Wall clock time and date at job start Mon Mar 30 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47385 * 2 1 4 4 C 1.53004 * 109.47425 * 119.99769 * 2 1 3 5 5 N 1.46504 * 109.46973 * 295.00314 * 4 2 1 6 6 C 1.36929 * 119.99781 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00578 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00249 * 180.02562 * 6 5 4 9 9 N 1.31628 * 119.99763 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00509 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47104 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47624 * 119.99800 * 10 8 6 13 13 H 1.48507 * 109.47052 * 239.99784 * 10 8 6 14 14 C 1.53004 * 109.47621 * 239.99949 * 2 1 3 15 15 N 1.46503 * 109.46830 * 64.99830 * 14 2 1 16 16 C 1.34777 * 119.99909 * 180.02562 * 15 14 2 17 17 O 1.21285 * 120.00046 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99789 * 179.97438 * 16 15 14 19 19 F 1.39899 * 110.90830 * 57.13738 * 18 16 15 20 20 C 1.55457 * 110.92154 * 180.75426 * 18 16 15 21 21 C 1.54947 * 100.98961 * 152.22952 * 20 18 16 22 22 O 1.43650 * 105.13275 * 323.60678 * 21 20 18 23 23 C 1.43233 * 109.97542 * 24.42908 * 22 21 20 24 24 H 1.08999 * 109.46976 * 60.00211 * 1 2 3 25 25 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47443 * 300.00258 * 1 2 3 27 27 H 1.09001 * 109.46671 * 55.00009 * 4 2 1 28 28 H 1.08996 * 109.47457 * 175.00061 * 4 2 1 29 29 H 0.97001 * 119.99961 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99591 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.46921 * 305.00541 * 14 2 1 32 32 H 1.08998 * 109.47142 * 184.99732 * 14 2 1 33 33 H 0.97005 * 119.99926 * 0.02562 * 15 14 2 34 34 H 1.08999 * 111.05650 * 34.31564 * 20 18 16 35 35 H 1.09001 * 111.18400 * 270.19747 * 20 18 16 36 36 H 1.08996 * 110.31348 * 204.69266 * 21 20 18 37 37 H 1.09000 * 110.30898 * 82.52016 * 21 20 18 38 38 H 1.09002 * 109.83312 * 117.80151 * 23 22 21 39 39 H 1.08996 * 109.82720 * 238.68562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0010 -0.4206 3.6855 7 1 2.5622 -1.3380 3.7865 8 6 1.6334 0.2959 4.8161 9 7 0.9500 1.4141 4.6931 10 14 2.1096 -0.3259 6.5120 11 1 2.8696 -1.5946 6.3786 12 1 2.9544 0.6886 7.1920 13 1 0.8828 -0.5661 7.3136 14 6 2.0401 -0.7213 -1.2492 15 7 1.6525 0.0354 -2.4424 16 6 1.9957 -0.4136 -3.6660 17 8 2.6250 -1.4442 -3.7793 18 6 1.5965 0.3645 -4.8933 19 9 2.0852 1.6740 -4.8352 20 6 2.0821 -0.3500 -6.1858 21 6 1.0223 0.1345 -7.2070 22 8 -0.2094 0.1929 -6.4701 23 6 0.0632 0.3577 -5.0736 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7994 1.2056 29 1 1.1481 0.8591 2.3518 30 1 0.6934 1.9150 5.4831 31 1 1.6054 -1.7198 -1.2952 32 1 3.1264 -0.7994 -1.2055 33 1 1.1488 0.8595 -2.3517 34 1 2.0497 -1.4334 -6.0701 35 1 3.0808 -0.0172 -6.4683 36 1 0.9375 -0.5753 -8.0298 37 1 1.2846 1.1228 -7.5844 38 1 -0.3544 1.3019 -4.7241 39 1 -0.3714 -0.4692 -4.5120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495731760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:56 Heat of formation + Delta-G solvation = -125.314714 kcal Electronic energy + Delta-G solvation = -21329.866633 eV Core-core repulsion = 17801.075154 eV Total energy + Delta-G solvation = -3528.791480 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.38268 -40.31381 -38.95491 -36.96873 -34.55388 -32.71176 -32.17291 -30.32663 -29.68960 -26.70641 -25.54181 -23.87198 -22.97656 -22.16249 -20.71271 -19.93865 -18.42436 -17.50250 -17.04371 -16.65337 -15.92404 -15.79065 -15.43044 -15.17649 -14.87070 -14.52955 -14.36950 -14.03457 -13.65695 -13.51235 -13.14614 -12.71002 -12.62744 -12.41141 -12.22873 -12.12794 -12.02490 -11.36844 -11.11714 -10.97180 -10.77756 -10.64237 -10.50510 -10.20797 -10.08030 -9.97400 -9.71214 -9.29433 -8.91359 -6.95784 -5.80027 -3.08698 2.06471 2.63496 3.20932 3.41738 3.45432 3.47772 3.49773 3.81455 4.20837 4.28837 4.45978 4.56095 4.68751 4.92693 5.06600 5.11620 5.20624 5.21890 5.29337 5.32114 5.54386 5.55026 5.70195 5.85003 5.86900 6.00634 6.13462 6.25667 6.32994 6.34088 6.59240 6.70942 6.79908 7.12849 7.68162 7.75663 8.38977 9.50442 10.07040 10.41750 11.42989 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.048529 B = 0.002957 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.841456 B = 9466.384745 C = 9660.965335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.112 4.112 3 H 0.078 0.922 4 C 0.161 3.839 5 N -0.731 5.731 6 C -0.239 4.239 7 H 0.071 0.929 8 C -0.014 4.014 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.291 1.291 13 H -0.291 1.291 14 C 0.124 3.876 15 N -0.710 5.710 16 C 0.508 3.492 17 O -0.518 6.518 18 C 0.066 3.934 19 F -0.179 7.179 20 C -0.159 4.159 21 C 0.049 3.951 22 O -0.372 6.372 23 C 0.040 3.960 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.021 0.979 29 H 0.384 0.616 30 H 0.255 0.745 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.405 0.595 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.093 0.907 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.952 -1.152 -23.218 23.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 H 0.097 0.903 4 C 0.033 3.967 5 N -0.376 5.376 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.210 4.210 9 N -0.583 5.583 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.219 1.219 13 H -0.219 1.219 14 C 0.001 3.999 15 N -0.361 5.361 16 C 0.291 3.709 17 O -0.394 6.394 18 C 0.044 3.956 19 F -0.160 7.160 20 C -0.197 4.197 21 C -0.027 4.027 22 O -0.291 6.291 23 C -0.037 4.037 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.218 0.782 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.240 0.760 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.116 0.884 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.610 -1.994 -23.222 23.315 hybrid contribution 0.143 0.627 1.191 1.354 sum -0.467 -1.366 -22.031 22.078 Atomic orbital electron populations 1.21805 0.94527 1.02034 1.01623 1.21576 0.96835 1.00631 0.94039 0.90349 1.20567 0.96644 0.94200 0.85304 1.42341 1.66935 1.27700 1.00578 1.19276 1.28666 1.05469 0.83608 0.91086 1.24744 1.00986 0.97398 0.97903 1.69669 1.43584 1.16591 1.28421 0.86105 0.77607 0.77843 0.84570 1.20534 1.21853 1.21853 1.21556 1.00525 0.95316 0.82540 1.46093 1.56569 1.27726 1.05740 1.20169 0.80404 0.86091 0.84283 1.90754 1.38684 1.23893 1.86075 1.22731 0.96534 0.79620 0.96730 1.92955 1.89154 1.36513 1.97360 1.23766 1.01333 1.03328 0.91241 1.23519 0.82652 1.01641 0.94897 1.88460 1.29054 1.94883 1.16683 1.23729 0.91142 1.04210 0.84656 0.93950 0.92691 0.90953 0.95939 0.96089 0.78183 0.93546 0.90813 0.90899 0.76001 0.86988 0.87897 0.88410 0.91228 0.88887 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 8.94 37.15 0.33 -1.66 16 2 C -0.11 -1.64 2.46 -90.62 -0.22 -1.86 16 3 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 4 C 0.16 3.10 5.65 -4.04 -0.02 3.08 16 5 N -0.73 -18.01 5.33 -59.91 -0.32 -18.33 16 6 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 7 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 10 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.12 1.59 5.07 -4.04 -0.02 1.57 16 15 N -0.71 -7.87 5.28 -60.29 -0.32 -8.19 16 16 C 0.51 6.05 6.78 -10.99 -0.07 5.97 16 17 O -0.52 -7.74 15.71 5.55 0.09 -7.65 16 18 C 0.07 0.64 1.45 -89.74 -0.13 0.51 16 19 F -0.18 -1.88 16.97 2.25 0.04 -1.84 16 20 C -0.16 -1.31 6.09 -24.40 -0.15 -1.46 16 21 C 0.05 0.36 7.78 38.18 0.30 0.65 16 22 O -0.37 -3.60 11.36 -35.23 -0.40 -4.00 16 23 C 0.04 0.34 7.21 37.88 0.27 0.62 16 24 H 0.04 0.46 7.18 -51.93 -0.37 0.09 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.20 7.18 -51.93 -0.37 0.83 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.38 9.85 6.85 -40.82 -0.28 9.57 16 30 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.40 3.74 7.66 -40.82 -0.31 3.43 16 34 H 0.11 0.99 7.38 -51.93 -0.38 0.60 16 35 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 0.68 8.11 -51.93 -0.42 0.26 16 39 H 0.09 0.75 7.80 -51.93 -0.41 0.35 16 LS Contribution 327.09 15.07 4.93 4.93 Total: -1.00 -32.22 327.09 -6.14 -38.37 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -5.90 Total: 6.50 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: 0.04 Total: 0.14 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.09 Total: -53.71 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.31 Total: -11.65 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.22 -6.14 -38.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495731760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.950 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds