Wall clock time and date at job start Mon Mar 30 2020 02:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47330 * 2 1 4 4 C 1.53003 * 109.47422 * 120.00590 * 2 1 3 5 5 H 1.09003 * 109.47665 * 60.02122 * 4 2 1 6 6 C 1.53089 * 109.49222 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16371 * 177.59701 * 6 4 2 8 8 C 1.50696 * 109.61644 * 183.11083 * 7 6 4 9 9 H 1.08000 * 120.00131 * 0.25157 * 8 7 6 10 10 C 1.37883 * 119.99823 * 180.25276 * 8 7 6 11 11 N 1.31504 * 120.00187 * 4.07479 * 10 8 7 12 12 Si 1.86809 * 119.99569 * 184.07458 * 10 8 7 13 13 H 1.48496 * 109.47107 * 60.00294 * 12 10 8 14 14 H 1.48506 * 109.46690 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47158 * 299.99909 * 12 10 8 16 16 C 1.50693 * 109.54569 * 62.88302 * 7 6 4 17 17 C 1.38240 * 120.00445 * 231.81615 * 16 7 6 18 18 C 1.38238 * 119.99971 * 179.97438 * 17 16 7 19 19 C 1.38228 * 120.00105 * 0.09063 * 18 17 16 20 20 C 1.38236 * 120.00150 * 0.02562 * 19 18 17 21 21 C 1.38235 * 119.99923 * 359.97438 * 20 19 18 22 22 C 1.53182 * 109.03403 * 303.01896 * 7 6 4 23 23 C 1.53093 * 109.16401 * 56.98066 * 22 7 6 24 24 O 1.42900 * 109.47644 * 299.99795 * 4 2 1 25 25 H 1.09001 * 109.46801 * 299.99202 * 1 2 3 26 26 H 1.08997 * 109.46953 * 59.99735 * 1 2 3 27 27 H 1.08998 * 109.47014 * 179.97438 * 1 2 3 28 28 H 1.09011 * 109.46925 * 240.00030 * 2 1 3 29 29 H 1.08998 * 109.47216 * 180.02562 * 3 2 1 30 30 H 1.08997 * 109.47333 * 300.00597 * 3 2 1 31 31 H 1.09001 * 109.46527 * 60.00630 * 3 2 1 32 32 H 1.08999 * 109.52162 * 57.68858 * 6 4 2 33 33 H 1.08997 * 109.52066 * 297.50536 * 6 4 2 34 34 H 0.97003 * 120.00215 * 180.02562 * 11 10 8 35 35 H 1.08003 * 119.99517 * 0.09088 * 17 16 7 36 36 H 1.07996 * 119.99258 * 180.37254 * 18 17 16 37 37 H 1.07999 * 120.00002 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.99974 * 179.97438 * 20 19 18 39 39 H 1.07999 * 120.00034 * 179.97438 * 21 20 19 40 40 H 1.08998 * 109.52211 * 176.89097 * 22 7 6 41 41 H 1.09001 * 109.52380 * 297.01295 * 22 7 6 42 42 H 1.09000 * 109.47720 * 62.37216 * 23 22 7 43 43 H 1.09002 * 109.47831 * 182.40853 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 1.2492 5 1 1.6771 -1.7492 1.2490 6 6 3.5710 -0.7211 1.2499 7 6 4.0733 -1.3915 2.5322 8 6 5.5782 -1.3288 2.5798 9 1 6.1246 -0.8542 1.7781 10 6 6.2577 -1.8773 3.6469 11 7 5.5992 -2.5252 4.5828 12 14 8.1137 -1.7001 3.7629 13 1 8.4713 -0.2597 3.8121 14 1 8.5990 -2.3725 4.9950 15 1 8.7461 -2.3269 2.5745 16 6 3.6277 -2.8309 2.5564 17 6 2.9671 -3.3315 3.6628 18 6 2.5579 -4.6517 3.6847 19 6 2.8109 -5.4718 2.6011 20 6 3.4736 -4.9719 1.4958 21 6 3.8828 -3.6517 1.4738 22 6 3.4912 -0.6545 3.7424 23 6 1.9634 -0.6574 3.6453 24 8 1.5639 -0.0479 2.4161 25 1 -0.3633 0.5137 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8901 32 1 3.9350 0.3055 1.2089 33 1 3.9357 -1.2727 0.3835 34 1 6.0771 -2.9108 5.3337 35 1 2.7691 -2.6905 4.5092 36 1 2.0365 -5.0411 4.5466 37 1 2.4915 -6.5034 2.6184 38 1 3.6716 -5.6128 0.6493 39 1 4.4009 -3.2612 0.6104 40 1 3.7991 -1.1585 4.6585 41 1 3.8546 0.3731 3.7524 42 1 1.5992 -1.6842 3.6768 43 1 1.5450 -0.0973 4.4816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000548962.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:26 Heat of formation + Delta-G solvation = -44.728223 kcal Electronic energy + Delta-G solvation = -22913.263625 eV Core-core repulsion = 19922.276206 eV Total energy + Delta-G solvation = -2990.987419 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.35924 -39.05132 -36.43574 -35.70055 -33.42368 -31.95201 -30.43495 -30.24700 -28.07768 -27.75849 -24.86154 -24.37969 -22.91092 -22.69099 -20.88549 -20.00297 -18.39480 -17.64513 -16.82596 -16.68465 -16.20277 -15.96347 -15.54361 -15.21117 -14.86693 -14.68718 -14.44131 -14.29904 -13.91001 -13.76124 -13.24644 -13.16708 -12.85126 -12.82669 -12.60131 -12.54671 -12.34978 -12.27578 -12.05766 -11.86472 -11.77460 -11.56665 -11.43749 -11.23098 -10.83289 -10.62205 -10.41458 -10.02695 -9.39128 -9.04133 -7.94379 -6.14177 0.89487 0.99186 1.39952 1.42122 1.47006 2.44173 3.05542 3.21640 3.36167 3.94844 4.05450 4.24375 4.31403 4.36300 4.41130 4.48422 4.49958 4.57341 4.61293 4.67183 4.78727 4.81894 4.87094 4.94312 4.99615 5.07696 5.08885 5.12569 5.14615 5.28529 5.30150 5.40765 5.48410 5.55041 5.55877 5.60821 5.70710 5.76233 5.89789 5.95202 6.11340 6.33411 6.46670 6.54251 6.55879 6.89338 7.51036 8.97639 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.008447 C = 0.006697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.343862 B = 3313.839412 C = 4180.273885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.139 4.139 4 C 0.102 3.898 5 H 0.039 0.961 6 C -0.122 4.122 7 C 0.096 3.904 8 C -0.523 4.523 9 H 0.046 0.954 10 C 0.034 3.966 11 N -0.884 5.884 12 Si 0.934 3.066 13 H -0.277 1.277 14 H -0.288 1.288 15 H -0.280 1.280 16 C -0.006 4.006 17 C -0.104 4.104 18 C -0.143 4.143 19 C -0.154 4.154 20 C -0.138 4.138 21 C -0.144 4.144 22 C -0.131 4.131 23 C 0.053 3.947 24 O -0.386 6.386 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.256 0.744 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.103 0.897 40 H 0.075 0.925 41 H 0.031 0.969 42 H 0.053 0.947 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.626 0.360 -5.741 10.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.106 4.106 3 C -0.196 4.196 4 C 0.044 3.956 5 H 0.057 0.943 6 C -0.160 4.160 7 C 0.095 3.905 8 C -0.561 4.561 9 H 0.064 0.936 10 C -0.167 4.167 11 N -0.521 5.521 12 Si 0.762 3.238 13 H -0.202 1.202 14 H -0.214 1.214 15 H -0.205 1.205 16 C -0.006 4.006 17 C -0.122 4.122 18 C -0.161 4.161 19 C -0.172 4.172 20 C -0.156 4.156 21 C -0.163 4.163 22 C -0.170 4.170 23 C -0.023 4.023 24 O -0.306 6.306 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.151 0.849 38 H 0.147 0.853 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.708 0.431 -5.570 10.346 hybrid contribution 1.849 -0.247 0.599 1.960 sum -6.859 0.184 -4.971 8.473 Atomic orbital electron populations 1.21708 0.93936 1.01604 1.02098 1.21200 0.97035 0.97028 0.95346 1.21752 1.00570 0.95450 1.01813 1.22085 0.92904 0.94553 0.86021 0.94312 1.22195 0.95251 1.00234 0.98301 1.17264 0.93543 0.88191 0.91460 1.21175 0.91513 1.37518 1.05897 0.93550 1.25432 1.00752 0.94634 0.95925 1.70011 1.35827 1.34948 1.11343 0.85993 0.82810 0.77996 0.77024 1.20223 1.21358 1.20525 1.20077 0.91004 0.97270 0.92265 1.21075 0.98141 0.95493 0.97531 1.21272 1.01714 0.94221 0.98886 1.21108 1.01886 0.99950 0.94231 1.21196 0.99998 0.95242 0.99116 1.20982 1.01607 0.94555 0.99119 1.22080 0.93970 0.98798 1.02108 1.22946 0.95046 0.97922 0.86377 1.87742 1.74629 1.54381 1.13846 0.92977 0.91135 0.93108 0.89628 0.93434 0.91241 0.93188 0.92548 0.92500 0.93419 0.87271 0.85827 0.84879 0.85275 0.87846 0.90681 0.94998 0.92906 0.89052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 9.05 71.98 0.65 -2.70 16 2 C -0.09 -2.49 2.81 -10.79 -0.03 -2.52 16 3 C -0.14 -3.78 8.70 71.98 0.63 -3.15 16 4 C 0.10 3.62 2.15 30.63 0.07 3.68 16 5 H 0.04 1.47 7.38 -2.39 -0.02 1.45 16 6 C -0.12 -4.92 3.64 30.68 0.11 -4.81 16 7 C 0.10 4.40 0.35 -53.56 -0.02 4.38 16 8 C -0.52 -27.22 7.84 25.60 0.20 -27.02 16 9 H 0.05 2.45 7.75 -2.91 -0.02 2.42 16 10 C 0.03 1.79 5.15 84.66 0.44 2.23 16 11 N -0.88 -47.18 9.57 21.45 0.21 -46.97 16 12 Si 0.93 42.89 29.54 68.60 2.03 44.92 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 16 C -0.01 -0.25 2.46 -19.87 -0.05 -0.30 16 17 C -0.10 -4.50 6.10 22.27 0.14 -4.36 16 18 C -0.14 -5.42 10.05 22.27 0.22 -5.20 16 19 C -0.15 -5.40 10.05 22.27 0.22 -5.18 16 20 C -0.14 -5.06 10.05 22.27 0.22 -4.84 16 21 C -0.14 -6.11 8.96 22.27 0.20 -5.91 16 22 C -0.13 -5.91 4.13 30.69 0.13 -5.78 16 23 C 0.05 2.04 6.18 72.01 0.45 2.48 16 24 O -0.39 -14.48 9.06 -148.98 -1.35 -15.83 16 25 H 0.05 1.39 7.68 -2.39 -0.02 1.37 16 26 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 29 H 0.05 1.39 6.38 -2.39 -0.02 1.37 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.47 7.68 -2.39 -0.02 1.45 16 32 H 0.06 2.33 6.32 -2.39 -0.02 2.31 16 33 H 0.06 2.25 6.89 -2.39 -0.02 2.23 16 34 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.11 4.82 4.93 -2.91 -0.01 4.81 16 36 H 0.12 4.02 8.06 -2.91 -0.02 3.99 16 37 H 0.13 3.74 8.06 -2.91 -0.02 3.72 16 38 H 0.13 3.93 8.06 -2.91 -0.02 3.91 16 39 H 0.10 4.32 7.09 -2.91 -0.02 4.30 16 40 H 0.07 3.70 5.17 -2.39 -0.01 3.69 16 41 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.05 2.03 5.14 -2.39 -0.01 2.02 16 43 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -56.08 320.88 5.43 -50.64 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.98 Total: 26.25 kcal Atomic # 6 Polarization: -62.59 SS G_CDS: 3.57 Total: -59.02 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.21 Total: -46.97 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -1.35 Total: -15.83 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -56.08 5.43 -50.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000548962.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.914 kcal (2) G-P(sol) polarization free energy of solvation -56.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds