Wall clock time and date at job start Mon Mar 30 2020 02:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47320 * 2 1 4 4 C 1.53001 * 109.47154 * 120.00510 * 2 1 3 5 5 H 1.09001 * 109.47709 * 300.01875 * 4 2 1 6 6 C 1.53099 * 109.47650 * 179.97438 * 4 2 1 7 7 C 1.53178 * 109.15811 * 182.40267 * 6 4 2 8 8 C 1.50700 * 109.54198 * 176.84583 * 7 6 4 9 9 H 1.08003 * 119.99704 * 5.31252 * 8 7 6 10 10 C 1.37877 * 120.00260 * 185.31515 * 8 7 6 11 11 N 1.31516 * 120.00203 * 184.99407 * 10 8 7 12 12 Si 1.86804 * 119.99838 * 4.99157 * 10 8 7 13 13 H 1.48500 * 109.46897 * 85.07526 * 12 10 8 14 14 H 1.48500 * 109.47088 * 205.07409 * 12 10 8 15 15 H 1.48504 * 109.47230 * 325.07664 * 12 10 8 16 16 C 1.50693 * 109.54823 * 297.11478 * 7 6 4 17 17 C 1.38238 * 120.00134 * 239.61510 * 16 7 6 18 18 C 1.38233 * 119.99933 * 179.74618 * 17 16 7 19 19 C 1.38233 * 120.00272 * 0.54376 * 18 17 16 20 20 C 1.38238 * 119.99641 * 359.70525 * 19 18 17 21 21 C 1.38238 * 119.99874 * 59.88358 * 16 7 6 22 22 C 1.53177 * 109.03703 * 56.98396 * 7 6 4 23 23 C 1.53097 * 109.16185 * 303.01583 * 22 7 6 24 24 O 1.42895 * 109.48367 * 60.05729 * 4 2 1 25 25 H 1.08998 * 109.47376 * 60.00124 * 1 2 3 26 26 H 1.08998 * 109.46886 * 299.99693 * 1 2 3 27 27 H 1.09001 * 109.47217 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46987 * 240.00149 * 2 1 3 29 29 H 1.08998 * 109.46891 * 60.00310 * 3 2 1 30 30 H 1.08993 * 109.47478 * 180.02562 * 3 2 1 31 31 H 1.09008 * 109.46759 * 300.00247 * 3 2 1 32 32 H 1.08994 * 109.52238 * 302.30660 * 6 4 2 33 33 H 1.09004 * 109.52189 * 62.50018 * 6 4 2 34 34 H 0.96994 * 119.99880 * 179.97438 * 11 10 8 35 35 H 1.07996 * 119.99833 * 359.97438 * 17 16 7 36 36 H 1.08001 * 120.00023 * 180.26900 * 18 17 16 37 37 H 1.08000 * 120.00225 * 179.73136 * 19 18 17 38 38 H 1.08002 * 119.99880 * 179.97438 * 20 19 18 39 39 H 1.07994 * 120.00033 * 0.02562 * 21 16 7 40 40 H 1.09002 * 109.52533 * 62.91808 * 22 7 6 41 41 H 1.08996 * 109.52579 * 183.10902 * 22 7 6 42 42 H 1.09004 * 109.48277 * 177.59001 * 23 22 7 43 43 H 1.08998 * 109.48046 * 297.61757 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 1.6765 -0.2079 2.1393 6 6 3.5710 -0.7220 1.2490 7 6 4.0736 -1.4975 2.4706 8 6 5.5785 -1.5699 2.4377 9 1 6.1281 -1.0375 1.6755 10 6 6.2536 -2.3157 3.3804 11 7 7.5683 -2.3006 3.4126 12 14 5.3010 -3.3477 4.6121 13 1 4.9792 -4.6661 4.0092 14 1 6.1245 -3.5487 5.8314 15 1 4.0419 -2.6487 4.9748 16 6 3.6281 -0.7991 3.7294 17 6 4.5667 -0.3450 4.6371 18 6 4.1582 0.3003 5.7893 19 6 2.8108 0.4816 6.0394 20 6 1.8721 0.0229 5.1342 21 6 2.2807 -0.6174 3.9792 22 6 3.4917 -2.9140 2.4372 23 6 1.9638 -2.8287 2.3915 24 8 1.5649 -2.0690 1.2487 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 1.6768 1.9562 0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 3.9349 -1.1996 0.3393 33 1 3.9357 0.3043 1.2937 34 1 8.0432 -2.8250 4.0761 35 1 5.6192 -0.4911 4.4442 36 1 4.8916 0.6589 6.4963 37 1 2.4916 0.9819 6.9417 38 1 0.8193 0.1642 5.3297 39 1 1.5473 -0.9764 3.2724 40 1 3.8540 -3.4359 1.5515 41 1 3.7996 -3.4555 3.3316 42 1 1.5454 -3.8330 2.3244 43 1 1.5996 -2.3429 3.2967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000548965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:35 Heat of formation + Delta-G solvation = -3.926924 kcal Electronic energy + Delta-G solvation = -23157.361746 eV Core-core repulsion = 20168.143604 eV Total energy + Delta-G solvation = -2989.218142 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.06805 -39.15174 -36.63810 -36.00745 -33.99136 -31.82540 -31.11502 -30.64649 -28.42790 -27.66808 -25.06337 -24.48322 -23.42456 -22.68156 -20.99065 -20.62128 -18.78894 -17.63058 -17.33992 -16.82542 -16.58308 -16.01916 -15.61762 -15.33043 -15.22891 -14.95004 -14.66145 -14.54691 -14.09716 -13.93299 -13.56528 -13.49959 -12.99338 -12.92707 -12.84476 -12.51245 -12.40997 -12.26401 -12.18708 -11.97319 -11.76413 -11.63311 -11.48047 -11.27091 -11.12009 -10.66867 -10.34436 -9.94043 -9.60408 -9.21215 -8.35514 -6.36534 0.58417 0.67343 1.25052 1.33845 1.39723 2.25882 2.85398 2.99212 3.04080 3.83020 4.00316 4.07905 4.12802 4.16146 4.24833 4.26118 4.28625 4.34584 4.44016 4.47084 4.59009 4.67843 4.77338 4.79161 4.84549 4.88591 4.89869 5.01668 5.06012 5.09181 5.16837 5.20672 5.28670 5.38081 5.42679 5.45123 5.51260 5.55688 5.59572 5.72687 5.82403 6.09728 6.29880 6.32000 6.37437 6.70853 7.27811 8.79905 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.017689 B = 0.008917 C = 0.007603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.509099 B = 3139.477703 C = 3681.777459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.087 4.087 3 C -0.145 4.145 4 C 0.071 3.929 5 H 0.088 0.912 6 C -0.111 4.111 7 C 0.069 3.931 8 C -0.503 4.503 9 H 0.034 0.966 10 C 0.036 3.964 11 N -0.942 5.942 12 Si 0.924 3.076 13 H -0.284 1.284 14 H -0.313 1.313 15 H -0.219 1.219 16 C -0.059 4.059 17 C -0.135 4.135 18 C -0.141 4.141 19 C -0.135 4.135 20 C -0.123 4.123 21 C -0.172 4.172 22 C -0.152 4.152 23 C 0.039 3.961 24 O -0.382 6.382 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.264 0.736 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.151 0.849 39 H 0.158 0.842 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.105 0.895 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.600 5.266 0.489 17.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.105 4.105 3 C -0.202 4.202 4 C 0.015 3.985 5 H 0.105 0.895 6 C -0.149 4.149 7 C 0.068 3.932 8 C -0.541 4.541 9 H 0.053 0.947 10 C -0.162 4.162 11 N -0.582 5.582 12 Si 0.754 3.246 13 H -0.211 1.211 14 H -0.242 1.242 15 H -0.143 1.143 16 C -0.059 4.059 17 C -0.153 4.153 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.140 4.140 21 C -0.188 4.188 22 C -0.189 4.189 23 C -0.037 4.037 24 O -0.301 6.301 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.165 0.835 38 H 0.169 0.831 39 H 0.175 0.825 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.123 0.877 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.559 5.149 0.407 17.345 hybrid contribution 1.409 -0.854 0.634 1.765 sum -15.150 4.295 1.041 15.782 Atomic orbital electron populations 1.21721 0.93295 1.02069 1.02274 1.21106 0.97398 0.95864 0.96166 1.21845 1.00818 0.94702 1.02842 1.22823 0.92354 0.83367 1.00001 0.89464 1.21977 0.95981 0.99841 0.97077 1.17585 0.93548 0.91320 0.90727 1.21029 0.90644 1.29424 1.12981 0.94731 1.25611 0.95030 0.96989 0.98579 1.70034 1.08420 1.42651 1.37106 0.86520 0.80528 0.79518 0.78042 1.21136 1.24213 1.14263 1.20321 0.93244 0.96347 0.96006 1.21573 1.00714 0.98232 0.94734 1.21416 0.97383 0.99882 0.97170 1.21365 0.92262 1.01096 1.00500 1.21451 1.00625 0.98145 0.93812 1.22165 0.95583 1.01661 0.99436 1.22565 0.97283 0.98579 1.00496 1.23153 0.93081 0.97159 0.90279 1.87840 1.74181 1.23945 1.44168 0.91415 0.92224 0.92681 0.91712 0.92065 0.93539 0.90536 0.93347 0.92078 0.92698 0.87333 0.85761 0.83548 0.83136 0.82522 0.92502 0.93730 0.87656 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 9.05 71.98 0.65 -2.23 16 2 C -0.09 -2.26 2.72 -10.79 -0.03 -2.29 16 3 C -0.14 -3.41 8.84 71.98 0.64 -2.77 16 4 C 0.07 2.26 1.79 30.63 0.05 2.31 16 5 H 0.09 2.66 4.27 -2.39 -0.01 2.65 16 6 C -0.11 -4.41 3.71 30.69 0.11 -4.29 16 7 C 0.07 3.10 0.48 -53.56 -0.03 3.07 16 8 C -0.50 -28.08 7.62 25.60 0.19 -27.88 16 9 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 10 C 0.04 2.05 3.96 84.65 0.34 2.39 16 11 N -0.94 -58.49 13.96 21.45 0.30 -58.19 16 12 Si 0.92 45.48 21.89 68.60 1.50 46.98 16 13 H -0.28 -13.68 6.93 99.48 0.69 -12.99 16 14 H -0.31 -15.79 7.11 99.48 0.71 -15.09 16 15 H -0.22 -9.93 4.80 99.48 0.48 -9.45 16 16 C -0.06 -2.44 2.90 -19.87 -0.06 -2.50 16 17 C -0.13 -5.93 6.50 22.27 0.14 -5.78 16 18 C -0.14 -5.05 10.05 22.27 0.22 -4.82 16 19 C -0.13 -3.91 10.05 22.27 0.22 -3.69 16 20 C -0.12 -3.46 10.05 22.27 0.22 -3.24 16 21 C -0.17 -5.75 6.10 22.27 0.14 -5.62 16 22 C -0.15 -6.42 4.20 30.69 0.13 -6.29 16 23 C 0.04 1.30 6.41 72.01 0.46 1.76 16 24 O -0.38 -12.63 9.69 -148.98 -1.44 -14.07 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 26 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.05 1.24 7.68 -2.39 -0.02 1.23 16 28 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.05 1.24 6.49 -2.39 -0.02 1.23 16 31 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.06 2.45 6.57 -2.38 -0.02 2.44 16 34 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 35 H 0.11 5.65 5.11 -2.91 -0.01 5.63 16 36 H 0.12 3.98 8.06 -2.91 -0.02 3.95 16 37 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 38 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.16 4.76 2.70 -2.91 -0.01 4.75 16 40 H 0.06 2.52 8.14 -2.39 -0.02 2.51 16 41 H 0.04 1.98 2.45 -2.39 -0.01 1.97 16 42 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.08 2.54 4.25 -2.39 -0.01 2.53 16 Total: -1.00 -65.37 303.93 4.53 -60.84 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.76 Total: 26.30 kcal Atomic # 6 Polarization: -65.29 SS G_CDS: 3.42 Total: -61.87 kcal Atomic # 7 Polarization: -58.49 SS G_CDS: 0.30 Total: -58.19 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -1.44 Total: -14.07 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.50 Total: 46.98 kcal Total: -65.37 4.53 -60.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000548965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.917 kcal (2) G-P(sol) polarization free energy of solvation -65.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds