Wall clock time and date at job start Mon Mar 30 2020 02:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.48079 * 2 1 4 4 C 1.53096 * 109.48213 * 120.02526 * 2 1 3 5 5 C 1.53178 * 109.16061 * 62.37275 * 4 2 1 6 6 H 1.09002 * 109.54260 * 297.02407 * 5 4 2 7 7 C 1.52998 * 109.54350 * 176.84960 * 5 4 2 8 8 H 1.09003 * 109.46860 * 299.99927 * 7 5 4 9 9 C 1.50705 * 109.47290 * 59.99530 * 7 5 4 10 10 H 1.07999 * 120.00161 * 234.73009 * 9 7 5 11 11 C 1.37872 * 119.99735 * 54.73102 * 9 7 5 12 12 N 1.31521 * 120.00339 * 2.54866 * 11 9 7 13 13 Si 1.86792 * 120.00069 * 182.55319 * 11 9 7 14 14 H 1.48508 * 109.47394 * 89.99889 * 13 11 9 15 15 H 1.48506 * 109.47469 * 210.00022 * 13 11 9 16 16 H 1.48500 * 109.47339 * 329.99504 * 13 11 9 17 17 C 1.50701 * 109.47189 * 180.02562 * 7 5 4 18 18 C 1.38225 * 119.99981 * 329.87312 * 17 7 5 19 19 C 1.38240 * 120.00005 * 179.97438 * 18 17 7 20 20 C 1.38233 * 120.00030 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99816 * 0.28159 * 20 19 18 22 22 C 1.38230 * 119.99756 * 149.85365 * 17 7 5 23 23 C 1.53177 * 109.04008 * 56.97752 * 5 4 2 24 24 C 1.53095 * 109.16499 * 303.02070 * 23 5 4 25 25 O 1.42901 * 109.41087 * 57.60551 * 24 23 5 26 26 H 1.09006 * 109.46879 * 299.97205 * 1 2 3 27 27 H 1.08997 * 109.47264 * 59.97157 * 1 2 3 28 28 H 1.09002 * 109.47306 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47003 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47325 * 300.02427 * 3 2 1 31 31 H 1.09000 * 109.47196 * 60.02907 * 3 2 1 32 32 H 1.08996 * 109.52112 * 302.46564 * 4 2 1 33 33 H 1.08992 * 109.52277 * 182.27578 * 4 2 1 34 34 H 0.97001 * 120.00627 * 179.97438 * 12 11 9 35 35 H 1.08004 * 120.00294 * 359.97438 * 18 17 7 36 36 H 1.08002 * 119.99710 * 179.97438 * 19 18 17 37 37 H 1.07993 * 120.00199 * 180.02562 * 20 19 18 38 38 H 1.08003 * 120.00242 * 179.72573 * 21 20 19 39 39 H 1.08001 * 120.00464 * 0.02562 * 22 17 7 40 40 H 1.09003 * 109.51654 * 62.92557 * 23 5 4 41 41 H 1.08992 * 109.52384 * 183.11050 * 23 5 4 42 42 H 1.08993 * 109.48108 * 297.62321 * 24 23 5 43 43 H 1.09002 * 109.49000 * 177.59226 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 1.5757 -2.1813 1.2123 6 1 0.4867 -2.2179 1.2425 7 6 2.1467 -2.9314 2.4173 8 1 3.2357 -2.8967 2.3842 9 6 1.6620 -2.2829 3.6885 10 1 2.3729 -1.9534 4.4317 11 6 0.3109 -2.1104 3.9025 12 7 -0.5569 -2.5566 3.0207 13 14 -0.2871 -1.2427 5.4448 14 1 -0.3950 0.2150 5.1825 15 1 -1.6187 -1.7766 5.8284 16 1 0.6770 -1.4768 6.5498 17 6 1.6889 -4.3666 2.3787 18 6 0.4719 -4.6887 1.8080 19 6 0.0522 -6.0054 1.7720 20 6 0.8498 -6.9999 2.3063 21 6 2.0645 -6.6772 2.8818 22 6 2.4863 -5.3610 2.9135 23 6 2.0763 -2.8323 -0.0808 24 6 1.5644 -2.0286 -1.2790 25 8 2.0065 -0.6743 -1.1663 26 1 -0.3633 0.5134 0.8903 27 1 -0.3633 0.5143 -0.8897 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1303 1.4422 -0.0005 30 1 1.6767 1.9564 -0.8897 31 1 1.6774 1.9561 0.8902 32 1 1.6422 -0.2356 2.1398 33 1 3.1298 -0.6874 1.2709 34 1 -1.5074 -2.4355 3.1714 35 1 -0.1512 -3.9118 1.3901 36 1 -0.8990 -6.2570 1.3265 37 1 0.5222 -8.0286 2.2779 38 1 2.6858 -7.4536 3.3032 39 1 3.4372 -5.1094 3.3595 40 1 3.1663 -2.8401 -0.0863 41 1 1.7035 -3.8546 -0.1418 42 1 0.4749 -2.0550 -1.2957 43 1 1.9527 -2.4623 -2.2005 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000288901.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:44 Heat of formation + Delta-G solvation = -46.022477 kcal Electronic energy + Delta-G solvation = -22789.170916 eV Core-core repulsion = 19798.127375 eV Total energy + Delta-G solvation = -2991.043542 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07977 -39.63181 -36.60575 -34.35096 -33.75298 -31.93902 -31.22294 -29.59730 -28.19271 -27.80267 -25.68637 -23.86123 -23.05813 -22.39942 -20.92445 -19.85255 -18.15327 -17.45203 -16.87855 -16.82193 -16.46526 -15.70807 -15.41272 -15.22717 -15.12608 -14.81736 -14.10206 -13.88637 -13.75291 -13.67215 -13.36926 -13.18161 -13.03942 -12.87579 -12.75166 -12.54796 -12.49631 -12.40002 -12.10062 -11.85728 -11.78456 -11.59784 -11.54776 -10.90407 -10.77106 -10.67764 -10.31291 -10.01129 -9.39646 -9.04751 -7.89796 -6.10832 0.88625 1.01101 1.39712 1.44477 1.49751 2.46024 2.97767 3.23813 3.38479 4.00491 4.09406 4.18970 4.22532 4.37047 4.39524 4.40726 4.53235 4.55911 4.70982 4.75503 4.78454 4.86090 4.88791 4.95649 4.98516 5.10129 5.11588 5.17371 5.21203 5.25663 5.28843 5.39719 5.48254 5.59381 5.61546 5.64279 5.75944 5.84225 5.95549 6.13649 6.19213 6.42745 6.48633 6.50826 6.59191 6.90249 7.54169 8.97741 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014330 B = 0.009054 C = 0.006466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1953.471510 B = 3091.730114 C = 4329.360894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.107 3.893 3 C -0.131 4.131 4 C -0.110 4.110 5 C -0.080 4.080 6 H 0.107 0.893 7 C 0.079 3.921 8 H 0.009 0.991 9 C -0.519 4.519 10 H 0.038 0.962 11 C 0.046 3.954 12 N -0.876 5.876 13 Si 0.928 3.072 14 H -0.275 1.275 15 H -0.288 1.288 16 H -0.283 1.283 17 C -0.043 4.043 18 C -0.082 4.082 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.140 4.140 22 C -0.158 4.158 23 C -0.147 4.147 24 C 0.064 3.936 25 O -0.391 6.391 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.038 0.962 34 H 0.259 0.741 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.104 0.896 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.812 -0.063 -6.544 6.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.069 3.931 3 C -0.188 4.188 4 C -0.148 4.148 5 C -0.099 4.099 6 H 0.124 0.876 7 C 0.060 3.940 8 H 0.027 0.973 9 C -0.557 4.557 10 H 0.056 0.944 11 C -0.155 4.155 12 N -0.513 5.513 13 Si 0.755 3.245 14 H -0.201 1.201 15 H -0.213 1.213 16 H -0.209 1.209 17 C -0.043 4.043 18 C -0.101 4.101 19 C -0.171 4.171 20 C -0.169 4.169 21 C -0.158 4.158 22 C -0.176 4.176 23 C -0.185 4.185 24 C -0.013 4.013 25 O -0.311 6.311 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.148 0.852 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.081 0.919 42 H 0.069 0.931 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.725 0.038 -6.696 6.735 hybrid contribution -0.438 0.197 1.626 1.696 sum 0.287 0.235 -5.070 5.083 Atomic orbital electron populations 1.22274 0.95630 1.02334 1.01868 1.21603 0.93340 0.93090 0.85107 1.21723 1.01560 0.92772 1.02770 1.21916 0.98777 0.97256 0.96861 1.21255 1.03791 0.92767 0.92044 0.87582 1.17876 0.93025 0.88783 0.94278 0.97283 1.21089 0.91994 1.38621 1.03991 0.94377 1.25224 0.96785 0.95597 0.97926 1.69824 1.01576 1.44955 1.34972 0.86039 0.77367 0.79425 0.81630 1.20066 1.21344 1.20887 1.20385 0.94417 0.96042 0.93474 1.21399 0.95191 0.95538 0.97936 1.21378 1.00056 0.93638 1.01997 1.21151 0.95316 0.99418 1.01036 1.21143 0.97433 0.95857 1.01378 1.21129 1.00308 0.93783 1.02350 1.22283 0.99969 0.99711 0.96561 1.22588 0.98683 0.81744 0.98241 1.87824 1.74372 1.25216 1.43672 0.92413 0.91439 0.92703 0.92214 0.91091 0.90756 0.92533 0.94322 0.93060 0.85178 0.86096 0.84904 0.85175 0.87831 0.93554 0.91855 0.93110 0.87892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 7.93 71.98 0.57 -4.88 16 2 C 0.11 3.70 1.11 -10.76 -0.01 3.69 16 3 C -0.13 -3.76 8.85 71.98 0.64 -3.12 16 4 C -0.11 -4.46 3.89 30.69 0.12 -4.34 16 5 C -0.08 -3.39 0.77 -10.68 -0.01 -3.40 16 6 H 0.11 4.85 3.01 -2.39 -0.01 4.85 16 7 C 0.08 3.74 1.91 -12.28 -0.02 3.71 16 8 H 0.01 0.43 8.08 -2.39 -0.02 0.41 16 9 C -0.52 -26.80 7.50 25.60 0.19 -26.61 16 10 H 0.04 2.04 7.81 -2.91 -0.02 2.01 16 11 C 0.05 2.31 5.14 84.65 0.44 2.75 16 12 N -0.88 -43.36 7.93 21.45 0.17 -43.19 16 13 Si 0.93 41.54 29.54 68.60 2.03 43.56 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 15 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 C -0.04 -1.94 4.01 -19.87 -0.08 -2.02 16 18 C -0.08 -3.59 6.18 22.27 0.14 -3.46 16 19 C -0.15 -5.85 10.05 22.27 0.22 -5.62 16 20 C -0.15 -5.29 10.05 22.27 0.22 -5.06 16 21 C -0.14 -5.10 10.05 22.27 0.22 -4.87 16 22 C -0.16 -6.65 9.70 22.27 0.22 -6.43 16 23 C -0.15 -5.53 5.05 30.69 0.16 -5.37 16 24 C 0.06 2.08 6.52 72.01 0.47 2.55 16 25 O -0.39 -13.68 10.24 -148.98 -1.52 -15.21 16 26 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 27 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.05 1.99 4.98 -2.39 -0.01 1.98 16 29 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.06 2.50 7.35 -2.39 -0.02 2.48 16 33 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.26 12.56 8.31 -92.71 -0.77 11.79 16 35 H 0.13 6.02 4.96 -2.91 -0.01 6.01 16 36 H 0.12 4.04 8.06 -2.91 -0.02 4.01 16 37 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.13 3.88 8.06 -2.91 -0.02 3.85 16 39 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.06 2.40 6.31 -2.39 -0.02 2.38 16 42 H 0.05 1.64 6.34 -2.39 -0.02 1.62 16 43 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 Total: -1.00 -53.50 322.25 5.13 -48.37 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.98 Total: 28.96 kcal Atomic # 6 Polarization: -65.97 SS G_CDS: 3.48 Total: -62.49 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.17 Total: -43.19 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: -1.52 Total: -15.21 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.56 kcal Total: -53.50 5.13 -48.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000288901.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.344 kcal (2) G-P(sol) polarization free energy of solvation -53.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds