Wall clock time and date at job start Mon Mar 30 2020 01:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47097 * 2 1 4 4 C 1.36936 * 119.99980 * 264.64140 * 3 2 1 5 5 H 1.07999 * 120.00017 * 146.23283 * 4 3 2 6 6 C 1.38808 * 119.99945 * 326.23364 * 4 3 2 7 7 N 1.31610 * 120.00088 * 337.61867 * 6 4 3 8 8 Si 1.86802 * 119.99543 * 157.62023 * 6 4 3 9 9 H 1.48499 * 109.47310 * 90.00205 * 8 6 4 10 10 H 1.48508 * 109.46943 * 209.99664 * 8 6 4 11 11 H 1.48492 * 109.47426 * 329.99792 * 8 6 4 12 12 C 1.46504 * 119.99955 * 84.64035 * 3 2 1 13 13 H 1.09000 * 110.43545 * 358.91655 * 12 3 2 14 14 C 1.54859 * 110.58320 * 236.30132 * 12 3 2 15 15 C 1.54481 * 101.65525 * 216.45861 * 14 12 3 16 16 N 1.46762 * 105.55245 * 25.43515 * 15 14 12 17 17 C 1.39929 * 124.34820 * 162.90997 * 16 15 14 18 18 C 1.38870 * 120.06659 * 173.87368 * 17 16 15 19 19 C 1.38114 * 119.92558 * 179.68254 * 18 17 16 20 20 C 1.38288 * 120.06914 * 0.61836 * 19 18 17 21 21 C 1.38278 * 120.14095 * 359.68327 * 20 19 18 22 22 C 1.38115 * 120.07090 * 359.97438 * 21 20 19 23 23 C 1.34415 * 111.30173 * 342.93833 * 16 15 14 24 24 O 1.21290 * 124.94402 * 180.38333 * 23 16 15 25 25 H 1.09007 * 109.47100 * 59.99965 * 1 2 3 26 26 H 1.09004 * 109.47169 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47351 * 300.00115 * 1 2 3 28 28 H 1.08998 * 109.46967 * 240.00318 * 2 1 3 29 29 H 1.08996 * 109.46652 * 120.00274 * 2 1 3 30 30 H 0.97005 * 120.00023 * 180.02562 * 7 6 4 31 31 H 1.08994 * 111.03565 * 98.36787 * 14 12 3 32 32 H 1.08997 * 110.99534 * 334.53154 * 14 12 3 33 33 H 1.08995 * 110.24618 * 266.38587 * 15 14 12 34 34 H 1.09007 * 110.23934 * 144.47957 * 15 14 12 35 35 H 1.08001 * 120.03612 * 359.97438 * 18 17 16 36 36 H 1.07998 * 119.96875 * 180.34399 * 19 18 17 37 37 H 1.07998 * 119.92481 * 179.69636 * 20 19 18 38 38 H 1.08003 * 119.96630 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.03453 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3510 1.9898 -1.1807 5 1 2.1844 3.0493 -1.3078 6 6 2.9023 1.2450 -2.2142 7 7 3.5073 0.1056 -1.9542 8 14 2.7853 1.8601 -3.9742 9 1 3.9679 2.7034 -4.2835 10 1 2.7475 0.7013 -4.9021 11 1 1.5478 2.6646 -4.1362 12 6 2.1508 2.1113 1.2632 13 1 1.8273 1.4895 2.0979 14 6 1.3354 3.4272 1.2196 15 6 2.2463 4.3854 2.0187 16 7 3.6034 3.8436 1.8821 17 6 4.7721 4.5645 2.1513 18 6 6.0059 3.9283 2.1152 19 6 7.1582 4.6441 2.3749 20 6 7.0830 5.9901 2.6832 21 6 5.8554 6.6251 2.7261 22 6 4.7001 5.9165 2.4604 23 6 3.5795 2.5662 1.4645 24 8 4.5606 1.8784 1.2761 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8929 -0.4148 -2.6764 31 1 0.3702 3.3058 1.7112 32 1 1.2085 3.7741 0.1941 33 1 1.9500 4.4005 3.0675 34 1 2.1972 5.3902 1.5988 35 1 6.0648 2.8759 1.8796 36 1 8.1186 4.1512 2.3416 37 1 7.9851 6.5465 2.8907 38 1 5.8000 7.6765 2.9667 39 1 3.7416 6.4131 2.4936 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371635428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:02 Heat of formation + Delta-G solvation = 8.372024 kcal Electronic energy + Delta-G solvation = -21634.145175 eV Core-core repulsion = 18541.920012 eV Total energy + Delta-G solvation = -3092.225163 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.90372 -39.53209 -37.72034 -37.09555 -33.95956 -32.98982 -31.82073 -30.78480 -29.45374 -28.01029 -25.84023 -24.05281 -23.78873 -22.52479 -21.83372 -20.62667 -18.70193 -18.32025 -17.52301 -17.23184 -16.96994 -16.15354 -15.76134 -15.40750 -15.15266 -15.06496 -14.66795 -14.47546 -14.29191 -14.13474 -13.77661 -13.65772 -13.38546 -13.05892 -12.84738 -12.60084 -12.50509 -12.38267 -12.18729 -12.04891 -12.00990 -11.64580 -11.44964 -11.01297 -10.73900 -10.32315 -9.87192 -8.79667 -8.60864 -7.85925 -5.44687 0.38577 0.48124 1.40781 1.42321 1.52052 1.75024 2.04334 2.47032 2.96116 3.20396 3.50522 3.64134 3.84546 4.08173 4.15270 4.20233 4.26367 4.34559 4.53261 4.56601 4.57244 4.62375 4.68542 4.79686 4.93630 4.97797 5.13421 5.17223 5.17696 5.33001 5.36841 5.51413 5.53112 5.65622 5.65976 5.75378 5.86600 6.18769 6.27248 6.41215 7.11439 7.30960 7.79038 8.29485 9.11670 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.006169 C = 0.005481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.170365 B = 4537.628917 C = 5107.070203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.136 3.864 3 N -0.569 5.569 4 C -0.261 4.261 5 H 0.064 0.936 6 C -0.041 4.041 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.295 1.295 10 H -0.290 1.290 11 H -0.259 1.259 12 C 0.134 3.866 13 H 0.104 0.896 14 C -0.129 4.129 15 C 0.101 3.899 16 N -0.570 5.570 17 C 0.151 3.849 18 C -0.200 4.200 19 C -0.102 4.102 20 C -0.153 4.153 21 C -0.087 4.087 22 C -0.163 4.163 23 C 0.490 3.510 24 O -0.549 6.549 25 H 0.039 0.961 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.016 0.984 30 H 0.248 0.752 31 H 0.121 0.879 32 H 0.074 0.926 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.152 0.848 38 H 0.163 0.837 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 13.095 11.072 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 N -0.289 5.289 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.238 4.238 7 N -0.556 5.556 8 Si 0.783 3.217 9 H -0.222 1.222 10 H -0.216 1.216 11 H -0.184 1.184 12 C 0.022 3.978 13 H 0.121 0.879 14 C -0.168 4.168 15 C -0.020 4.020 16 N -0.294 5.294 17 C 0.056 3.944 18 C -0.221 4.221 19 C -0.120 4.120 20 C -0.172 4.172 21 C -0.105 4.105 22 C -0.184 4.184 23 C 0.278 3.722 24 O -0.425 6.425 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.057 0.943 31 H 0.139 0.861 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.169 0.831 38 H 0.180 0.820 39 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.918 12.539 10.844 16.832 hybrid contribution 0.694 -0.580 -1.268 1.557 sum -2.224 11.959 9.576 15.481 Atomic orbital electron populations 1.22082 0.96662 1.00444 1.01067 1.20977 0.92748 0.85046 1.00185 1.43973 1.72808 1.11911 1.00187 1.19122 1.35073 0.94165 0.90762 0.91835 1.25878 0.96792 0.98324 1.02845 1.70214 1.36811 1.17020 1.31570 0.85489 0.78141 0.77330 0.80756 1.22242 1.21566 1.18370 1.21584 0.89188 0.95555 0.91444 0.87859 1.23026 0.99168 0.92950 1.01629 1.22475 0.77952 0.98987 1.02542 1.46207 1.07029 1.13014 1.63132 1.18270 0.85496 0.92562 0.98033 1.21602 0.92988 1.01710 1.05762 1.21234 0.97267 0.95479 0.98051 1.21428 0.99380 0.93972 1.02408 1.21376 0.91106 1.01007 0.97058 1.21100 1.01295 0.90702 1.05296 1.23089 0.94471 0.81092 0.73516 1.90523 1.41660 1.60062 1.50245 0.94139 0.92523 0.92355 0.91794 0.96599 0.94260 0.86057 0.90762 0.87551 0.88235 0.87103 0.85132 0.83074 0.81957 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.26 10.23 71.98 0.74 -4.52 16 2 C 0.14 6.45 5.91 86.38 0.51 6.96 16 3 N -0.57 -27.88 2.48 -677.63 -1.68 -29.56 16 4 C -0.26 -14.21 8.45 84.03 0.71 -13.50 16 5 H 0.06 3.39 6.63 -2.91 -0.02 3.37 16 6 C -0.04 -2.34 4.92 84.86 0.42 -1.92 16 7 N -0.91 -56.41 11.34 21.65 0.25 -56.17 16 8 Si 0.96 45.86 29.61 68.60 2.03 47.90 16 9 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 10 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 11 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 12 C 0.13 5.40 3.46 45.06 0.16 5.56 16 13 H 0.10 3.76 7.93 -2.39 -0.02 3.75 16 14 C -0.13 -3.72 6.77 31.73 0.21 -3.51 16 15 C 0.10 2.52 6.51 86.83 0.56 3.08 16 16 N -0.57 -20.79 3.14 -627.69 -1.97 -22.76 16 17 C 0.15 5.34 6.60 38.15 0.25 5.59 16 18 C -0.20 -7.85 9.29 22.39 0.21 -7.64 16 19 C -0.10 -3.11 10.04 22.25 0.22 -2.89 16 20 C -0.15 -3.57 10.04 22.29 0.22 -3.35 16 21 C -0.09 -1.86 10.04 22.25 0.22 -1.63 16 22 C -0.16 -4.18 9.42 22.39 0.21 -3.97 16 23 C 0.49 22.63 6.98 87.90 0.61 23.25 16 24 O -0.55 -31.41 14.81 -3.06 -0.05 -31.45 16 25 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 28 H 0.06 3.56 5.34 -2.39 -0.01 3.55 16 29 H 0.02 0.74 8.06 -2.39 -0.02 0.72 16 30 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 31 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.07 2.48 6.36 -2.39 -0.02 2.47 16 33 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 2.00 7.23 -2.38 -0.02 1.99 16 35 H 0.11 5.34 5.26 -2.91 -0.02 5.33 16 36 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 37 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 38 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 39 H 0.15 2.88 6.74 -2.91 -0.02 2.86 16 Total: -1.00 -77.41 318.09 4.89 -72.52 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 1.04 Total: 18.02 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.26 Total: 1.49 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -3.40 Total: -108.48 kcal Atomic # 8 Polarization: -31.41 SS G_CDS: -0.05 Total: -31.45 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.90 kcal Total: -77.41 4.89 -72.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371635428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.890 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.518 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds