Wall clock time and date at job start Mon Mar 30 2020 01:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47097 * 2 1 4 4 C 1.36936 * 119.99980 * 264.64140 * 3 2 1 5 5 H 1.07999 * 120.00017 * 146.23283 * 4 3 2 6 6 C 1.38808 * 119.99945 * 326.23364 * 4 3 2 7 7 N 1.31610 * 120.00088 * 337.61867 * 6 4 3 8 8 Si 1.86802 * 119.99543 * 157.62023 * 6 4 3 9 9 H 1.48499 * 109.47310 * 90.00205 * 8 6 4 10 10 H 1.48508 * 109.46943 * 209.99664 * 8 6 4 11 11 H 1.48492 * 109.47426 * 329.99792 * 8 6 4 12 12 C 1.46504 * 119.99955 * 84.64035 * 3 2 1 13 13 H 1.09000 * 110.43545 * 358.91655 * 12 3 2 14 14 C 1.54859 * 110.58320 * 236.30132 * 12 3 2 15 15 C 1.54481 * 101.65525 * 216.45861 * 14 12 3 16 16 N 1.46762 * 105.55245 * 25.43515 * 15 14 12 17 17 C 1.39929 * 124.34820 * 162.90997 * 16 15 14 18 18 C 1.38870 * 120.06659 * 173.87368 * 17 16 15 19 19 C 1.38114 * 119.92558 * 179.68254 * 18 17 16 20 20 C 1.38288 * 120.06914 * 0.61836 * 19 18 17 21 21 C 1.38278 * 120.14095 * 359.68327 * 20 19 18 22 22 C 1.38115 * 120.07090 * 359.97438 * 21 20 19 23 23 C 1.34415 * 111.30173 * 342.93833 * 16 15 14 24 24 O 1.21290 * 124.94402 * 180.38333 * 23 16 15 25 25 H 1.09007 * 109.47100 * 59.99965 * 1 2 3 26 26 H 1.09004 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47351 * 300.00115 * 1 2 3 28 28 H 1.08998 * 109.46967 * 240.00318 * 2 1 3 29 29 H 1.08996 * 109.46652 * 120.00274 * 2 1 3 30 30 H 0.97005 * 120.00023 * 180.02562 * 7 6 4 31 31 H 1.08994 * 111.03565 * 98.36787 * 14 12 3 32 32 H 1.08997 * 110.99534 * 334.53154 * 14 12 3 33 33 H 1.08995 * 110.24618 * 266.38587 * 15 14 12 34 34 H 1.09007 * 110.23934 * 144.47957 * 15 14 12 35 35 H 1.08001 * 120.03612 * 359.97438 * 18 17 16 36 36 H 1.07998 * 119.96875 * 180.34399 * 19 18 17 37 37 H 1.07998 * 119.92481 * 179.69636 * 20 19 18 38 38 H 1.08003 * 119.96630 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.03453 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3510 1.9898 -1.1807 5 1 2.1844 3.0493 -1.3078 6 6 2.9023 1.2450 -2.2142 7 7 3.5073 0.1056 -1.9542 8 14 2.7853 1.8601 -3.9742 9 1 3.9679 2.7034 -4.2835 10 1 2.7475 0.7013 -4.9021 11 1 1.5478 2.6646 -4.1362 12 6 2.1508 2.1113 1.2632 13 1 1.8273 1.4895 2.0979 14 6 1.3354 3.4272 1.2196 15 6 2.2463 4.3854 2.0187 16 7 3.6034 3.8436 1.8821 17 6 4.7721 4.5645 2.1513 18 6 6.0059 3.9283 2.1152 19 6 7.1582 4.6441 2.3749 20 6 7.0830 5.9901 2.6832 21 6 5.8554 6.6251 2.7261 22 6 4.7001 5.9165 2.4604 23 6 3.5795 2.5662 1.4645 24 8 4.5606 1.8784 1.2761 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8929 -0.4148 -2.6764 31 1 0.3702 3.3058 1.7112 32 1 1.2085 3.7741 0.1941 33 1 1.9500 4.4005 3.0675 34 1 2.1972 5.3902 1.5988 35 1 6.0648 2.8759 1.8796 36 1 8.1186 4.1512 2.3416 37 1 7.9851 6.5465 2.8907 38 1 5.8000 7.6765 2.9667 39 1 3.7416 6.4131 2.4936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000371635428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:03 Heat of formation + Delta-G solvation = 27.594525 kcal Electronic energy + Delta-G solvation = -21633.311625 eV Core-core repulsion = 18541.920012 eV Total energy + Delta-G solvation = -3091.391613 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.45814 -38.23641 -35.97242 -35.47854 -32.35121 -31.24133 -30.64256 -29.22451 -28.08876 -26.35335 -24.06111 -22.80020 -22.45592 -20.91242 -20.38275 -19.10888 -17.21745 -16.62086 -16.08345 -15.87804 -15.19851 -14.60307 -14.23528 -13.85683 -13.71366 -13.57802 -13.17643 -13.09360 -12.90973 -12.56949 -12.27460 -12.18854 -11.85751 -11.47919 -11.32428 -11.10886 -10.90552 -10.77137 -10.69061 -10.61525 -10.08497 -9.99882 -9.78009 -9.59909 -8.95292 -8.69628 -8.41238 -7.48573 -6.66860 -5.82724 -3.38643 1.60725 1.67920 3.24132 3.34428 3.41802 3.43531 3.45685 4.17483 4.42953 4.91571 4.98738 5.14192 5.18039 5.22443 5.37639 5.46357 5.51741 5.63253 5.68912 5.77897 5.85254 5.96736 6.00675 6.25333 6.27877 6.35539 6.48245 6.57571 6.64170 6.65089 6.69949 6.81424 6.84054 6.96193 7.21558 7.49260 7.63694 7.71867 7.76250 8.42295 8.91006 9.10599 9.72498 10.27255 11.18004 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.006169 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.170365 B = 4537.628917 C = 5107.070203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.140 3.860 3 N -0.554 5.554 4 C -0.271 4.271 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.871 5.871 8 Si 0.897 3.103 9 H -0.286 1.286 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.145 3.855 13 H 0.089 0.911 14 C -0.145 4.145 15 C 0.103 3.897 16 N -0.571 5.571 17 C 0.185 3.815 18 C -0.162 4.162 19 C -0.091 4.091 20 C -0.163 4.163 21 C -0.095 4.095 22 C -0.172 4.172 23 C 0.506 3.494 24 O -0.486 6.486 25 H 0.050 0.950 26 H 0.036 0.964 27 H 0.033 0.967 28 H 0.101 0.899 29 H 0.022 0.978 30 H 0.256 0.744 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.155 0.845 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.801 9.175 9.510 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 N -0.272 5.272 4 C -0.400 4.400 5 H 0.081 0.919 6 C -0.183 4.183 7 N -0.512 5.512 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.032 3.968 13 H 0.107 0.893 14 C -0.185 4.185 15 C -0.020 4.020 16 N -0.296 5.296 17 C 0.090 3.910 18 C -0.182 4.182 19 C -0.110 4.110 20 C -0.183 4.183 21 C -0.114 4.114 22 C -0.194 4.194 23 C 0.293 3.707 24 O -0.356 6.356 25 H 0.069 0.931 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.119 0.881 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.173 0.827 36 H 0.139 0.861 37 H 0.134 0.866 38 H 0.137 0.863 39 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.218 8.544 9.245 12.648 hybrid contribution 0.085 0.529 -0.944 1.086 sum -1.133 9.074 8.301 12.350 Atomic orbital electron populations 1.22322 1.00434 0.98911 1.00490 1.21032 0.89838 0.85412 1.02288 1.43809 1.72341 1.11661 0.99412 1.18889 1.37201 0.94222 0.89706 0.91869 1.25137 0.96110 0.97732 0.99287 1.70044 1.34573 1.15388 1.31178 0.86414 0.78140 0.78068 0.84849 1.21253 1.21315 1.20185 1.21249 0.89397 0.93479 0.92639 0.89323 1.23124 0.97746 0.95847 1.01786 1.22122 0.80824 0.98623 1.00391 1.46216 1.05042 1.14070 1.64241 1.17988 0.86209 0.90959 0.95883 1.21743 0.90602 1.03056 1.02831 1.21028 0.97903 0.94114 0.97952 1.20983 0.97415 0.95153 1.04706 1.20820 0.92135 0.99136 0.99295 1.20735 0.99091 0.92495 1.07031 1.22737 0.94384 0.79780 0.73792 1.90542 1.39780 1.58040 1.47264 0.93083 0.94502 0.94806 0.88100 0.95905 0.93432 0.90097 0.88788 0.91282 0.90837 0.82728 0.86147 0.86642 0.86318 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.07 10.23 37.16 0.38 -2.69 16 2 C 0.14 3.22 5.91 -4.04 -0.02 3.20 16 3 N -0.55 -13.29 2.48 -165.53 -0.41 -13.70 16 4 C -0.27 -7.20 8.45 -15.06 -0.13 -7.33 16 5 H 0.06 1.67 6.63 -52.49 -0.35 1.32 16 6 C 0.02 0.53 4.92 -17.44 -0.09 0.45 16 7 N -0.87 -25.41 11.34 55.49 0.63 -24.79 16 8 Si 0.90 21.62 29.61 -169.99 -5.03 16.58 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 12 C 0.15 2.94 3.46 -67.81 -0.23 2.71 16 13 H 0.09 1.64 7.93 -51.93 -0.41 1.23 16 14 C -0.15 -2.31 6.77 -24.97 -0.17 -2.48 16 15 C 0.10 1.47 6.51 -3.12 -0.02 1.45 16 16 N -0.57 -10.58 3.14 -112.27 -0.35 -10.93 16 17 C 0.19 3.33 6.60 -83.69 -0.55 2.78 16 18 C -0.16 -3.03 9.29 -39.39 -0.37 -3.40 16 19 C -0.09 -1.41 10.04 -39.61 -0.40 -1.80 16 20 C -0.16 -2.18 10.04 -39.55 -0.40 -2.58 16 21 C -0.10 -1.24 10.04 -39.61 -0.40 -1.64 16 22 C -0.17 -2.53 9.42 -39.39 -0.37 -2.90 16 23 C 0.51 11.27 6.98 -10.86 -0.08 11.20 16 24 O -0.49 -12.83 14.81 5.55 0.08 -12.75 16 25 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 2.66 5.34 -51.93 -0.28 2.39 16 29 H 0.02 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.68 6.36 -51.93 -0.33 1.35 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.92 7.23 -51.93 -0.38 0.54 16 35 H 0.16 3.34 5.26 -52.49 -0.28 3.07 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 39 H 0.12 1.49 6.74 -52.49 -0.35 1.13 16 LS Contribution 318.09 15.07 4.79 4.79 Total: -1.00 -31.94 318.09 -8.44 -40.38 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.31 Total: 3.44 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -2.84 Total: -3.04 kcal Atomic # 7 Polarization: -49.28 SS G_CDS: -0.13 Total: -49.41 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.94 -8.44 -40.38 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371635428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.972 kcal (2) G-P(sol) polarization free energy of solvation -31.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds