Wall clock time and date at job start Mon Mar 30 2020 02:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46894 * 2 1 4 4 C 1.52998 * 109.47216 * 119.99905 * 2 1 3 5 5 H 1.09009 * 109.47734 * 60.02246 * 4 2 1 6 6 C 1.53098 * 109.49340 * 179.97438 * 4 2 1 7 7 C 1.53181 * 109.15696 * 177.51142 * 6 4 2 8 8 C 1.50696 * 109.54577 * 63.06111 * 7 6 4 9 9 H 1.07999 * 120.00001 * 358.63937 * 8 7 6 10 10 C 1.37876 * 120.00299 * 178.63451 * 8 7 6 11 11 N 1.31516 * 119.99955 * 353.87790 * 10 8 7 12 12 Si 1.86802 * 120.00210 * 173.87752 * 10 8 7 13 13 H 1.48501 * 109.47011 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.46955 * 120.00276 * 12 10 8 15 15 H 1.48493 * 109.47307 * 240.00026 * 12 10 8 16 16 C 1.50693 * 109.54415 * 183.24485 * 7 6 4 17 17 C 1.38236 * 120.00513 * 113.89210 * 16 7 6 18 18 C 1.38235 * 120.00314 * 180.27834 * 17 16 7 19 19 C 1.38240 * 119.99678 * 359.45981 * 18 17 16 20 20 C 1.38232 * 119.99969 * 0.55787 * 19 18 17 21 21 C 1.38231 * 119.99732 * 293.90735 * 16 7 6 22 22 C 1.53182 * 109.10739 * 303.15252 * 7 6 4 23 23 C 1.53097 * 109.16470 * 56.93575 * 22 7 6 24 24 O 1.42902 * 109.41550 * 302.39209 * 23 22 7 25 25 H 1.08989 * 109.47422 * 299.99983 * 1 2 3 26 26 H 1.09003 * 109.46688 * 60.00100 * 1 2 3 27 27 H 1.09005 * 109.47156 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47276 * 240.00071 * 2 1 3 29 29 H 1.08999 * 109.47093 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47285 * 299.99845 * 3 2 1 31 31 H 1.09003 * 109.47101 * 59.99964 * 3 2 1 32 32 H 1.08994 * 109.45578 * 57.65293 * 6 4 2 33 33 H 1.08996 * 109.59996 * 297.45610 * 6 4 2 34 34 H 0.97002 * 120.00302 * 179.97438 * 11 10 8 35 35 H 1.08003 * 119.99541 * 359.97438 * 17 16 7 36 36 H 1.07998 * 120.00254 * 179.71926 * 18 17 16 37 37 H 1.08000 * 119.99950 * 180.27886 * 19 18 17 38 38 H 1.08007 * 120.00193 * 179.72108 * 20 19 18 39 39 H 1.08007 * 120.00188 * 0.02562 * 21 16 7 40 40 H 1.09003 * 109.52503 * 176.84181 * 22 7 6 41 41 H 1.09001 * 109.52372 * 296.96487 * 22 7 6 42 42 H 1.09003 * 109.47677 * 62.37156 * 23 22 7 43 43 H 1.08995 * 109.47989 * 182.39208 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6771 -1.7491 1.2492 6 6 3.5710 -0.7221 1.2494 7 6 4.0732 -1.3905 2.5329 8 6 3.6301 -2.8306 2.5580 9 1 3.0297 -3.2250 1.7515 10 6 3.9912 -3.6449 3.6104 11 7 4.8201 -3.2018 4.5303 12 14 3.3031 -5.3774 3.7297 13 1 2.4000 -5.6318 2.5786 14 1 4.4197 -6.3561 3.7080 15 1 2.5429 -5.5220 4.9971 16 6 5.5780 -1.3251 2.5799 17 6 6.2070 -0.5672 3.5498 18 6 7.5873 -0.5026 3.5893 19 6 8.3388 -1.2049 2.6658 20 6 7.7098 -1.9625 1.6956 21 6 6.3293 -2.0228 1.6529 22 6 3.4903 -0.6540 3.7430 23 6 1.9624 -0.6577 3.6455 24 8 1.5634 -0.0479 2.4162 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1299 1.4426 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9563 0.8900 32 1 3.9346 0.3046 1.2072 33 1 3.9364 -1.2748 0.3840 34 1 5.0739 -3.7745 5.2709 35 1 5.6199 -0.0215 4.2737 36 1 8.0786 0.0932 4.3443 37 1 9.4172 -1.1581 2.6994 38 1 8.2968 -2.5077 0.9712 39 1 5.8379 -2.6145 0.8946 40 1 3.7980 -1.1581 4.6592 41 1 3.8531 0.3738 3.7533 42 1 1.5987 -1.6848 3.6766 43 1 1.5435 -0.0982 4.4818 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000548964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:31 Heat of formation + Delta-G solvation = -50.341571 kcal Electronic energy + Delta-G solvation = -22680.714889 eV Core-core repulsion = 19689.484057 eV Total energy + Delta-G solvation = -2991.230832 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.02170 -39.29126 -36.39249 -35.57592 -33.39335 -31.64341 -30.52604 -30.50023 -28.03327 -27.27952 -25.29218 -24.56188 -22.80114 -22.32851 -20.63834 -20.47317 -17.95837 -17.50262 -17.04179 -16.62062 -16.16553 -15.71608 -15.45292 -15.30355 -15.11560 -14.70580 -14.40624 -14.09166 -13.83091 -13.72532 -13.36711 -13.15542 -13.08421 -12.83411 -12.80363 -12.43911 -12.37768 -12.12743 -12.02065 -11.74815 -11.61341 -11.53136 -11.44538 -11.09885 -10.77667 -10.74548 -10.42279 -9.87940 -9.41366 -9.07065 -7.94839 -6.09590 0.90631 1.00302 1.37025 1.43677 1.49426 2.45458 3.12225 3.25417 3.37123 3.98525 4.10453 4.26562 4.31116 4.37486 4.43339 4.53330 4.55111 4.61427 4.67384 4.72106 4.81377 4.89262 4.92063 4.95145 5.05557 5.09617 5.11422 5.15611 5.28411 5.29390 5.30586 5.36207 5.48906 5.56317 5.57878 5.61978 5.68676 5.74029 5.91391 5.93829 6.08375 6.28065 6.52770 6.57661 6.62427 6.93942 7.55144 9.01380 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.008705 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.657574 B = 3215.735473 C = 4324.104029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 C -0.137 4.137 4 C 0.107 3.893 5 H 0.040 0.960 6 C -0.119 4.119 7 C 0.094 3.906 8 C -0.507 4.507 9 H 0.048 0.952 10 C 0.038 3.962 11 N -0.884 5.884 12 Si 0.925 3.075 13 H -0.272 1.272 14 H -0.292 1.292 15 H -0.285 1.285 16 C 0.000 4.000 17 C -0.128 4.128 18 C -0.135 4.135 19 C -0.156 4.156 20 C -0.137 4.137 21 C -0.132 4.132 22 C -0.128 4.128 23 C 0.077 3.923 24 O -0.388 6.388 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.047 0.953 28 H 0.084 0.916 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.254 0.746 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.036 0.964 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 6.306 -5.839 8.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.107 4.107 3 C -0.194 4.194 4 C 0.049 3.951 5 H 0.058 0.942 6 C -0.156 4.156 7 C 0.094 3.906 8 C -0.545 4.545 9 H 0.066 0.934 10 C -0.163 4.163 11 N -0.521 5.521 12 Si 0.753 3.247 13 H -0.196 1.196 14 H -0.218 1.218 15 H -0.212 1.212 16 C -0.001 4.001 17 C -0.146 4.146 18 C -0.153 4.153 19 C -0.174 4.174 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.166 4.166 23 C 0.001 3.999 24 O -0.308 6.308 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.066 0.934 28 H 0.102 0.898 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.122 0.878 36 H 0.144 0.856 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.053 0.947 42 H 0.054 0.946 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.481 6.412 -5.678 8.692 hybrid contribution 0.026 -1.753 0.691 1.884 sum -1.455 4.659 -4.987 6.978 Atomic orbital electron populations 1.21705 0.94167 1.01456 1.02032 1.21217 0.96903 0.97146 0.95451 1.21743 1.00585 0.95286 1.01805 1.22000 0.92742 0.94709 0.85650 0.94153 1.22115 0.96092 0.99172 0.98239 1.17301 0.88052 0.93901 0.91335 1.21078 1.32510 0.94956 1.05931 0.93389 1.25348 0.94914 0.99884 0.96176 1.70059 1.32646 1.36616 1.12750 0.86023 0.78213 0.82718 0.77764 1.19632 1.21829 1.21157 1.20146 0.96898 0.91157 0.91894 1.21057 0.94586 1.00438 0.98514 1.21223 0.93948 1.00628 0.99468 1.21098 0.99868 0.99681 0.96753 1.21221 0.94411 1.00157 0.99670 1.20916 0.93930 0.99939 1.00205 1.22057 0.95399 0.97307 1.01803 1.22384 0.94879 0.96859 0.85783 1.87703 1.74919 1.54187 1.13976 0.92992 0.91152 0.93380 0.89781 0.93271 0.91324 0.93133 0.92932 0.92682 0.93656 0.87802 0.85645 0.84898 0.85542 0.88060 0.91420 0.94655 0.94557 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 9.05 71.98 0.65 -2.85 16 2 C -0.09 -2.57 2.81 -10.79 -0.03 -2.60 16 3 C -0.14 -3.67 8.70 71.98 0.63 -3.05 16 4 C 0.11 3.92 2.14 30.63 0.07 3.98 16 5 H 0.04 1.65 6.85 -2.38 -0.02 1.63 16 6 C -0.12 -4.69 3.71 30.69 0.11 -4.57 16 7 C 0.09 4.24 0.35 -53.56 -0.02 4.22 16 8 C -0.51 -25.09 5.69 25.60 0.15 -24.95 16 9 H 0.05 2.43 6.88 -2.91 -0.02 2.41 16 10 C 0.04 1.96 5.11 84.65 0.43 2.39 16 11 N -0.88 -46.84 10.36 21.45 0.22 -46.62 16 12 Si 0.92 42.09 29.54 68.60 2.03 44.12 16 13 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 14 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 15 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 16 C 0.00 -0.02 3.34 -19.87 -0.07 -0.08 16 17 C -0.13 -5.55 8.78 22.27 0.20 -5.35 16 18 C -0.13 -5.13 10.05 22.27 0.22 -4.90 16 19 C -0.16 -5.59 10.05 22.27 0.22 -5.36 16 20 C -0.14 -5.19 10.05 22.27 0.22 -4.97 16 21 C -0.13 -5.73 8.88 22.27 0.20 -5.54 16 22 C -0.13 -5.61 3.45 30.69 0.11 -5.51 16 23 C 0.08 3.13 6.62 72.01 0.48 3.61 16 24 O -0.39 -14.97 9.06 -148.98 -1.35 -16.32 16 25 H 0.05 1.44 7.68 -2.39 -0.02 1.42 16 26 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 28 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.05 1.38 6.38 -2.39 -0.02 1.36 16 30 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.05 1.46 7.68 -2.39 -0.02 1.44 16 32 H 0.05 2.03 6.31 -2.39 -0.02 2.01 16 33 H 0.05 2.16 7.91 -2.39 -0.02 2.14 16 34 H 0.25 13.32 8.31 -92.71 -0.77 12.54 16 35 H 0.10 4.51 5.90 -2.91 -0.02 4.49 16 36 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.13 3.82 8.06 -2.91 -0.02 3.79 16 38 H 0.13 4.04 8.06 -2.91 -0.02 4.01 16 39 H 0.10 4.44 7.83 -2.91 -0.02 4.42 16 40 H 0.07 3.33 6.22 -2.39 -0.01 3.31 16 41 H 0.03 1.49 7.04 -2.39 -0.02 1.48 16 42 H 0.04 1.60 7.38 -2.39 -0.02 1.58 16 43 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -54.78 326.30 5.44 -49.35 By element: Atomic # 1 Polarization: 24.02 SS G_CDS: 0.97 Total: 25.00 kcal Atomic # 6 Polarization: -59.10 SS G_CDS: 3.57 Total: -55.53 kcal Atomic # 7 Polarization: -46.84 SS G_CDS: 0.22 Total: -46.62 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.35 Total: -16.32 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -54.78 5.44 -49.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000548964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.994 kcal (2) G-P(sol) polarization free energy of solvation -54.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds