Wall clock time and date at job start Mon Mar 30 2020 02:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.46506 * 120.00259 * 2 1 4 4 C 1.39666 * 120.00266 * 179.97438 * 2 1 3 5 5 C 1.38973 * 120.05143 * 180.02562 * 4 2 1 6 6 C 1.38115 * 120.04078 * 179.97438 * 5 4 2 7 7 C 1.38223 * 120.12363 * 359.74065 * 6 5 4 8 8 C 1.38775 * 120.09092 * 0.51216 * 7 6 5 9 9 O 1.35896 * 120.01418 * 179.76748 * 8 7 6 10 10 C 1.42905 * 117.00039 * 359.72141 * 9 8 7 11 11 C 1.52999 * 109.46728 * 179.97438 * 10 9 8 12 12 H 1.09001 * 109.47317 * 55.00691 * 11 10 9 13 13 C 1.47200 * 109.47506 * 294.99919 * 11 10 9 14 14 N 7.73816 * 79.03087 * 162.92403 * 2 1 3 15 15 C 1.53009 * 109.46984 * 175.00138 * 11 10 9 16 16 C 1.50697 * 109.47152 * 185.00255 * 15 11 10 17 17 H 1.08002 * 120.00031 * 359.97438 * 16 15 11 18 18 C 1.37878 * 119.99823 * 179.97438 * 16 15 11 19 19 N 1.31515 * 119.99842 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 120.00164 * 0.02562 * 18 16 15 21 21 H 1.48494 * 109.47497 * 89.99265 * 20 18 16 22 22 H 1.48496 * 109.47237 * 210.00062 * 20 18 16 23 23 H 1.48511 * 109.46820 * 329.99546 * 20 18 16 24 24 C 1.38608 * 119.96584 * 359.49180 * 8 7 6 25 25 H 1.09005 * 109.47391 * 269.99987 * 1 2 3 26 26 H 1.09000 * 109.47454 * 30.00269 * 1 2 3 27 27 H 1.08998 * 109.47503 * 150.00451 * 1 2 3 28 28 H 1.09000 * 109.46843 * 240.00065 * 3 2 1 29 29 H 1.09005 * 109.46487 * 359.97438 * 3 2 1 30 30 H 1.08992 * 109.47404 * 119.99917 * 3 2 1 31 31 H 1.08007 * 119.97959 * 359.95758 * 5 4 2 32 32 H 1.07996 * 119.93752 * 180.02562 * 6 5 4 33 33 H 1.08003 * 119.95314 * 180.27801 * 7 6 5 34 34 H 1.09000 * 109.47187 * 300.00222 * 10 9 8 35 35 H 1.09001 * 109.46558 * 60.00270 * 10 9 8 36 36 H 1.09003 * 109.46685 * 305.00467 * 15 11 10 37 37 H 1.08996 * 109.46802 * 64.99886 * 15 11 10 38 38 H 0.97006 * 119.99579 * 180.02562 * 19 18 16 39 39 H 1.08004 * 120.06699 * 180.23176 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1633 -1.2095 0.0005 5 6 3.5530 -1.2107 0.0011 6 6 4.2434 -2.4069 0.0021 7 6 3.5547 -3.6053 0.0081 8 6 2.1670 -3.6104 0.0023 9 8 1.4915 -4.7896 0.0034 10 6 2.2739 -5.9854 0.0044 11 6 1.3459 -7.2019 0.0062 12 1 0.6566 -7.1343 -0.8355 13 6 0.5824 -7.2349 1.2643 14 7 -0.0075 -7.2619 2.2307 15 6 2.1791 -8.4791 -0.1183 16 6 1.2610 -9.6679 -0.2402 17 1 0.1903 -9.5267 -0.2294 18 6 1.7879 -10.9359 -0.3654 19 7 0.9867 -11.9734 -0.4712 20 14 3.6398 -11.1802 -0.3833 21 1 4.1256 -11.3845 1.0050 22 1 3.9740 -12.3711 -1.2050 23 1 4.2919 -9.9791 -0.9643 24 6 1.4703 -2.4121 0.0011 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5137 28 1 2.8241 1.3264 -0.8900 29 1 1.4891 2.0972 -0.0005 30 1 2.8241 1.3265 0.8899 31 1 4.0935 -0.2756 0.0004 32 1 5.3234 -2.4059 0.0030 33 1 4.0974 -4.5391 0.0135 34 1 2.9028 -6.0090 -0.8855 35 1 2.9027 -6.0073 0.8945 36 1 2.8110 -8.4157 -1.0042 37 1 2.8048 -8.5924 0.7669 38 1 1.3574 -12.8655 -0.5590 39 1 0.3903 -2.4141 0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153992106.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:23 Heat of formation + Delta-G solvation = -1.130538 kcal Electronic energy + Delta-G solvation = -19942.691714 eV Core-core repulsion = 16850.054489 eV Total energy + Delta-G solvation = -3092.637225 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15051 -39.49516 -38.02077 -36.47681 -35.62065 -33.96238 -31.68074 -30.54439 -29.51897 -28.61469 -26.13067 -24.92528 -23.47362 -22.94474 -21.57099 -19.16222 -18.92474 -18.63740 -17.22108 -16.97891 -16.49938 -16.34998 -16.18594 -15.85601 -15.54742 -15.14417 -14.74934 -14.63122 -14.39393 -14.05368 -13.77435 -13.50489 -13.42515 -13.25183 -13.08431 -13.00262 -12.89652 -12.68357 -12.30830 -12.10681 -11.86427 -11.79385 -11.72250 -11.62442 -11.35107 -10.73837 -10.62208 -9.21200 -8.24695 -8.21936 -6.31620 0.59561 0.70743 1.45591 1.46817 1.57714 1.84718 1.95318 2.07760 2.41909 2.47888 2.98103 3.07599 3.15772 3.88252 4.03481 4.18381 4.21404 4.24951 4.37760 4.39066 4.47135 4.49397 4.53843 4.65669 4.72290 4.73567 4.79595 4.90175 4.92571 5.00735 5.17811 5.34225 5.37152 5.50422 5.60582 5.66706 5.75518 6.23647 6.35591 6.47180 6.61222 6.70072 6.78237 7.32750 8.92188 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031657 B = 0.003406 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.259087 B = 8218.708053 C = 8829.854023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.643 5.643 3 C 0.093 3.907 4 C 0.238 3.762 5 C -0.237 4.237 6 C -0.035 4.035 7 C -0.274 4.274 8 C 0.159 3.841 9 O -0.335 6.335 10 C 0.073 3.927 11 C 0.025 3.975 12 H 0.124 0.876 13 C 0.251 3.749 14 N -0.504 5.504 15 C 0.001 3.999 16 C -0.534 4.534 17 H 0.028 0.972 18 C 0.003 3.997 19 N -0.954 5.954 20 Si 0.948 3.052 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.217 1.217 24 C -0.256 4.256 25 H 0.047 0.953 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.140 0.860 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.115 0.885 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.034 0.966 38 H 0.265 0.735 39 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.453 27.841 -2.968 29.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.354 5.354 3 C -0.049 4.049 4 C 0.134 3.866 5 C -0.260 4.260 6 C -0.053 4.053 7 C -0.295 4.295 8 C 0.113 3.887 9 O -0.249 6.249 10 C -0.003 4.003 11 C 0.003 3.997 12 H 0.142 0.858 13 C -0.065 4.065 14 N -0.181 5.181 15 C -0.038 4.038 16 C -0.572 4.572 17 H 0.047 0.953 18 C -0.194 4.194 19 N -0.594 5.594 20 Si 0.771 3.229 21 H -0.201 1.201 22 H -0.216 1.216 23 H -0.140 1.140 24 C -0.280 4.280 25 H 0.066 0.934 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.133 0.867 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.222 27.797 -1.533 29.028 hybrid contribution 0.177 -1.087 -0.140 1.110 sum 8.399 26.710 -1.673 28.049 Atomic orbital electron populations 1.21788 0.78873 1.03463 1.01468 1.46586 1.05756 1.03325 1.79740 1.21775 0.97541 0.83966 1.01653 1.17618 0.91610 0.85292 0.92065 1.20804 0.91529 0.99603 1.14016 1.21010 1.00695 0.90696 0.92931 1.21314 0.92255 1.00744 1.15152 1.18888 0.91289 0.84896 0.93651 1.86030 1.37267 1.13080 1.88475 1.22971 0.92842 0.79727 1.04768 1.19091 0.96355 0.95863 0.88358 0.85827 1.29371 0.92521 0.90147 0.94496 1.80862 1.11488 1.11628 1.14147 1.19571 0.95285 0.89151 0.99765 1.21327 0.93531 0.91934 1.50414 0.95320 1.26057 1.04002 0.95414 0.93896 1.70091 1.37896 0.99652 1.51802 0.85694 0.78947 0.79650 0.78623 1.20136 1.21630 1.13952 1.19902 0.99969 0.89504 1.18584 0.93442 0.89190 0.92041 0.92136 0.88958 0.92449 0.84192 0.83160 0.84155 0.86740 0.90343 0.90771 0.94782 0.92575 0.86059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.25 10.16 127.77 1.30 2.55 16 2 N -0.64 -11.13 3.41 -747.35 -2.55 -13.68 16 3 C 0.09 0.97 9.40 127.77 1.20 2.17 16 4 C 0.24 5.29 6.55 38.20 0.25 5.54 16 5 C -0.24 -4.57 9.31 22.42 0.21 -4.36 16 6 C -0.03 -0.66 10.03 22.24 0.22 -0.44 16 7 C -0.27 -6.26 9.04 22.39 0.20 -6.05 16 8 C 0.16 4.38 6.68 22.49 0.15 4.53 16 9 O -0.33 -10.16 9.87 -92.39 -0.91 -11.07 16 10 C 0.07 1.94 4.09 71.98 0.29 2.24 16 11 C 0.02 0.86 2.45 -12.60 -0.03 0.83 16 12 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 13 C 0.25 10.62 13.70 89.48 1.23 11.85 16 14 N -0.50 -23.68 18.51 19.96 0.37 -23.31 16 15 C 0.00 0.03 3.49 29.85 0.10 0.13 16 16 C -0.53 -28.68 9.15 25.60 0.23 -28.45 16 17 H 0.03 1.75 7.84 -2.91 -0.02 1.73 16 18 C 0.00 0.17 5.47 84.65 0.46 0.63 16 19 N -0.95 -58.96 13.96 21.45 0.30 -58.66 16 20 Si 0.95 40.57 27.47 68.60 1.88 42.46 16 21 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.22 -7.71 6.54 99.48 0.65 -7.06 16 24 C -0.26 -6.79 9.14 22.49 0.21 -6.58 16 25 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.09 0.83 7.92 -2.39 -0.02 0.81 16 27 H 0.06 1.01 6.20 -2.39 -0.01 1.00 16 28 H 0.06 0.56 7.95 -2.39 -0.02 0.55 16 29 H 0.09 0.58 7.79 -2.38 -0.02 0.56 16 30 H 0.06 0.57 7.95 -2.39 -0.02 0.55 16 31 H 0.14 2.00 6.73 -2.91 -0.02 1.98 16 32 H 0.15 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.14 2.71 6.29 -2.91 -0.02 2.70 16 34 H 0.11 2.36 7.67 -2.39 -0.02 2.34 16 35 H 0.08 1.95 7.64 -2.39 -0.02 1.93 16 36 H 0.07 2.53 7.20 -2.39 -0.02 2.51 16 37 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 38 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 39 H 0.12 3.22 6.14 -2.91 -0.02 3.20 16 Total: -1.00 -73.28 330.17 6.12 -67.16 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.99 Total: 12.50 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 6.03 Total: -15.40 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -1.88 Total: -95.65 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: -0.91 Total: -11.07 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.88 Total: 42.46 kcal Total: -73.28 6.12 -67.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153992106.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.033 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds