Wall clock time and date at job start Mon Mar 30 2020 01:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47385 * 2 1 4 4 C 1.53004 * 109.47425 * 119.99769 * 2 1 3 5 5 N 1.46504 * 109.46973 * 295.00314 * 4 2 1 6 6 C 1.36929 * 119.99781 * 179.97438 * 5 4 2 7 7 H 1.08005 * 120.00578 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00249 * 180.02562 * 6 5 4 9 9 N 1.31628 * 119.99763 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00509 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47104 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47624 * 119.99800 * 10 8 6 13 13 H 1.48507 * 109.47052 * 239.99784 * 10 8 6 14 14 C 1.53004 * 109.47621 * 239.99949 * 2 1 3 15 15 N 1.46503 * 109.46830 * 64.99830 * 14 2 1 16 16 C 1.34777 * 119.99909 * 180.02562 * 15 14 2 17 17 O 1.21285 * 120.00046 * 0.02562 * 16 15 14 18 18 C 1.50700 * 119.99789 * 179.97438 * 16 15 14 19 19 F 1.39899 * 110.90830 * 57.13738 * 18 16 15 20 20 C 1.55457 * 110.92154 * 180.75426 * 18 16 15 21 21 C 1.54947 * 100.98961 * 152.22952 * 20 18 16 22 22 O 1.43650 * 105.13275 * 323.60678 * 21 20 18 23 23 C 1.43233 * 109.97542 * 24.42908 * 22 21 20 24 24 H 1.08999 * 109.46976 * 60.00211 * 1 2 3 25 25 H 1.09001 * 109.47192 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47443 * 300.00258 * 1 2 3 27 27 H 1.09001 * 109.46671 * 55.00009 * 4 2 1 28 28 H 1.08996 * 109.47457 * 175.00061 * 4 2 1 29 29 H 0.97001 * 119.99961 * 0.02562 * 5 4 2 30 30 H 0.96999 * 119.99591 * 180.02562 * 9 8 6 31 31 H 1.08997 * 109.46921 * 305.00541 * 14 2 1 32 32 H 1.08998 * 109.47142 * 184.99732 * 14 2 1 33 33 H 0.97005 * 119.99926 * 0.02562 * 15 14 2 34 34 H 1.08999 * 111.05650 * 34.31564 * 20 18 16 35 35 H 1.09001 * 111.18400 * 270.19747 * 20 18 16 36 36 H 1.08996 * 110.31348 * 204.69266 * 21 20 18 37 37 H 1.09000 * 110.30898 * 82.52016 * 21 20 18 38 38 H 1.09002 * 109.83312 * 117.80151 * 23 22 21 39 39 H 1.08996 * 109.82720 * 238.68562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0354 2.4424 6 6 2.0010 -0.4206 3.6855 7 1 2.5622 -1.3380 3.7865 8 6 1.6334 0.2959 4.8161 9 7 0.9500 1.4141 4.6931 10 14 2.1096 -0.3259 6.5120 11 1 2.8696 -1.5946 6.3786 12 1 2.9544 0.6886 7.1920 13 1 0.8828 -0.5661 7.3136 14 6 2.0401 -0.7213 -1.2492 15 7 1.6525 0.0354 -2.4424 16 6 1.9957 -0.4136 -3.6660 17 8 2.6250 -1.4442 -3.7793 18 6 1.5965 0.3645 -4.8933 19 9 2.0852 1.6740 -4.8352 20 6 2.0821 -0.3500 -6.1858 21 6 1.0223 0.1345 -7.2070 22 8 -0.2094 0.1929 -6.4701 23 6 0.0632 0.3577 -5.0736 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.6054 -1.7198 1.2952 28 1 3.1263 -0.7994 1.2056 29 1 1.1481 0.8591 2.3518 30 1 0.6934 1.9150 5.4831 31 1 1.6054 -1.7198 -1.2952 32 1 3.1264 -0.7994 -1.2055 33 1 1.1488 0.8595 -2.3517 34 1 2.0497 -1.4334 -6.0701 35 1 3.0808 -0.0172 -6.4683 36 1 0.9375 -0.5753 -8.0298 37 1 1.2846 1.1228 -7.5844 38 1 -0.3544 1.3019 -4.7241 39 1 -0.3714 -0.4692 -4.5120 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495731760.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:21:56 Heat of formation + Delta-G solvation = -148.712697 kcal Electronic energy + Delta-G solvation = -21330.881246 eV Core-core repulsion = 17801.075154 eV Total energy + Delta-G solvation = -3529.806092 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.17287 -41.21783 -39.72056 -38.28380 -36.08445 -34.24162 -32.98370 -31.95910 -30.52713 -27.83586 -27.18174 -25.00887 -24.09327 -23.26841 -21.72521 -21.11907 -19.50772 -18.89320 -18.18310 -17.60520 -16.96306 -16.59075 -16.42751 -16.29881 -15.96495 -15.64594 -15.59654 -15.42181 -14.90133 -14.81879 -14.18004 -14.13871 -13.68142 -13.58209 -13.42766 -12.96811 -12.86367 -12.83905 -12.64000 -12.22715 -12.14881 -12.06319 -12.00569 -11.73181 -11.67735 -11.10089 -10.95955 -10.70441 -10.30189 -9.00009 -7.96280 -5.24480 1.13148 1.47836 1.47942 1.58192 1.72281 2.55192 2.56418 2.73616 3.10156 3.37844 3.41585 3.60660 3.67080 3.83986 3.93463 4.04406 4.11838 4.32417 4.46082 4.51225 4.57207 4.66709 4.68327 4.71293 4.75114 4.91621 4.93212 5.02056 5.10490 5.17678 5.35661 5.45881 5.49883 5.72102 6.20907 6.27067 6.84217 7.33592 8.08745 8.32469 9.27390 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.048529 B = 0.002957 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.841456 B = 9466.384745 C = 9660.965335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.096 4.096 3 H 0.077 0.923 4 C 0.157 3.843 5 N -0.742 5.742 6 C -0.245 4.245 7 H 0.074 0.926 8 C -0.075 4.075 9 N -0.968 5.968 10 Si 0.972 3.028 11 H -0.267 1.267 12 H -0.293 1.293 13 H -0.293 1.293 14 C 0.135 3.865 15 N -0.702 5.702 16 C 0.509 3.491 17 O -0.551 6.551 18 C 0.068 3.932 19 F -0.183 7.183 20 C -0.158 4.158 21 C 0.049 3.951 22 O -0.389 6.389 23 C 0.041 3.959 24 H 0.076 0.924 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.024 0.976 28 H 0.020 0.980 29 H 0.376 0.624 30 H 0.251 0.749 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.416 0.584 34 H 0.105 0.895 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 -1.397 -24.402 24.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.115 4.115 3 H 0.096 0.904 4 C 0.030 3.970 5 N -0.385 5.385 6 C -0.377 4.377 7 H 0.092 0.908 8 C -0.267 4.267 9 N -0.619 5.619 10 Si 0.801 3.199 11 H -0.192 1.192 12 H -0.220 1.220 13 H -0.220 1.220 14 C 0.011 3.989 15 N -0.353 5.353 16 C 0.293 3.707 17 O -0.429 6.429 18 C 0.046 3.954 19 F -0.164 7.164 20 C -0.196 4.196 21 C -0.027 4.027 22 O -0.309 6.309 23 C -0.036 4.036 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.209 0.791 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.253 0.747 34 H 0.123 0.877 35 H 0.129 0.871 36 H 0.135 0.865 37 H 0.097 0.903 38 H 0.125 0.875 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.655 -2.247 -24.436 24.548 hybrid contribution 0.188 0.675 1.492 1.648 sum -0.467 -1.572 -22.944 23.003 Atomic orbital electron populations 1.21745 0.93690 1.02186 1.01834 1.21353 0.97344 1.00068 0.92760 0.90441 1.20726 0.96575 0.94200 0.85523 1.42522 1.66794 1.27857 1.01374 1.19658 1.27721 1.05279 0.85028 0.90793 1.25540 1.01730 0.97913 1.01508 1.69811 1.45154 1.17875 1.29044 0.85091 0.77099 0.77611 0.80063 1.19190 1.22036 1.21970 1.21283 0.99995 0.95252 0.82324 1.45968 1.56369 1.27886 1.05101 1.20532 0.79609 0.85759 0.84846 1.90743 1.40136 1.25419 1.86586 1.22717 0.97544 0.79156 0.95987 1.92950 1.89331 1.36762 1.97332 1.23797 1.02191 1.02800 0.90842 1.23675 0.81430 1.02745 0.94803 1.88438 1.30248 1.95050 1.17146 1.23788 0.90080 1.05188 0.84527 0.90543 0.92574 0.93878 0.95806 0.96209 0.79086 0.93967 0.90685 0.91610 0.74704 0.87666 0.87121 0.86537 0.90260 0.87476 0.88438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.94 71.98 0.64 -3.01 16 2 C -0.10 -2.72 2.46 -10.79 -0.03 -2.75 16 3 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 4 C 0.16 5.98 5.65 86.38 0.49 6.47 16 5 N -0.74 -36.77 5.33 -343.44 -1.83 -38.60 16 6 C -0.24 -13.59 9.99 84.03 0.84 -12.75 16 7 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 8 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 9 N -0.97 -58.53 13.06 21.65 0.28 -58.25 16 10 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 11 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 14 C 0.14 3.30 5.07 86.38 0.44 3.73 16 15 N -0.70 -14.25 5.28 -463.05 -2.45 -16.70 16 16 C 0.51 11.36 6.78 87.66 0.59 11.95 16 17 O -0.55 -15.94 15.71 -3.04 -0.05 -15.99 16 18 C 0.07 1.19 1.45 -10.23 -0.01 1.17 16 19 F -0.18 -3.49 16.97 44.97 0.76 -2.73 16 20 C -0.16 -2.36 6.09 32.11 0.20 -2.17 16 21 C 0.05 0.61 7.78 72.65 0.57 1.18 16 22 O -0.39 -6.73 11.36 -148.98 -1.69 -8.42 16 23 C 0.04 0.62 7.21 72.45 0.52 1.15 16 24 H 0.08 1.49 7.18 -2.39 -0.02 1.48 16 25 H 0.06 1.47 8.14 -2.39 -0.02 1.46 16 26 H 0.04 1.41 7.18 -2.39 -0.02 1.40 16 27 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.38 19.59 6.85 -92.71 -0.63 18.95 16 30 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.42 6.68 7.66 -92.70 -0.71 5.97 16 34 H 0.10 1.74 7.38 -2.39 -0.02 1.72 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 1.29 8.11 -2.39 -0.02 1.27 16 39 H 0.10 1.37 7.80 -2.39 -0.02 1.35 16 Total: -1.00 -68.32 327.09 1.49 -66.83 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.28 Total: 24.71 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 4.71 Total: 1.19 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -3.99 Total: -113.54 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.74 Total: -24.41 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.76 Total: -2.73 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -68.32 1.49 -66.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495731760.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.880 kcal (2) G-P(sol) polarization free energy of solvation -68.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds