10.69407 -10.35693 -10.14379 -9.90432 -9.83367 -9.40096 -8.65822 -8.25968 -7.44654 -6.14529 -4.16270 1.48171 1.60229 2.81827 3.24479 3.31312 3.32285 3.35392 3.61914 3.65746 3.87054 4.34477 4.61241 4.70742 4.77971 4.94550 5.03678 5.12341 5.19561 5.21714 5.22858 5.32103 5.37558 5.39633 5.40554 5.48409 5.60147 5.66458 5.80458 6.03308 6.16846 6.18662 6.38560 6.49967 6.60762 6.83798 7.00452 7.06479 7.28013 7.52063 7.60926 8.34029 8.39705 8.88528 9.44154 10.98353 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.003406 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.259087 B = 8218.708053 C = 8829.854023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.638 5.638 3 C 0.099 3.901 4 C 0.245 3.755 5 C -0.235 4.235 6 C -0.036 4.036 7 C -0.263 4.263 8 C 0.182 3.818 9 O -0.313 6.313 10 C 0.065 3.935 11 C 0.021 3.979 12 H 0.119 0.881 13 C 0.242 3.758 14 N -0.460 5.460 15 C -0.002 4.002 16 C -0.530 4.530 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.895 5.895 20 Si 0.877 3.123 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.262 1.262 24 C -0.234 4.234 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.042 0.958 37 H 0.024 0.976 38 H 0.266 0.734 39 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 25.269 -2.271 26.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.350 5.350 3 C -0.045 4.045 4 C 0.143 3.857 5 C -0.258 4.258 6 C -0.054 4.054 7 C -0.284 4.284 8 C 0.135 3.865 9 O -0.226 6.226 10 C -0.011 4.011 11 C -0.001 4.001 12 H 0.136 0.864 13 C -0.075 4.075 14 N -0.136 5.136 15 C -0.041 4.041 16 C -0.568 4.568 17 H 0.094 0.906 18 C -0.130 4.130 19 N -0.532 5.532 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.187 1.187 24 C -0.257 4.257 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.136 0.864 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 4.995 25.156 -0.832 25.660 hybrid contribution 1.318 -0.406 -0.362 1.426 sum 6.312 24.750 -1.194 25.570 Atomic orbital electron populations 1.21689 0.79444 1.02759 1.01290 1.46289 1.05045 1.03082 1.80621 1.21573 0.96947 0.84738 1.01196 1.17408 0.90885 0.84922 0.92462 1.20478 0.91824 0.98494 1.14967 1.20638 0.99220 0.91307 0.94282 1.21109 0.92981 0.99436 1.14860 1.18658 0.90318 0.85440 0.92066 1.86096 1.36352 1.12408 1.87779 1.23062 0.94001 0.81332 1.02732 1.19028 0.96207 0.94996 0.89847 0.86366 1.28627 0.93198 0.91471 0.94251 1.80874 1.10115 1.10118 1.12527 1.19633 0.95789 0.90546 0.98093 1.20959 0.94571 0.89523 1.51725 0.90590 1.24976 0.98001 0.95857 0.94180 1.69901 1.35069 0.98942 1.49312 0.86819 0.85966 0.78250 0.78540 1.20171 1.21151 1.18651 1.19773 0.99989 0.88721 1.17177 0.93367 0.91643 0.90971 0.92816 0.91022 0.92832 0.86381 0.86008 0.85452 0.89879 0.91351 0.94018 0.95791 0.92451 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.71 10.16 59.84 0.61 1.31 16 2 N -0.64 -6.08 3.41 -187.57 -0.64 -6.72 16 3 C 0.10 0.65 9.40 59.85 0.56 1.21 16 4 C 0.24 2.90 6.55 -83.81 -0.55 2.36 16 5 C -0.24 -2.58 9.31 -39.35 -0.37 -2.94 16 6 C -0.04 -0.39 10.03 -39.63 -0.40 -0.79 16 7 C -0.26 -3.34 9.04 -39.39 -0.36 -3.69 16 8 C 0.18 2.61 6.68 -39.25 -0.26 2.35 16 9 O -0.31 -4.90 9.87 -19.41 -0.19 -5.09 16 10 C 0.06 0.95 4.09 37.16 0.15 1.10 16 11 C 0.02 0.37 2.45 -93.40 -0.23 0.14 16 12 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 13 C 0.24 5.08 13.70 -20.87 -0.29 4.79 16 14 N -0.46 -10.56 18.51 42.02 0.78 -9.78 16 15 C 0.00 -0.04 3.49 -27.88 -0.10 -0.14 16 16 C -0.53 -14.11 9.15 -34.44 -0.32 -14.43 16 17 H 0.08 2.23 7.84 -52.49 -0.41 1.81 16 18 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 19 N -0.89 -26.77 13.96 55.43 0.77 -25.99 16 20 Si 0.88 20.28 27.47 -169.99 -4.67 15.61 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 24 C -0.23 -3.12 9.14 -39.24 -0.36 -3.48 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 27 H 0.07 0.59 6.20 -51.93 -0.32 0.27 16 28 H 0.05 0.33 7.95 -51.93 -0.41 -0.08 16 29 H 0.07 0.33 7.79 -51.93 -0.40 -0.07 16 30 H 0.05 0.34 7.95 -51.93 -0.41 -0.07 16 31 H 0.12 1.05 6.73 -52.48 -0.35 0.70 16 32 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.13 1.46 6.29 -52.48 -0.33 1.13 16 34 H 0.08 1.03 7.67 -51.93 -0.40 0.63 16 35 H 0.07 0.95 7.64 -51.93 -0.40 0.55 16 36 H 0.04 0.81 7.20 -51.93 -0.37 0.43 16 37 H 0.02 0.50 7.57 -51.93 -0.39 0.10 16 38 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 39 H 0.13 1.64 6.14 -52.48 -0.32 1.32 16 LS Contribution 330.17 15.07 4.98 4.98 Total: -1.00 -32.40 330.17 -6.34 -38.74 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -5.38 Total: -1.44 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: -1.99 Total: -10.30 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.91 Total: -42.50 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.19 Total: -5.09 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -4.67 Total: 15.61 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.40 -6.34 -38.74 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153992106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.170 kcal (2) G-P(sol) polarization free energy of solvation -32.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds