Wall clock time and date at job start Mon Mar 30 2020 02:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 109.48484 * 2 1 4 4 C 1.53102 * 109.47954 * 120.02051 * 2 1 3 5 5 C 1.53175 * 109.16202 * 177.58946 * 4 2 1 6 6 C 1.50698 * 109.54521 * 62.97297 * 5 4 2 7 7 H 1.08000 * 120.00406 * 240.39835 * 6 5 4 8 8 C 1.37881 * 119.99568 * 60.40037 * 6 5 4 9 9 N 1.31516 * 120.00184 * 3.27655 * 8 6 5 10 10 Si 1.86806 * 119.99815 * 183.28348 * 8 6 5 11 11 H 1.48503 * 109.46976 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.47058 * 119.99762 * 10 8 6 13 13 H 1.48502 * 109.46664 * 239.99850 * 10 8 6 14 14 C 1.53001 * 109.54144 * 183.15238 * 5 4 2 15 15 C 1.50705 * 109.47104 * 180.16796 * 14 5 4 16 16 C 1.38235 * 120.00032 * 268.50962 * 15 14 5 17 17 C 1.38234 * 119.99829 * 179.74489 * 16 15 14 18 18 C 1.38242 * 119.99836 * 0.52508 * 17 16 15 19 19 C 1.38238 * 119.99863 * 359.74642 * 18 17 16 20 20 C 1.38232 * 120.00164 * 359.97438 * 19 18 17 21 21 C 1.53183 * 109.03831 * 303.01856 * 5 4 2 22 22 C 1.53093 * 109.16179 * 56.98198 * 21 5 4 23 23 O 1.42903 * 109.41617 * 302.39087 * 22 21 5 24 24 H 1.09006 * 109.47154 * 299.98168 * 1 2 3 25 25 H 1.09000 * 109.47520 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47128 * 59.98073 * 1 2 3 27 27 H 1.08998 * 109.47430 * 74.87430 * 3 2 1 28 28 H 1.08998 * 109.47331 * 194.88468 * 3 2 1 29 29 H 1.09009 * 109.46835 * 314.87519 * 3 2 1 30 30 H 1.08994 * 109.52159 * 297.49423 * 4 2 1 31 31 H 1.09000 * 109.52098 * 57.62217 * 4 2 1 32 32 H 0.97003 * 120.00043 * 185.00239 * 9 8 6 33 33 H 1.09002 * 109.47158 * 300.16692 * 14 5 4 34 34 H 1.08996 * 109.47284 * 60.17183 * 14 5 4 35 35 H 1.07996 * 119.99785 * 359.97438 * 16 15 14 36 36 H 1.07999 * 120.00210 * 180.29006 * 17 16 15 37 37 H 1.08001 * 119.99593 * 179.77130 * 18 17 16 38 38 H 1.07997 * 119.99380 * 180.02562 * 19 18 17 39 39 H 1.07997 * 119.99814 * 180.02562 * 20 19 18 40 40 H 1.09000 * 109.52430 * 176.88621 * 21 5 4 41 41 H 1.09002 * 109.51854 * 297.01824 * 21 5 4 42 42 H 1.08995 * 109.48348 * 62.37420 * 22 21 5 43 43 H 1.08995 * 109.48208 * 182.39845 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0402 1.4423 0.0000 4 6 2.0405 -0.7221 1.2498 5 6 3.5710 -0.7708 1.2123 6 6 4.1212 0.6316 1.2539 7 1 4.7294 0.9974 0.4399 8 6 3.8480 1.4476 2.3312 9 7 3.1617 0.9816 3.3517 10 14 4.4524 3.2151 2.3410 11 1 5.1950 3.4913 1.0849 12 1 3.2910 4.1349 2.4423 13 1 5.3523 3.4239 3.5037 14 6 4.0876 -1.5592 2.4175 15 6 5.5936 -1.6026 2.3814 16 6 6.2400 -2.6486 1.7498 17 6 7.6213 -2.6856 1.7120 18 6 8.3563 -1.6822 2.3154 19 6 7.7099 -0.6391 2.9518 20 6 6.3285 -0.5991 2.9845 21 6 4.0175 -1.4603 -0.0806 22 6 3.4307 -0.7096 -1.2789 23 8 2.0065 -0.6744 -1.1663 24 1 -0.3634 0.5136 0.8902 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5141 -0.8898 27 1 1.9087 1.8743 0.9920 28 1 3.0977 1.4536 -0.2640 29 1 1.4778 2.0267 -0.7283 30 1 1.7148 -0.1840 2.1399 31 1 1.6433 -1.7370 1.2718 32 1 2.9070 1.5744 4.0761 33 1 3.7601 -1.0737 3.3368 34 1 3.6940 -2.5750 2.3830 35 1 5.6657 -3.4349 1.2826 36 1 8.1263 -3.5004 1.2146 37 1 9.4356 -1.7131 2.2891 38 1 8.2842 0.1450 3.4227 39 1 5.8236 0.2160 3.4814 40 1 5.1058 -1.4500 -0.1419 41 1 3.6620 -2.4907 -0.0854 42 1 3.8192 0.3086 -1.2958 43 1 3.7100 -1.2206 -2.2002 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000245486.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:30 Heat of formation + Delta-G solvation = -34.818653 kcal Electronic energy + Delta-G solvation = -23139.905396 eV Core-core repulsion = 20149.347688 eV Total energy + Delta-G solvation = -2990.557708 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.18491 -39.66692 -36.51083 -34.36904 -33.36073 -32.01430 -31.47294 -29.24202 -28.39039 -26.85836 -26.43870 -24.05179 -23.04657 -22.27507 -20.85167 -20.10676 -17.76954 -17.18773 -17.03488 -16.67029 -16.20338 -15.74874 -15.68793 -15.16009 -14.86914 -14.75317 -14.16480 -13.96971 -13.79539 -13.53111 -13.43217 -13.00462 -12.96799 -12.86664 -12.56386 -12.41865 -12.31390 -12.18430 -12.11657 -11.79419 -11.67011 -11.60514 -11.50584 -11.03395 -10.66980 -10.53884 -10.10521 -9.85393 -9.54488 -9.12794 -7.89277 -5.88983 0.74487 0.82268 1.35831 1.45540 1.49186 2.49507 3.14484 3.18910 3.34148 4.21415 4.23834 4.31080 4.33303 4.40446 4.43634 4.49393 4.55356 4.61382 4.72948 4.82796 4.88897 4.92688 4.97381 5.02236 5.06785 5.13963 5.20142 5.24868 5.30028 5.35484 5.38403 5.46661 5.50116 5.63284 5.72982 5.78777 5.81430 5.87676 5.92287 6.00842 6.16484 6.30432 6.45436 6.59345 6.72053 6.99881 7.64542 9.09470 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016751 B = 0.009217 C = 0.006989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.178717 B = 3037.089684 C = 4005.480474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.120 3.880 3 C -0.156 4.156 4 C -0.118 4.118 5 C 0.078 3.922 6 C -0.465 4.465 7 H 0.040 0.960 8 C 0.054 3.946 9 N -0.896 5.896 10 Si 0.893 3.107 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.290 1.290 14 C -0.071 4.071 15 C -0.044 4.044 16 C -0.139 4.139 17 C -0.127 4.127 18 C -0.141 4.141 19 C -0.141 4.141 20 C -0.112 4.112 21 C -0.132 4.132 22 C 0.066 3.934 23 O -0.398 6.398 24 H 0.067 0.933 25 H 0.058 0.942 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.023 0.977 32 H 0.255 0.745 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.120 0.880 36 H 0.141 0.859 37 H 0.140 0.860 38 H 0.121 0.879 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 -4.469 -3.699 6.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.082 3.918 3 C -0.213 4.213 4 C -0.156 4.156 5 C 0.077 3.923 6 C -0.503 4.503 7 H 0.059 0.941 8 C -0.144 4.144 9 N -0.536 5.536 10 Si 0.722 3.278 11 H -0.200 1.200 12 H -0.213 1.213 13 H -0.217 1.217 14 C -0.109 4.109 15 C -0.044 4.044 16 C -0.157 4.157 17 C -0.145 4.145 18 C -0.159 4.159 19 C -0.159 4.159 20 C -0.131 4.131 21 C -0.170 4.170 22 C -0.010 4.010 23 O -0.319 6.319 24 H 0.086 0.914 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.098 0.902 34 H 0.047 0.953 35 H 0.138 0.862 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.139 0.861 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.967 -4.492 -3.626 6.490 hybrid contribution 0.330 1.512 0.613 1.664 sum 3.297 -2.980 -3.013 5.369 Atomic orbital electron populations 1.21717 0.92819 1.02089 1.02012 1.21371 0.93812 0.91599 0.85054 1.22633 1.02912 0.95604 1.00185 1.22037 0.98324 0.97127 0.98152 1.18083 0.91184 0.93289 0.89704 1.20861 1.29362 0.97517 1.02577 0.94149 1.24890 0.95905 0.98413 0.95236 1.69844 1.40222 1.34294 1.09290 0.86535 0.78275 0.85441 0.77594 1.20031 1.21289 1.21700 1.20700 0.90309 0.96962 1.02944 1.19953 0.96344 0.93412 0.94728 1.21192 0.95132 0.98633 1.00750 1.21300 0.93590 0.99465 1.00169 1.21243 1.00412 0.94810 0.99396 1.21308 0.94256 0.99366 1.00963 1.21107 0.94028 0.98122 0.99799 1.22164 0.99922 0.98056 0.96822 1.22510 0.80899 0.99677 0.97927 1.87742 1.21722 1.77933 1.44477 0.91431 0.92260 0.91902 0.93278 0.89911 0.95229 0.90583 0.95849 0.93463 0.90167 0.95324 0.86197 0.84109 0.84238 0.86080 0.88285 0.92266 0.93567 0.93629 0.88855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.42 8.79 71.98 0.63 -3.78 16 2 C 0.12 4.83 1.11 -10.76 -0.01 4.81 16 3 C -0.16 -6.53 7.07 71.98 0.51 -6.02 16 4 C -0.12 -5.15 3.70 30.69 0.11 -5.03 16 5 C 0.08 3.36 0.28 -52.81 -0.01 3.35 16 6 C -0.47 -21.71 2.76 25.60 0.07 -21.64 16 7 H 0.04 2.00 6.45 -2.91 -0.02 1.98 16 8 C 0.05 2.60 2.11 84.66 0.18 2.78 16 9 N -0.90 -44.59 9.38 21.45 0.20 -44.39 16 10 Si 0.89 40.47 29.29 68.60 2.01 42.48 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 13 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 14 C -0.07 -3.12 4.24 29.85 0.13 -2.99 16 15 C -0.04 -1.80 4.19 -19.86 -0.08 -1.88 16 16 C -0.14 -4.81 8.10 22.27 0.18 -4.63 16 17 C -0.13 -3.79 10.05 22.27 0.22 -3.57 16 18 C -0.14 -4.22 10.05 22.27 0.22 -3.99 16 19 C -0.14 -4.95 10.05 22.27 0.22 -4.72 16 20 C -0.11 -4.68 8.63 22.27 0.19 -4.49 16 21 C -0.13 -5.15 4.24 30.69 0.13 -5.02 16 22 C 0.07 2.48 6.43 72.01 0.46 2.94 16 23 O -0.40 -15.96 10.24 -148.98 -1.53 -17.48 16 24 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.05 2.21 6.22 -2.39 -0.01 2.20 16 28 H 0.08 3.65 3.29 -2.39 -0.01 3.65 16 29 H 0.03 1.11 8.06 -2.38 -0.02 1.09 16 30 H 0.08 3.66 6.15 -2.39 -0.01 3.64 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.26 12.60 8.32 -92.71 -0.77 11.82 16 33 H 0.08 3.96 5.90 -2.39 -0.01 3.94 16 34 H 0.03 1.18 8.07 -2.39 -0.02 1.16 16 35 H 0.12 3.81 8.06 -2.91 -0.02 3.78 16 36 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 37 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 38 H 0.12 3.77 8.06 -2.91 -0.02 3.75 16 39 H 0.10 4.64 6.79 -2.91 -0.02 4.62 16 40 H 0.06 2.32 6.50 -2.39 -0.02 2.30 16 41 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.81 5.21 -2.39 -0.01 1.80 16 43 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 Total: -1.00 -51.14 314.07 4.83 -46.31 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.98 Total: 26.98 kcal Atomic # 6 Polarization: -57.05 SS G_CDS: 3.16 Total: -53.90 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.20 Total: -44.39 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -1.53 Total: -17.48 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.01 Total: 42.48 kcal Total: -51.14 4.83 -46.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000245486.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.494 kcal (2) G-P(sol) polarization free energy of solvation -51.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds