Wall clock time and date at job start Mon Mar 30 2020 01:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99786 * 2 1 4 4 O 1.21593 * 120.00298 * 180.02562 * 3 2 1 5 5 N 1.34785 * 119.99881 * 0.02562 * 3 2 1 6 6 C 1.39960 * 119.99828 * 185.30462 * 5 3 2 7 7 C 1.39286 * 119.94583 * 144.37414 * 6 5 3 8 8 C 1.38489 * 120.42634 * 179.97438 * 7 6 5 9 9 C 1.37682 * 120.32264 * 359.97438 * 8 7 6 10 10 C 1.40739 * 119.88441 * 0.02562 * 9 8 7 11 11 C 1.41412 * 120.21163 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99892 * 146.36304 * 11 10 9 13 13 C 1.39928 * 119.99647 * 326.36254 * 11 10 9 14 14 N 1.30828 * 120.00470 * 356.93722 * 13 11 10 15 15 Si 1.86801 * 119.99774 * 176.94159 * 13 11 10 16 16 H 1.48498 * 109.47413 * 59.99581 * 15 13 11 17 17 H 1.48506 * 109.47322 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46840 * 299.99718 * 15 13 11 19 19 C 1.38237 * 119.94512 * 324.09337 * 6 5 3 20 20 C 1.46499 * 120.00509 * 180.02562 * 2 1 3 21 21 C 1.53775 * 113.61413 * 313.91521 * 20 2 1 22 22 C 1.53950 * 87.02267 * 89.22670 * 21 20 2 23 23 C 1.53778 * 87.11166 * 25.36150 * 22 21 20 24 24 H 1.09004 * 109.46926 * 264.29963 * 1 2 3 25 25 H 1.08993 * 109.47533 * 24.30423 * 1 2 3 26 26 H 1.09000 * 109.47219 * 144.31029 * 1 2 3 27 27 H 0.96993 * 119.99677 * 5.29549 * 5 3 2 28 28 H 1.08000 * 119.78699 * 359.97227 * 7 6 5 29 29 H 1.07992 * 119.83798 * 180.02562 * 8 7 6 30 30 H 1.08002 * 120.05802 * 179.97438 * 9 8 7 31 31 H 0.96993 * 120.00219 * 180.02562 * 14 13 11 32 32 H 1.08000 * 120.16111 * 359.97438 * 19 6 5 33 33 H 1.09002 * 112.85290 * 182.71423 * 20 2 1 34 34 H 1.08999 * 113.61601 * 203.74876 * 21 20 2 35 35 H 1.09007 * 113.61667 * 334.64915 * 21 20 2 36 36 H 1.09001 * 113.53666 * 270.81280 * 22 21 20 37 37 H 1.08998 * 113.67025 * 139.93605 * 22 21 20 38 38 H 1.09004 * 113.61568 * 220.09126 * 23 22 21 39 39 H 1.09004 * 113.69159 * 89.20008 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3548 1.1673 -0.0005 5 7 1.4648 2.3345 0.0005 6 6 2.1601 3.5440 -0.1115 7 6 1.6011 4.6040 -0.8214 8 6 2.2801 5.8054 -0.9381 9 6 3.5159 5.9652 -0.3527 10 6 4.0932 4.9028 0.3677 11 6 5.3619 5.0595 0.9723 12 1 5.5817 4.5591 1.9038 13 6 6.3325 5.8628 0.3636 14 7 6.0878 6.4207 -0.7943 15 14 7.9778 6.1387 1.2041 16 1 8.6606 4.8341 1.3959 17 1 8.8235 7.0201 0.3596 18 1 7.7573 6.7809 2.5248 19 6 3.3978 3.6865 0.4874 20 6 2.1976 -1.2687 -0.0006 21 6 1.6594 -2.2912 1.0140 22 6 0.7138 -2.7778 -0.0993 23 6 1.7463 -2.2400 -1.1041 24 1 -0.3633 -0.1021 1.0226 25 1 -0.3634 0.9365 -0.4229 26 1 -0.3634 -0.8347 -0.5995 27 1 0.4980 2.3361 0.0784 28 1 0.6320 4.4884 -1.2838 29 1 1.8376 6.6212 -1.4904 30 1 4.0419 6.9038 -0.4468 31 1 6.7608 6.9772 -1.2164 32 1 3.8298 2.8668 1.0422 33 1 3.2782 -1.1335 0.0471 34 1 2.3962 -3.0351 1.3170 35 1 1.1425 -1.8371 1.8595 36 1 -0.2379 -2.2470 -0.1249 37 1 0.5965 -3.8610 -0.1313 38 1 1.2997 -1.7445 -1.9661 39 1 2.5076 -2.9689 -1.3823 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334980708.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:44 Heat of formation + Delta-G solvation = 32.970275 kcal Electronic energy + Delta-G solvation = -20847.206159 eV Core-core repulsion = 17756.047656 eV Total energy + Delta-G solvation = -3091.158503 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.56714 -38.74780 -37.01665 -34.47138 -33.89560 -32.68220 -29.72323 -27.98362 -27.67434 -25.76880 -25.21785 -24.41638 -21.71789 -20.88167 -19.91300 -18.83861 -18.06940 -17.29553 -16.20843 -15.52347 -15.37042 -15.01429 -14.88512 -14.52660 -14.01347 -13.53199 -13.23512 -12.88608 -12.74921 -12.57361 -12.46443 -12.34470 -12.08384 -11.65449 -11.17610 -11.08030 -10.82838 -10.67534 -10.58181 -10.43214 -10.35829 -10.05340 -9.73439 -9.44776 -9.05368 -8.83534 -8.51484 -7.29894 -6.80817 -6.53007 -4.27976 2.73772 2.87120 3.02584 3.15669 3.19364 3.27734 3.68751 4.06637 4.23648 4.44771 4.52982 4.77124 4.78610 4.84397 4.95404 5.27457 5.45528 5.54672 5.57250 5.74119 5.77903 5.79373 5.87095 5.88835 6.11096 6.27822 6.42948 6.59662 6.85470 6.93137 7.11267 7.20013 7.31374 7.39899 7.75216 7.85631 8.04521 8.19422 8.33336 8.45125 8.76033 8.97782 9.06185 9.10121 10.40563 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.024827 B = 0.004350 C = 0.003850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.539347 B = 6435.627450 C = 7271.820139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.618 5.618 3 C 0.700 3.300 4 O -0.560 6.560 5 N -0.680 5.680 6 C 0.158 3.842 7 C -0.253 4.253 8 C -0.098 4.098 9 C -0.161 4.161 10 C 0.117 3.883 11 C -0.461 4.461 12 H 0.074 0.926 13 C 0.072 3.928 14 N -0.812 5.812 15 Si 0.913 3.087 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.266 1.266 19 C -0.199 4.199 20 C 0.138 3.862 21 C -0.152 4.152 22 C -0.153 4.153 23 C -0.154 4.154 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.080 0.920 27 H 0.394 0.606 28 H 0.088 0.912 29 H 0.092 0.908 30 H 0.122 0.878 31 H 0.277 0.723 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.053 -12.889 0.844 17.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.356 5.356 3 C 0.402 3.598 4 O -0.435 6.435 5 N -0.328 5.328 6 C 0.066 3.934 7 C -0.275 4.275 8 C -0.117 4.117 9 C -0.181 4.181 10 C 0.114 3.886 11 C -0.492 4.492 12 H 0.093 0.907 13 C -0.143 4.143 14 N -0.439 5.439 15 Si 0.738 3.262 16 H -0.191 1.191 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.221 4.221 20 C 0.033 3.967 21 C -0.190 4.190 22 C -0.189 4.189 23 C -0.192 4.192 24 H 0.072 0.928 25 H 0.086 0.914 26 H 0.098 0.902 27 H 0.229 0.771 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.140 0.860 31 H 0.088 0.912 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -10.033 -12.747 0.655 16.235 hybrid contribution 0.112 0.045 0.166 0.206 sum -9.922 -12.702 0.822 16.139 Atomic orbital electron populations 1.21966 0.80719 1.03008 1.01772 1.46682 1.05700 1.04308 1.78915 1.15907 0.85521 0.80150 0.78181 1.90976 1.11170 1.85399 1.55948 1.42713 1.09464 1.04068 1.76593 1.17283 0.93872 0.83140 0.99106 1.20070 1.01683 0.95563 1.10157 1.20484 0.95758 0.95499 0.99939 1.21447 0.93887 0.99893 1.02867 1.17541 0.91849 0.89237 0.89960 1.19468 0.96762 1.25269 1.07729 0.90742 1.25829 1.00564 0.93552 0.94319 1.69766 1.35178 1.25272 1.13660 0.86296 0.81066 0.79016 0.79811 1.19123 1.20470 1.19057 1.21238 0.96172 0.97851 1.06830 1.21700 0.97777 0.81606 0.95616 1.23345 0.99550 0.98709 0.97423 1.23245 0.98190 1.00817 0.96697 1.23354 0.99352 0.98916 0.97614 0.92760 0.91421 0.90150 0.77099 0.89393 0.89001 0.86029 0.91177 0.86856 0.87275 0.89150 0.91120 0.89372 0.91579 0.91147 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 8.94 59.85 0.54 1.20 16 2 N -0.62 -8.81 3.09 -178.73 -0.55 -9.37 16 3 C 0.70 13.65 8.12 -86.91 -0.71 12.94 16 4 O -0.56 -13.61 13.25 5.28 0.07 -13.54 16 5 N -0.68 -12.84 5.17 -14.27 -0.07 -12.91 16 6 C 0.16 3.70 6.28 -83.76 -0.53 3.18 16 7 C -0.25 -5.68 9.97 -39.10 -0.39 -6.07 16 8 C -0.10 -2.32 10.02 -39.69 -0.40 -2.72 16 9 C -0.16 -4.32 8.64 -38.84 -0.34 -4.66 16 10 C 0.12 3.30 5.52 -106.85 -0.59 2.71 16 11 C -0.46 -13.06 9.05 -37.74 -0.34 -13.40 16 12 H 0.07 2.04 7.85 -52.49 -0.41 1.63 16 13 C 0.07 1.93 5.35 -17.35 -0.09 1.83 16 14 N -0.81 -22.13 10.80 55.55 0.60 -21.53 16 15 Si 0.91 19.94 29.56 -169.99 -5.02 14.91 16 16 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 17 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 C -0.20 -5.35 8.43 -38.69 -0.33 -5.68 16 20 C 0.14 1.77 4.49 -67.12 -0.30 1.47 16 21 C -0.15 -1.47 7.52 -25.83 -0.19 -1.66 16 22 C -0.15 -1.24 7.44 -25.83 -0.19 -1.43 16 23 C -0.15 -1.53 7.42 -25.92 -0.19 -1.72 16 24 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.62 6.15 -51.93 -0.32 0.30 16 26 H 0.08 0.63 4.88 -51.93 -0.25 0.38 16 27 H 0.39 5.80 6.51 -40.82 -0.27 5.54 16 28 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 29 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 30 H 0.12 3.35 6.31 -52.49 -0.33 3.02 16 31 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 32 H 0.11 3.17 6.25 -52.49 -0.33 2.85 16 33 H 0.11 1.68 7.16 -51.93 -0.37 1.30 16 34 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.71 8.12 -51.93 -0.42 0.28 16 36 H 0.09 0.64 5.12 -51.93 -0.27 0.38 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 39 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -32.34 313.81 -9.36 -41.71 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: -5.06 Total: 9.99 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -4.05 Total: -13.99 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.03 Total: -43.81 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.07 Total: -13.54 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -32.34 -9.36 -41.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334980708.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.676 kcal (2) G-P(sol) polarization free energy of solvation -32.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds