Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.48079 * 2 1 4 4 C 1.53096 * 109.48213 * 120.02526 * 2 1 3 5 5 C 1.53178 * 109.16061 * 62.37275 * 4 2 1 6 6 H 1.09002 * 109.54260 * 297.02407 * 5 4 2 7 7 C 1.52998 * 109.54350 * 176.84960 * 5 4 2 8 8 H 1.09003 * 109.46860 * 299.99927 * 7 5 4 9 9 C 1.50705 * 109.47290 * 59.99530 * 7 5 4 10 10 H 1.07999 * 120.00161 * 234.73009 * 9 7 5 11 11 C 1.37872 * 119.99735 * 54.73102 * 9 7 5 12 12 N 1.31521 * 120.00339 * 2.54866 * 11 9 7 13 13 Si 1.86792 * 120.00069 * 182.55319 * 11 9 7 14 14 H 1.48508 * 109.47394 * 89.99889 * 13 11 9 15 15 H 1.48506 * 109.47469 * 210.00022 * 13 11 9 16 16 H 1.48500 * 109.47339 * 329.99504 * 13 11 9 17 17 C 1.50701 * 109.47189 * 180.02562 * 7 5 4 18 18 C 1.38225 * 119.99981 * 329.87312 * 17 7 5 19 19 C 1.38240 * 120.00005 * 179.97438 * 18 17 7 20 20 C 1.38233 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99816 * 0.28159 * 20 19 18 22 22 C 1.38230 * 119.99756 * 149.85365 * 17 7 5 23 23 C 1.53177 * 109.04008 * 56.97752 * 5 4 2 24 24 C 1.53095 * 109.16499 * 303.02070 * 23 5 4 25 25 O 1.42901 * 109.41087 * 57.60551 * 24 23 5 26 26 H 1.09006 * 109.46879 * 299.97205 * 1 2 3 27 27 H 1.08997 * 109.47264 * 59.97157 * 1 2 3 28 28 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47003 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47325 * 300.02427 * 3 2 1 31 31 H 1.09000 * 109.47196 * 60.02907 * 3 2 1 32 32 H 1.08996 * 109.52112 * 302.46564 * 4 2 1 33 33 H 1.08992 * 109.52277 * 182.27578 * 4 2 1 34 34 H 0.97001 * 120.00627 * 179.97438 * 12 11 9 35 35 H 1.08004 * 120.00294 * 359.97438 * 18 17 7 36 36 H 1.08002 * 119.99710 * 179.97438 * 19 18 17 37 37 H 1.07993 * 120.00199 * 180.02562 * 20 19 18 38 38 H 1.08003 * 120.00242 * 179.72573 * 21 20 19 39 39 H 1.08001 * 120.00464 * 0.02562 * 22 17 7 40 40 H 1.09003 * 109.51654 * 62.92557 * 23 5 4 41 41 H 1.08992 * 109.52384 * 183.11050 * 23 5 4 42 42 H 1.08993 * 109.48108 * 297.62321 * 24 23 5 43 43 H 1.09002 * 109.49000 * 177.59226 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 1.5757 -2.1813 1.2123 6 1 0.4867 -2.2179 1.2425 7 6 2.1467 -2.9314 2.4173 8 1 3.2357 -2.8967 2.3842 9 6 1.6620 -2.2829 3.6885 10 1 2.3729 -1.9534 4.4317 11 6 0.3109 -2.1104 3.9025 12 7 -0.5569 -2.5566 3.0207 13 14 -0.2871 -1.2427 5.4448 14 1 -0.3950 0.2150 5.1825 15 1 -1.6187 -1.7766 5.8284 16 1 0.6770 -1.4768 6.5498 17 6 1.6889 -4.3666 2.3787 18 6 0.4719 -4.6887 1.8080 19 6 0.0522 -6.0054 1.7720 20 6 0.8498 -6.9999 2.3063 21 6 2.0645 -6.6772 2.8818 22 6 2.4863 -5.3610 2.9135 23 6 2.0763 -2.8323 -0.0808 24 6 1.5644 -2.0286 -1.2790 25 8 2.0065 -0.6743 -1.1663 26 1 -0.3633 0.5134 0.8903 27 1 -0.3633 0.5143 -0.8897 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1303 1.4422 -0.0005 30 1 1.6767 1.9564 -0.8897 31 1 1.6774 1.9561 0.8902 32 1 1.6422 -0.2356 2.1398 33 1 3.1298 -0.6874 1.2709 34 1 -1.5074 -2.4355 3.1714 35 1 -0.1512 -3.9118 1.3901 36 1 -0.8990 -6.2570 1.3265 37 1 0.5222 -8.0286 2.2779 38 1 2.6858 -7.4536 3.3032 39 1 3.4372 -5.1094 3.3595 40 1 3.1663 -2.8401 -0.0863 41 1 1.7035 -3.8546 -0.1418 42 1 0.4749 -2.0550 -1.2957 43 1 1.9527 -2.4623 -2.2005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000288901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = -36.132665 kcal Electronic energy + Delta-G solvation = -22788.742062 eV Core-core repulsion = 19798.127375 eV Total energy + Delta-G solvation = -2990.614688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.55968 -38.07497 -34.94895 -32.96419 -31.97093 -30.32100 -29.63637 -28.01802 -26.83778 -26.19031 -24.01149 -22.25652 -21.50142 -20.85066 -19.31370 -18.32200 -16.33431 -15.85618 -15.44567 -15.23567 -14.77543 -14.14672 -13.90478 -13.64519 -13.61958 -13.17472 -12.54119 -12.42653 -12.20351 -12.11217 -11.80814 -11.74367 -11.50088 -11.42244 -11.10144 -10.97377 -10.89916 -10.72814 -10.45782 -10.37560 -10.15403 -9.94382 -9.87272 -9.31350 -9.10005 -9.00501 -8.56494 -8.41027 -7.79347 -7.38785 -6.02143 -4.17228 2.50129 2.59513 3.22859 3.31164 3.34400 4.34114 4.34560 4.98706 5.18155 5.41291 5.45977 5.64652 5.67716 5.80978 5.84274 5.92315 5.97244 6.01516 6.04314 6.10790 6.23440 6.25625 6.30560 6.39190 6.47952 6.52364 6.65371 6.72874 6.75212 6.78475 6.83573 6.94240 7.02677 7.19902 7.27429 7.28858 7.40452 7.53200 7.68040 7.82386 7.91662 7.93069 8.16248 8.20593 8.31583 8.81587 9.47803 10.89942 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.009054 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.471510 B = 3091.730114 C = 4329.360894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.109 3.891 3 C -0.134 4.134 4 C -0.115 4.115 5 C -0.088 4.088 6 H 0.120 0.880 7 C 0.081 3.919 8 H 0.025 0.975 9 C -0.500 4.500 10 H 0.056 0.944 11 C 0.072 3.928 12 N -0.876 5.876 13 Si 0.886 3.114 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.276 1.276 17 C -0.022 4.022 18 C -0.070 4.070 19 C -0.146 4.146 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.137 4.137 23 C -0.155 4.155 24 C 0.063 3.937 25 O -0.386 6.386 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.047 0.953 34 H 0.261 0.739 35 H 0.145 0.855 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.052 0.948 41 H 0.066 0.934 42 H 0.047 0.953 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 0.615 -5.642 5.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.070 3.930 3 C -0.191 4.191 4 C -0.152 4.152 5 C -0.106 4.106 6 H 0.138 0.862 7 C 0.062 3.938 8 H 0.043 0.957 9 C -0.538 4.538 10 H 0.074 0.926 11 C -0.130 4.130 12 N -0.513 5.513 13 Si 0.714 3.286 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.201 1.201 17 C -0.022 4.022 18 C -0.088 4.088 19 C -0.164 4.164 20 C -0.173 4.173 21 C -0.160 4.160 22 C -0.155 4.155 23 C -0.192 4.192 24 C -0.014 4.014 25 O -0.306 6.306 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.162 0.838 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.289 0.716 -5.787 5.971 hybrid contribution -0.642 0.069 1.321 1.470 sum 0.647 0.785 -4.465 4.580 Atomic orbital electron populations 1.22349 0.96099 1.03144 1.01158 1.21555 0.92972 0.92055 0.86443 1.21726 1.01408 0.94431 1.01542 1.21993 0.99498 0.97463 0.96271 1.21425 1.04891 0.92397 0.91887 0.86234 1.17896 0.94044 0.87754 0.94105 0.95652 1.21017 0.91892 1.37535 1.03334 0.92567 1.24857 0.96762 0.95120 0.96268 1.69705 1.01812 1.45110 1.34716 0.86677 0.78242 0.79833 0.83826 1.20630 1.21273 1.20070 1.20373 0.93579 0.96177 0.92108 1.21500 0.95397 0.94760 0.97154 1.21084 0.98993 0.94191 1.02160 1.20752 0.95987 0.97964 1.02623 1.20788 0.96909 0.96106 1.02197 1.20925 1.00042 0.92758 1.01824 1.22388 1.00514 0.99685 0.96661 1.22506 0.98357 0.82376 0.98141 1.87821 1.74141 1.24798 1.43821 0.91858 0.93519 0.91136 0.92377 0.92835 0.91470 0.90377 0.93429 0.92862 0.83758 0.88193 0.88392 0.88228 0.87912 0.92909 0.91555 0.93481 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 7.93 37.16 0.29 -2.61 16 2 C 0.11 1.91 1.11 -90.57 -0.10 1.81 16 3 C -0.13 -2.02 8.85 37.16 0.33 -1.69 16 4 C -0.11 -2.27 3.89 -26.59 -0.10 -2.37 16 5 C -0.09 -1.81 0.77 -90.44 -0.07 -1.88 16 6 H 0.12 2.68 3.01 -51.93 -0.16 2.52 16 7 C 0.08 1.84 1.91 -92.92 -0.18 1.66 16 8 H 0.03 0.58 8.08 -51.93 -0.42 0.16 16 9 C -0.50 -12.47 7.50 -34.44 -0.26 -12.73 16 10 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 11 C 0.07 1.78 5.14 -17.82 -0.09 1.68 16 12 N -0.88 -21.43 7.93 55.43 0.44 -20.99 16 13 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 C -0.02 -0.49 4.01 -104.63 -0.42 -0.91 16 18 C -0.07 -1.53 6.18 -39.59 -0.24 -1.77 16 19 C -0.15 -2.93 10.05 -39.58 -0.40 -3.32 16 20 C -0.16 -2.94 10.05 -39.58 -0.40 -3.34 16 21 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 22 C -0.14 -2.91 9.70 -39.58 -0.38 -3.29 16 23 C -0.15 -2.89 5.05 -26.59 -0.13 -3.03 16 24 C 0.06 1.07 6.52 37.21 0.24 1.31 16 25 O -0.39 -7.04 10.24 -35.23 -0.36 -7.40 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 1.29 4.98 -51.93 -0.26 1.03 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.67 7.35 -51.93 -0.38 1.29 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.26 6.29 8.31 -40.82 -0.34 5.95 16 35 H 0.15 3.30 4.96 -52.48 -0.26 3.04 16 36 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 37 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.10 1.65 8.06 -52.48 -0.42 1.22 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 40 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.25 6.31 -51.93 -0.33 0.92 16 42 H 0.05 0.79 6.34 -51.93 -0.33 0.46 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -25.16 322.25 -9.15 -34.31 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.75 Total: 7.80 kcal Atomic # 6 Polarization: -31.31 SS G_CDS: -2.31 Total: -33.62 kcal Atomic # 7 Polarization: -21.43 SS G_CDS: 0.44 Total: -20.99 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.36 Total: -7.40 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -25.16 -9.15 -34.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000288901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.821 kcal (2) G-P(sol) polarization free energy of solvation -25.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds