Wall clock time and date at job start Mon Mar 30 2020 02:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 C 1.52999 * 109.47366 * 240.00336 * 2 1 3 5 5 H 1.09005 * 109.48118 * 304.97547 * 4 2 1 6 6 C 1.53092 * 109.48249 * 184.94016 * 4 2 1 7 7 C 1.53184 * 109.16180 * 182.40783 * 6 4 2 8 8 C 1.50698 * 109.54218 * 297.11000 * 7 6 4 9 9 H 1.08000 * 119.99441 * 114.64163 * 8 7 6 10 10 C 1.37869 * 120.00038 * 294.63834 * 8 7 6 11 11 N 1.31515 * 120.00249 * 6.38613 * 10 8 7 12 12 Si 1.86808 * 119.99863 * 186.38621 * 10 8 7 13 13 H 1.48497 * 109.46783 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.46993 * 119.99944 * 12 10 8 15 15 H 1.48504 * 109.46908 * 239.99598 * 12 10 8 16 16 C 1.50709 * 109.61218 * 176.88997 * 7 6 4 17 17 C 1.38231 * 120.00130 * 355.36300 * 16 7 6 18 18 C 1.38230 * 120.00154 * 179.74257 * 17 16 7 19 19 C 1.38238 * 119.99820 * 0.53295 * 18 17 16 20 20 C 1.38241 * 119.99832 * 359.74320 * 19 18 17 21 21 C 1.38227 * 119.99649 * 175.63700 * 16 7 6 22 22 C 1.53180 * 109.03466 * 56.98197 * 7 6 4 23 23 C 1.53091 * 109.16244 * 303.01379 * 22 7 6 24 24 O 1.42901 * 109.41413 * 57.61366 * 23 22 7 25 25 H 1.08994 * 109.47489 * 60.00567 * 1 2 3 26 26 H 1.08995 * 109.47111 * 299.99280 * 1 2 3 27 27 H 1.09010 * 109.46514 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47769 * 119.99899 * 2 1 3 29 29 H 1.09007 * 109.47189 * 300.00181 * 3 2 1 30 30 H 1.08999 * 109.46923 * 59.99750 * 3 2 1 31 31 H 1.09000 * 109.46997 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.51912 * 302.31326 * 6 4 2 33 33 H 1.08993 * 109.52101 * 62.50187 * 6 4 2 34 34 H 0.97001 * 120.00234 * 180.02562 * 11 10 8 35 35 H 1.07999 * 120.00112 * 359.97438 * 17 16 7 36 36 H 1.07997 * 120.00569 * 180.29545 * 18 17 16 37 37 H 1.07997 * 120.00624 * 179.76389 * 19 18 17 38 38 H 1.08000 * 120.00345 * 180.02562 * 20 19 18 39 39 H 1.08008 * 120.00335 * 0.02562 * 21 16 7 40 40 H 1.09002 * 109.51738 * 183.11600 * 22 7 6 41 41 H 1.08998 * 109.57692 * 62.95870 * 22 7 6 42 42 H 1.09001 * 109.48330 * 297.63234 * 23 22 7 43 43 H 1.09002 * 109.48867 * 177.60329 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6059 -1.7200 -1.2952 6 6 3.5659 -0.8298 -1.1889 7 6 4.0734 -1.4987 -2.4701 8 6 3.5296 -2.9015 -2.5559 9 1 2.8419 -3.1666 -3.3452 10 6 3.9101 -3.8463 -1.6267 11 7 4.6461 -3.4950 -0.5950 12 14 3.3802 -5.6257 -1.8333 13 1 2.5638 -5.7590 -3.0666 14 1 4.5823 -6.4912 -1.9388 15 1 2.5727 -6.0413 -0.6583 16 6 5.5798 -1.5419 -2.4556 17 6 6.2789 -0.9347 -1.4292 18 6 7.6604 -0.9789 -1.4131 19 6 8.3432 -1.6210 -2.4292 20 6 7.6443 -2.2234 -3.4586 21 6 6.2626 -2.1840 -3.4716 22 6 3.5957 -0.6889 -3.6794 23 6 2.0687 -0.5858 -3.6436 24 8 1.6620 0.0167 -2.4133 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 3.9988 0.1668 -1.1021 33 1 3.8544 -1.4297 -0.3259 34 1 4.9141 -4.1598 0.0585 35 1 5.7456 -0.4289 -0.6380 36 1 8.2064 -0.5086 -0.6087 37 1 9.4227 -1.6524 -2.4187 38 1 8.1777 -2.7254 -4.2522 39 1 5.7165 -2.6543 -4.2761 40 1 3.9056 -1.1882 -4.5975 41 1 4.0293 0.3105 -3.6441 42 1 1.6351 -1.5828 -3.7209 43 1 1.7258 0.0254 -4.4785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000548963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:29 Heat of formation + Delta-G solvation = -40.237492 kcal Electronic energy + Delta-G solvation = -22774.626533 eV Core-core repulsion = 19783.833847 eV Total energy + Delta-G solvation = -2990.792686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.38656 -37.72470 -34.80527 -34.05066 -31.55177 -30.06819 -29.20344 -28.66076 -26.70151 -25.52471 -23.64036 -22.96403 -21.02675 -20.95564 -19.16557 -18.74901 -16.28846 -15.89270 -15.22959 -14.98096 -14.54588 -14.16532 -13.85794 -13.78011 -13.42047 -13.27721 -12.75040 -12.57110 -12.33667 -12.19697 -11.84051 -11.61775 -11.53874 -11.22839 -10.95859 -10.94343 -10.79375 -10.55510 -10.38784 -10.30309 -10.11604 -9.88660 -9.83176 -9.36956 -9.21968 -9.01562 -8.43528 -8.21621 -7.84766 -7.45014 -6.03312 -4.13731 2.48243 2.54786 3.24250 3.34139 3.35935 4.36765 4.67965 4.93022 5.23069 5.44158 5.54601 5.60457 5.78953 5.85507 5.88294 6.04021 6.05061 6.08065 6.17597 6.20485 6.26405 6.34903 6.37189 6.42214 6.53565 6.55694 6.60219 6.64190 6.74663 6.76912 6.85670 6.90963 6.97211 7.05558 7.18407 7.21612 7.34128 7.47125 7.60691 7.65593 7.85423 8.00500 8.14088 8.27859 8.35466 8.85214 9.51378 10.97052 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.008725 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.345885 B = 3208.552608 C = 4058.320745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.089 4.089 3 C -0.139 4.139 4 C 0.108 3.892 5 H 0.063 0.937 6 C -0.130 4.130 7 C 0.101 3.899 8 C -0.512 4.512 9 H 0.059 0.941 10 C 0.076 3.924 11 N -0.868 5.868 12 Si 0.880 3.120 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.285 1.285 16 C 0.013 3.987 17 C -0.106 4.106 18 C -0.132 4.132 19 C -0.156 4.156 20 C -0.135 4.135 21 C -0.112 4.112 22 C -0.134 4.134 23 C 0.074 3.926 24 O -0.392 6.392 25 H 0.058 0.942 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.040 0.960 31 H 0.055 0.945 32 H 0.032 0.968 33 H 0.099 0.901 34 H 0.260 0.740 35 H 0.112 0.888 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.057 0.943 41 H 0.044 0.956 42 H 0.052 0.948 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.235 5.705 -1.023 5.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 C -0.196 4.196 4 C 0.051 3.949 5 H 0.081 0.919 6 C -0.167 4.167 7 C 0.101 3.899 8 C -0.549 4.549 9 H 0.077 0.923 10 C -0.128 4.128 11 N -0.504 5.504 12 Si 0.708 3.292 13 H -0.198 1.198 14 H -0.211 1.211 15 H -0.211 1.211 16 C 0.012 3.988 17 C -0.124 4.124 18 C -0.150 4.150 19 C -0.174 4.174 20 C -0.153 4.153 21 C -0.130 4.130 22 C -0.172 4.172 23 C -0.002 4.002 24 O -0.312 6.312 25 H 0.077 0.923 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.130 0.870 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.249 5.797 -0.836 5.988 hybrid contribution 0.153 -1.595 0.025 1.602 sum -1.096 4.202 -0.811 4.418 Atomic orbital electron populations 1.21772 0.95851 1.01194 1.01014 1.21161 0.95324 0.96661 0.97565 1.21746 1.01073 0.96050 1.00729 1.22028 0.95645 0.93778 0.83473 0.91865 1.22296 0.93616 0.98094 1.02726 1.17252 0.87689 0.94448 0.90522 1.20944 1.27872 0.93459 1.12651 0.92307 1.24868 0.94757 0.98222 0.94989 1.69881 1.35872 1.33389 1.11228 0.86719 0.78397 0.85964 0.78091 1.19827 1.21056 1.21149 1.20106 0.96750 0.90603 0.91329 1.21000 0.93014 1.00003 0.98382 1.20905 0.94898 1.01034 0.98151 1.20722 0.98190 1.02064 0.96415 1.20898 0.94738 1.01127 0.98574 1.20862 0.93028 0.99523 0.99602 1.22163 0.96026 0.99074 0.99930 1.22349 0.94623 0.97501 0.85767 1.87686 1.79050 1.50396 1.14067 0.92314 0.93764 0.93208 0.90747 0.92239 0.94127 0.92641 0.94920 0.88304 0.93008 0.86993 0.88105 0.88223 0.88084 0.87151 0.92385 0.93684 0.92963 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.09 37.16 0.34 -1.80 16 2 C -0.09 -1.51 2.76 -90.62 -0.25 -1.76 16 3 C -0.14 -2.18 8.75 37.16 0.33 -1.85 16 4 C 0.11 2.15 2.10 -26.68 -0.06 2.09 16 5 H 0.06 1.41 7.38 -51.93 -0.38 1.02 16 6 C -0.13 -2.78 2.55 -26.59 -0.07 -2.84 16 7 C 0.10 2.24 0.35 -156.62 -0.05 2.19 16 8 C -0.51 -12.43 5.80 -34.44 -0.20 -12.63 16 9 H 0.06 1.45 6.74 -52.49 -0.35 1.10 16 10 C 0.08 1.90 5.13 -17.82 -0.09 1.81 16 11 N -0.87 -22.49 10.30 55.43 0.57 -21.92 16 12 Si 0.88 20.30 29.54 -169.99 -5.02 15.27 16 13 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 14 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 16 C 0.01 0.28 3.44 -104.62 -0.36 -0.08 16 17 C -0.11 -2.29 8.78 -39.59 -0.35 -2.64 16 18 C -0.13 -2.60 10.05 -39.58 -0.40 -2.99 16 19 C -0.16 -2.95 10.05 -39.58 -0.40 -3.35 16 20 C -0.14 -2.66 10.05 -39.58 -0.40 -3.05 16 21 C -0.11 -2.42 8.86 -39.59 -0.35 -2.78 16 22 C -0.13 -2.67 4.70 -26.59 -0.13 -2.79 16 23 C 0.07 1.39 6.61 37.20 0.25 1.64 16 24 O -0.39 -7.68 9.06 -35.23 -0.32 -8.00 16 25 H 0.06 0.90 7.82 -51.93 -0.41 0.50 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 0.96 7.56 -51.93 -0.39 0.57 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.90 6.51 -51.93 -0.34 0.56 16 32 H 0.03 0.68 5.43 -51.93 -0.28 0.40 16 33 H 0.10 2.37 6.00 -51.93 -0.31 2.06 16 34 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 35 H 0.11 2.39 5.91 -52.49 -0.31 2.08 16 36 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 39 H 0.11 2.35 7.79 -52.48 -0.41 1.94 16 40 H 0.06 1.12 7.81 -51.93 -0.41 0.71 16 41 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 1.02 6.77 -51.93 -0.35 0.67 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 326.34 15.07 4.92 4.92 Total: -1.00 -25.72 326.34 -8.92 -34.64 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -6.88 Total: 5.93 kcal Atomic # 6 Polarization: -28.66 SS G_CDS: -2.19 Total: -30.85 kcal Atomic # 7 Polarization: -22.49 SS G_CDS: 0.57 Total: -21.92 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.32 Total: -8.00 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -25.72 -8.92 -34.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000548963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.597 kcal (2) G-P(sol) polarization free energy of solvation -25.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds