Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 C 1.53003 * 109.47422 * 120.00590 * 2 1 3 5 5 H 1.09003 * 109.47665 * 60.02122 * 4 2 1 6 6 C 1.53089 * 109.49222 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16371 * 177.59701 * 6 4 2 8 8 C 1.50696 * 109.61644 * 183.11083 * 7 6 4 9 9 H 1.08000 * 120.00131 * 0.25157 * 8 7 6 10 10 C 1.37883 * 119.99823 * 180.25276 * 8 7 6 11 11 N 1.31504 * 120.00187 * 4.07479 * 10 8 7 12 12 Si 1.86809 * 119.99569 * 184.07458 * 10 8 7 13 13 H 1.48496 * 109.47107 * 60.00294 * 12 10 8 14 14 H 1.48506 * 109.46690 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47158 * 299.99909 * 12 10 8 16 16 C 1.50693 * 109.54569 * 62.88302 * 7 6 4 17 17 C 1.38240 * 120.00445 * 231.81615 * 16 7 6 18 18 C 1.38238 * 119.99971 * 179.97438 * 17 16 7 19 19 C 1.38228 * 120.00105 * 0.09063 * 18 17 16 20 20 C 1.38236 * 120.00150 * 0.02562 * 19 18 17 21 21 C 1.38235 * 119.99923 * 359.97438 * 20 19 18 22 22 C 1.53182 * 109.03403 * 303.01896 * 7 6 4 23 23 C 1.53093 * 109.16401 * 56.98066 * 22 7 6 24 24 O 1.42900 * 109.47644 * 299.99795 * 4 2 1 25 25 H 1.09001 * 109.46801 * 299.99202 * 1 2 3 26 26 H 1.08997 * 109.46953 * 59.99735 * 1 2 3 27 27 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46925 * 240.00030 * 2 1 3 29 29 H 1.08998 * 109.47216 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47333 * 300.00597 * 3 2 1 31 31 H 1.09001 * 109.46527 * 60.00630 * 3 2 1 32 32 H 1.08999 * 109.52162 * 57.68858 * 6 4 2 33 33 H 1.08997 * 109.52066 * 297.50536 * 6 4 2 34 34 H 0.97003 * 120.00215 * 180.02562 * 11 10 8 35 35 H 1.08003 * 119.99517 * 0.09088 * 17 16 7 36 36 H 1.07996 * 119.99258 * 180.37254 * 18 17 16 37 37 H 1.07999 * 120.00002 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.99974 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.00034 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.52211 * 176.89097 * 22 7 6 41 41 H 1.09001 * 109.52380 * 297.01295 * 22 7 6 42 42 H 1.09000 * 109.47720 * 62.37216 * 23 22 7 43 43 H 1.09002 * 109.47831 * 182.40853 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6771 -1.7492 1.2490 6 6 3.5710 -0.7211 1.2499 7 6 4.0733 -1.3915 2.5322 8 6 5.5782 -1.3288 2.5798 9 1 6.1246 -0.8542 1.7781 10 6 6.2577 -1.8773 3.6469 11 7 5.5992 -2.5252 4.5828 12 14 8.1137 -1.7001 3.7629 13 1 8.4713 -0.2597 3.8121 14 1 8.5990 -2.3725 4.9950 15 1 8.7461 -2.3269 2.5745 16 6 3.6277 -2.8309 2.5564 17 6 2.9671 -3.3315 3.6628 18 6 2.5579 -4.6517 3.6847 19 6 2.8109 -5.4718 2.6011 20 6 3.4736 -4.9719 1.4958 21 6 3.8828 -3.6517 1.4738 22 6 3.4912 -0.6545 3.7424 23 6 1.9634 -0.6574 3.6453 24 8 1.5639 -0.0479 2.4161 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.9350 0.3055 1.2089 33 1 3.9357 -1.2727 0.3835 34 1 6.0771 -2.9108 5.3337 35 1 2.7691 -2.6905 4.5092 36 1 2.0365 -5.0411 4.5466 37 1 2.4915 -6.5034 2.6184 38 1 3.6716 -5.6128 0.6493 39 1 4.4009 -3.2612 0.6104 40 1 3.7991 -1.1585 4.6585 41 1 3.8546 0.3731 3.7524 42 1 1.5992 -1.6842 3.6768 43 1 1.5450 -0.0973 4.4816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000548962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -33.615123 kcal Electronic energy + Delta-G solvation = -22912.781725 eV Core-core repulsion = 19922.276206 eV Total energy + Delta-G solvation = -2990.505519 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.77190 -37.54394 -34.96211 -34.14731 -31.55518 -30.39119 -28.93064 -28.64599 -26.82943 -26.08363 -23.24726 -22.75952 -21.35065 -21.11113 -19.50733 -18.37204 -16.57910 -16.08933 -15.30520 -14.98740 -14.55140 -14.39913 -13.97912 -13.76448 -13.45678 -13.15891 -12.88875 -12.73435 -12.38787 -12.34515 -11.80402 -11.58342 -11.47915 -11.04927 -11.02864 -10.94182 -10.86406 -10.59154 -10.51398 -10.39905 -10.17458 -10.04035 -9.97654 -9.55539 -9.21430 -8.93304 -8.60981 -8.31971 -7.80494 -7.38875 -6.00519 -4.13904 2.49297 2.56229 3.27799 3.32960 3.35549 4.37182 4.51289 4.93277 5.21578 5.24453 5.32152 5.43221 5.80209 5.83838 5.92745 5.94563 5.96481 5.99324 6.06506 6.09995 6.19084 6.21825 6.25058 6.30449 6.36407 6.39858 6.49946 6.57260 6.61359 6.68872 6.74499 6.76001 7.00542 7.04418 7.10656 7.24659 7.36574 7.47739 7.57494 7.74179 7.83470 8.01740 8.12508 8.15671 8.31060 8.84678 9.50719 10.97101 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.008447 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.343862 B = 3313.839412 C = 4180.273885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.142 4.142 4 C 0.097 3.903 5 H 0.049 0.951 6 C -0.129 4.129 7 C 0.104 3.896 8 C -0.509 4.509 9 H 0.058 0.942 10 C 0.072 3.928 11 N -0.873 5.873 12 Si 0.888 3.112 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.278 1.278 16 C 0.008 3.992 17 C -0.087 4.087 18 C -0.137 4.137 19 C -0.155 4.155 20 C -0.137 4.137 21 C -0.123 4.123 22 C -0.140 4.140 23 C 0.046 3.954 24 O -0.385 6.385 25 H 0.061 0.939 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.261 0.739 35 H 0.119 0.881 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.052 0.948 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 1.136 -4.741 8.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.200 4.200 4 C 0.039 3.961 5 H 0.067 0.933 6 C -0.167 4.167 7 C 0.104 3.896 8 C -0.547 4.547 9 H 0.076 0.924 10 C -0.132 4.132 11 N -0.509 5.509 12 Si 0.716 3.284 13 H -0.203 1.203 14 H -0.214 1.214 15 H -0.204 1.204 16 C 0.007 3.993 17 C -0.105 4.105 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.142 4.142 22 C -0.178 4.178 23 C -0.030 4.030 24 O -0.305 6.305 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.071 0.929 35 H 0.137 0.863 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.602 1.200 -4.563 8.947 hybrid contribution 1.497 -0.464 0.305 1.597 sum -6.105 0.737 -4.258 7.480 Atomic orbital electron populations 1.21756 0.95451 1.01253 1.01414 1.21148 0.95769 0.96985 0.96724 1.21793 1.01319 0.95712 1.01140 1.22072 0.94423 0.94541 0.85037 0.93267 1.22294 0.93656 1.01220 0.99505 1.17225 0.95036 0.87102 0.90235 1.20900 0.89558 1.37942 1.06314 0.92374 1.24920 0.97996 0.94422 0.95843 1.69893 1.35285 1.34422 1.11298 0.86716 0.86018 0.78238 0.77398 1.20304 1.21354 1.20381 1.20139 0.90040 0.97602 0.91513 1.21050 0.97113 0.94463 0.97911 1.20939 1.02073 0.94860 0.97626 1.20710 1.03026 0.98497 0.95114 1.20848 1.00936 0.95790 0.97921 1.20840 1.00695 0.93383 0.99244 1.22246 0.91856 1.00475 1.03196 1.23038 0.97128 0.97379 0.85482 1.87733 1.74857 1.54213 1.13693 0.91962 0.93526 0.93272 0.90860 0.92296 0.93826 0.91981 0.91658 0.92451 0.92885 0.86316 0.88136 0.88270 0.88122 0.87483 0.88525 0.93182 0.92994 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.05 37.16 0.34 -1.57 16 2 C -0.09 -1.32 2.81 -90.62 -0.25 -1.57 16 3 C -0.14 -2.04 8.70 37.16 0.32 -1.72 16 4 C 0.10 1.74 2.15 -26.68 -0.06 1.69 16 5 H 0.05 0.95 7.38 -51.93 -0.38 0.56 16 6 C -0.13 -2.57 3.64 -26.60 -0.10 -2.66 16 7 C 0.10 2.35 0.35 -156.63 -0.06 2.29 16 8 C -0.51 -12.94 7.84 -34.44 -0.27 -13.21 16 9 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 10 C 0.07 1.85 5.15 -17.82 -0.09 1.76 16 11 N -0.87 -22.89 9.57 55.43 0.53 -22.36 16 12 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.01 0.17 2.46 -104.62 -0.26 -0.09 16 17 C -0.09 -1.89 6.10 -39.58 -0.24 -2.13 16 18 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 19 C -0.16 -2.94 10.05 -39.59 -0.40 -3.34 16 20 C -0.14 -2.66 10.05 -39.58 -0.40 -3.06 16 21 C -0.12 -2.64 8.96 -39.58 -0.35 -3.00 16 22 C -0.14 -3.06 4.13 -26.59 -0.11 -3.17 16 23 C 0.05 0.87 6.18 37.21 0.23 1.11 16 24 O -0.39 -7.30 9.06 -35.23 -0.32 -7.62 16 25 H 0.06 0.89 7.68 -51.93 -0.40 0.49 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 29 H 0.06 0.88 6.38 -51.93 -0.33 0.55 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.95 7.68 -51.93 -0.40 0.55 16 32 H 0.06 1.32 6.32 -51.93 -0.33 0.99 16 33 H 0.06 1.12 6.89 -51.93 -0.36 0.76 16 34 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 35 H 0.12 2.58 4.93 -52.48 -0.26 2.32 16 36 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 37 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.10 1.69 8.06 -52.48 -0.42 1.27 16 39 H 0.11 2.23 7.09 -52.49 -0.37 1.85 16 40 H 0.10 2.30 5.17 -51.93 -0.27 2.03 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.00 5.14 -51.93 -0.27 0.73 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 320.88 15.07 4.84 4.84 Total: -1.00 -26.30 320.88 -8.78 -35.07 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.71 Total: 6.24 kcal Atomic # 6 Polarization: -29.70 SS G_CDS: -2.09 Total: -31.79 kcal Atomic # 7 Polarization: -22.89 SS G_CDS: 0.53 Total: -22.36 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: -0.32 Total: -7.62 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -26.30 -8.78 -35.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000548962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.458 kcal (2) G-P(sol) polarization free energy of solvation -26.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds