Wall clock time and date at job start Mon Mar 30 2020 02:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46864 * 2 1 4 4 C 1.52999 * 109.47366 * 240.00336 * 2 1 3 5 5 H 1.09005 * 109.48118 * 304.97547 * 4 2 1 6 6 C 1.53092 * 109.48249 * 184.94016 * 4 2 1 7 7 C 1.53184 * 109.16180 * 182.40783 * 6 4 2 8 8 C 1.50698 * 109.54218 * 297.11000 * 7 6 4 9 9 H 1.08000 * 119.99441 * 114.64163 * 8 7 6 10 10 C 1.37869 * 120.00038 * 294.63834 * 8 7 6 11 11 N 1.31515 * 120.00249 * 6.38613 * 10 8 7 12 12 Si 1.86808 * 119.99863 * 186.38621 * 10 8 7 13 13 H 1.48497 * 109.46783 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.46993 * 119.99944 * 12 10 8 15 15 H 1.48504 * 109.46908 * 239.99598 * 12 10 8 16 16 C 1.50709 * 109.61218 * 176.88997 * 7 6 4 17 17 C 1.38231 * 120.00130 * 355.36300 * 16 7 6 18 18 C 1.38230 * 120.00154 * 179.74257 * 17 16 7 19 19 C 1.38238 * 119.99820 * 0.53295 * 18 17 16 20 20 C 1.38241 * 119.99832 * 359.74320 * 19 18 17 21 21 C 1.38227 * 119.99649 * 175.63700 * 16 7 6 22 22 C 1.53180 * 109.03466 * 56.98197 * 7 6 4 23 23 C 1.53091 * 109.16244 * 303.01379 * 22 7 6 24 24 O 1.42901 * 109.41413 * 57.61366 * 23 22 7 25 25 H 1.08994 * 109.47489 * 60.00567 * 1 2 3 26 26 H 1.08995 * 109.47111 * 299.99280 * 1 2 3 27 27 H 1.09010 * 109.46514 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47769 * 119.99899 * 2 1 3 29 29 H 1.09007 * 109.47189 * 300.00181 * 3 2 1 30 30 H 1.08999 * 109.46923 * 59.99750 * 3 2 1 31 31 H 1.09000 * 109.46997 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.51912 * 302.31326 * 6 4 2 33 33 H 1.08993 * 109.52101 * 62.50187 * 6 4 2 34 34 H 0.97001 * 120.00234 * 180.02562 * 11 10 8 35 35 H 1.07999 * 120.00112 * 359.97438 * 17 16 7 36 36 H 1.07997 * 120.00569 * 180.29545 * 18 17 16 37 37 H 1.07997 * 120.00624 * 179.76389 * 19 18 17 38 38 H 1.08000 * 120.00345 * 180.02562 * 20 19 18 39 39 H 1.08008 * 120.00335 * 0.02562 * 21 16 7 40 40 H 1.09002 * 109.51738 * 183.11600 * 22 7 6 41 41 H 1.08998 * 109.57692 * 62.95870 * 22 7 6 42 42 H 1.09001 * 109.48330 * 297.63234 * 23 22 7 43 43 H 1.09002 * 109.48867 * 177.60329 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.6059 -1.7200 -1.2952 6 6 3.5659 -0.8298 -1.1889 7 6 4.0734 -1.4987 -2.4701 8 6 3.5296 -2.9015 -2.5559 9 1 2.8419 -3.1666 -3.3452 10 6 3.9101 -3.8463 -1.6267 11 7 4.6461 -3.4950 -0.5950 12 14 3.3802 -5.6257 -1.8333 13 1 2.5638 -5.7590 -3.0666 14 1 4.5823 -6.4912 -1.9388 15 1 2.5727 -6.0413 -0.6583 16 6 5.5798 -1.5419 -2.4556 17 6 6.2789 -0.9347 -1.4292 18 6 7.6604 -0.9789 -1.4131 19 6 8.3432 -1.6210 -2.4292 20 6 7.6443 -2.2234 -3.4586 21 6 6.2626 -2.1840 -3.4716 22 6 3.5957 -0.6889 -3.6794 23 6 2.0687 -0.5858 -3.6436 24 8 1.6620 0.0167 -2.4133 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8934 -0.5138 0.8899 29 1 1.6765 1.9564 -0.8900 30 1 1.6765 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 3.9988 0.1668 -1.1021 33 1 3.8544 -1.4297 -0.3259 34 1 4.9141 -4.1598 0.0585 35 1 5.7456 -0.4289 -0.6380 36 1 8.2064 -0.5086 -0.6087 37 1 9.4227 -1.6524 -2.4187 38 1 8.1777 -2.7254 -4.2522 39 1 5.7165 -2.6543 -4.2761 40 1 3.9056 -1.1882 -4.5975 41 1 4.0293 0.3105 -3.6441 42 1 1.6351 -1.5828 -3.7209 43 1 1.7258 0.0254 -4.4785 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000548963.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:28 Heat of formation + Delta-G solvation = -50.619261 kcal Electronic energy + Delta-G solvation = -22775.076720 eV Core-core repulsion = 19783.833847 eV Total energy + Delta-G solvation = -2991.242873 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.00893 -39.28116 -36.31326 -35.64964 -33.40031 -31.64750 -30.76972 -30.23416 -28.00243 -27.32480 -25.26449 -24.55910 -22.58701 -22.52277 -20.65122 -20.48379 -17.98206 -17.56772 -16.79069 -16.70830 -16.20901 -15.73698 -15.47466 -15.29349 -15.01662 -14.79501 -14.29382 -14.10662 -13.88090 -13.71019 -13.37028 -13.22699 -12.97317 -12.85574 -12.69891 -12.51958 -12.40875 -12.14348 -12.03269 -11.82730 -11.58924 -11.55128 -11.36377 -11.08102 -10.86926 -10.71988 -10.28040 -9.88392 -9.44040 -9.08534 -7.95275 -6.08811 0.87801 0.97100 1.36820 1.43400 1.48795 2.45649 3.14888 3.25924 3.35478 4.02894 4.16988 4.28579 4.31543 4.34014 4.36864 4.49674 4.54305 4.60420 4.67914 4.76116 4.86490 4.89179 4.91841 4.98176 5.04099 5.10406 5.13307 5.16183 5.23042 5.26108 5.35107 5.37342 5.46858 5.56585 5.60471 5.61217 5.72104 5.75244 5.89649 5.97006 6.08817 6.29330 6.51724 6.55405 6.66459 6.94541 7.56247 9.01701 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.008725 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.345885 B = 3208.552608 C = 4058.320745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.090 4.090 3 C -0.132 4.132 4 C 0.113 3.887 5 H 0.034 0.966 6 C -0.116 4.116 7 C 0.093 3.907 8 C -0.508 4.508 9 H 0.049 0.951 10 C 0.041 3.959 11 N -0.883 5.883 12 Si 0.922 3.078 13 H -0.271 1.271 14 H -0.290 1.290 15 H -0.287 1.287 16 C -0.007 4.007 17 C -0.125 4.125 18 C -0.135 4.135 19 C -0.155 4.155 20 C -0.137 4.137 21 C -0.134 4.134 22 C -0.130 4.130 23 C 0.073 3.927 24 O -0.390 6.390 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.071 0.929 34 H 0.254 0.746 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.104 0.896 40 H 0.060 0.940 41 H 0.047 0.953 42 H 0.039 0.961 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 6.580 -1.249 6.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.109 4.109 3 C -0.189 4.189 4 C 0.055 3.945 5 H 0.052 0.948 6 C -0.154 4.154 7 C 0.093 3.907 8 C -0.546 4.546 9 H 0.067 0.933 10 C -0.161 4.161 11 N -0.521 5.521 12 Si 0.750 3.250 13 H -0.196 1.196 14 H -0.217 1.217 15 H -0.214 1.214 16 C -0.007 4.007 17 C -0.143 4.143 18 C -0.153 4.153 19 C -0.173 4.173 20 C -0.155 4.155 21 C -0.153 4.153 22 C -0.168 4.168 23 C -0.003 4.003 24 O -0.310 6.310 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.063 0.937 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.122 0.878 40 H 0.078 0.922 41 H 0.066 0.934 42 H 0.058 0.942 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.886 6.673 -1.074 6.817 hybrid contribution 0.081 -1.861 0.062 1.864 sum -0.806 4.812 -1.012 4.983 Atomic orbital electron populations 1.21713 0.94107 1.01243 1.02128 1.21174 0.96830 0.97220 0.95643 1.21675 1.00353 0.95037 1.01804 1.21920 0.94521 0.93021 0.85024 0.94816 1.22093 0.94648 0.97391 1.01294 1.17318 0.88126 0.93647 0.91656 1.21087 1.27034 0.94705 1.11732 0.93281 1.25306 0.95275 1.00365 0.95156 1.70000 1.36981 1.33472 1.11624 0.86064 0.77684 0.83397 0.77830 1.19591 1.21703 1.21370 1.20177 0.96803 0.91607 0.92116 1.21072 0.94183 1.00852 0.98240 1.21246 0.94287 1.00708 0.99090 1.21125 0.99984 1.00729 0.95450 1.21243 0.94075 1.00693 0.99491 1.20971 0.94262 1.00377 0.99641 1.22110 0.96807 0.98752 0.99089 1.22451 0.93802 0.97650 0.86425 1.87693 1.78932 1.50196 1.14164 0.92504 0.91281 0.93738 0.91329 0.92558 0.91590 0.93691 0.94717 0.91072 0.93676 0.87747 0.85577 0.84794 0.85392 0.87780 0.92153 0.93437 0.94229 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.09 71.98 0.65 -3.23 16 2 C -0.09 -3.03 2.76 -10.79 -0.03 -3.06 16 3 C -0.13 -3.94 8.75 71.98 0.63 -3.31 16 4 C 0.11 4.53 2.10 30.62 0.06 4.59 16 5 H 0.03 1.55 7.38 -2.38 -0.02 1.53 16 6 C -0.12 -5.09 2.55 30.69 0.08 -5.01 16 7 C 0.09 4.17 0.35 -53.55 -0.02 4.15 16 8 C -0.51 -25.14 5.80 25.60 0.15 -24.99 16 9 H 0.05 2.47 6.74 -2.91 -0.02 2.45 16 10 C 0.04 2.07 5.13 84.65 0.43 2.51 16 11 N -0.88 -46.77 10.30 21.44 0.22 -46.54 16 12 Si 0.92 42.22 29.54 68.60 2.03 44.24 16 13 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 14 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 15 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 16 C -0.01 -0.29 3.44 -19.87 -0.07 -0.36 16 17 C -0.13 -5.42 8.78 22.27 0.20 -5.22 16 18 C -0.14 -5.12 10.05 22.27 0.22 -4.89 16 19 C -0.16 -5.48 10.05 22.27 0.22 -5.26 16 20 C -0.14 -5.14 10.05 22.27 0.22 -4.91 16 21 C -0.13 -5.78 8.86 22.27 0.20 -5.58 16 22 C -0.13 -5.14 4.70 30.68 0.14 -5.00 16 23 C 0.07 2.69 6.61 72.01 0.48 3.17 16 24 O -0.39 -15.03 9.06 -148.98 -1.35 -16.38 16 25 H 0.06 1.65 7.82 -2.39 -0.02 1.63 16 26 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.04 1.31 8.14 -2.38 -0.02 1.29 16 28 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.06 1.71 7.56 -2.38 -0.02 1.70 16 30 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.04 1.42 6.51 -2.39 -0.02 1.40 16 32 H 0.03 1.47 5.43 -2.38 -0.01 1.46 16 33 H 0.07 3.53 6.00 -2.39 -0.01 3.51 16 34 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 35 H 0.10 4.55 5.91 -2.91 -0.02 4.53 16 36 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 37 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 38 H 0.13 4.01 8.06 -2.91 -0.02 3.98 16 39 H 0.10 4.47 7.79 -2.91 -0.02 4.45 16 40 H 0.06 2.32 7.81 -2.39 -0.02 2.31 16 41 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.04 1.55 6.77 -2.39 -0.02 1.54 16 43 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -54.78 326.34 5.45 -49.34 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.97 Total: 25.75 kcal Atomic # 6 Polarization: -59.98 SS G_CDS: 3.58 Total: -56.40 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.22 Total: -46.54 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -1.35 Total: -16.38 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.24 kcal Total: -54.78 5.45 -49.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000548963.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.284 kcal (2) G-P(sol) polarization free energy of solvation -54.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds