Wall clock time and date at job start Mon Mar 30 2020 03:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48506 * 109.46784 * 239.99785 * 3 2 1 5 5 H 1.48501 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47347 * 120.00124 * 3 2 1 7 7 C 1.37878 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47470 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.46958 * 110.99661 * 169.99775 * 11 10 9 13 13 C 1.53058 * 109.36479 * 183.19030 * 12 11 10 14 14 N 1.46961 * 109.36464 * 301.60493 * 13 12 11 15 15 C 1.46893 * 110.99988 * 183.18776 * 14 13 12 16 16 C 1.50702 * 109.47296 * 170.00169 * 15 14 13 17 17 C 1.38234 * 120.00271 * 89.99424 * 16 15 14 18 18 C 1.38230 * 119.99880 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00326 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99485 * 269.97552 * 16 15 14 22 22 C 1.46958 * 110.87981 * 59.31853 * 14 13 12 23 23 C 1.46952 * 111.00361 * 293.80200 * 11 10 9 24 24 H 0.97000 * 119.99427 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47414 * 59.99669 * 9 7 2 26 26 H 1.08999 * 109.47077 * 299.99755 * 9 7 2 27 27 H 1.09003 * 109.46666 * 59.99709 * 10 9 7 28 28 H 1.08999 * 109.47177 * 300.00192 * 10 9 7 29 29 H 1.09007 * 109.48575 * 63.22867 * 12 11 10 30 30 H 1.08998 * 109.49587 * 303.16149 * 12 11 10 31 31 H 1.08993 * 109.49148 * 181.63745 * 13 12 11 32 32 H 1.08995 * 109.48455 * 61.56831 * 13 12 11 33 33 H 1.09003 * 109.47269 * 49.99606 * 15 14 13 34 34 H 1.09009 * 109.47177 * 289.99734 * 15 14 13 35 35 H 1.08001 * 119.99769 * 359.97438 * 17 16 15 36 36 H 1.08000 * 120.00376 * 180.02562 * 18 17 16 37 37 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 38 38 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.00489 * 0.02562 * 21 16 15 40 40 H 1.08993 * 109.49112 * 60.64354 * 22 14 13 41 41 H 1.09001 * 109.48633 * 180.71430 * 22 14 13 42 42 H 1.08999 * 109.48790 * 296.78059 * 23 11 10 43 43 H 1.08999 * 109.49068 * 56.84536 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5105 -4.9343 0.0012 12 6 2.4172 -6.0660 -0.2371 13 6 1.6046 -7.3611 -0.3082 14 7 0.8621 -7.5400 0.9474 15 6 0.1276 -8.8121 0.9479 16 6 -0.4168 -9.0773 2.3279 17 6 -1.6733 -8.6176 2.6755 18 6 -2.1728 -8.8614 3.9411 19 6 -1.4160 -9.5653 4.8591 20 6 -0.1599 -10.0259 4.5113 21 6 0.3403 -9.7806 3.2461 22 6 -0.0446 -6.4082 1.1855 23 6 0.7681 -5.1132 1.2567 24 1 -0.4849 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6045 -0.8894 29 1 3.1374 -6.1329 0.5784 30 1 2.9461 -5.9165 -1.1784 31 1 2.2780 -8.2053 -0.4558 32 1 0.9032 -7.3050 -1.1406 33 1 0.8005 -9.6203 0.6612 34 1 -0.6967 -8.7561 0.2368 35 1 -2.2647 -8.0681 1.9581 36 1 -3.1546 -8.5026 4.2126 37 1 -1.8044 -9.7519 5.8495 38 1 0.4315 -10.5755 5.2286 39 1 1.3220 -10.1397 2.9747 40 1 -0.7647 -6.3413 0.3701 41 1 -0.5734 -6.5578 2.1269 42 1 1.4695 -5.1692 2.0891 43 1 0.0947 -4.2690 1.4044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019513092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:58 Heat of formation + Delta-G solvation = 29.820017 kcal Electronic energy + Delta-G solvation = -20784.174452 eV Core-core repulsion = 17828.712439 eV Total energy + Delta-G solvation = -2955.462014 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -39.76923 -38.55221 -35.64509 -33.10634 -31.79351 -31.08515 -30.52981 -29.65070 -27.02626 -24.65135 -23.52708 -23.13444 -22.51913 -21.07698 -20.28719 -19.37620 -16.88994 -16.55048 -15.81009 -15.48512 -15.38689 -14.64757 -14.57280 -14.44734 -14.23872 -13.81583 -13.75087 -13.49542 -12.88359 -12.69446 -12.55502 -12.14829 -12.00394 -11.65291 -11.41062 -11.10295 -11.05170 -10.98874 -10.89759 -10.72723 -10.51042 -10.39030 -9.79918 -9.32108 -9.11020 -8.99986 -8.88550 -8.30994 -8.26488 -7.67567 -5.97608 -3.99876 1.22597 1.30897 3.34866 3.39052 3.41531 3.58426 4.14824 4.40473 4.58184 4.64512 4.74223 4.89901 5.00105 5.09991 5.18377 5.34746 5.37686 5.38754 5.40004 5.53093 5.58185 5.65961 5.70409 5.83099 5.89242 5.93649 5.97976 6.15829 6.22276 6.34427 6.35246 6.40362 6.45380 6.52902 6.54358 6.88658 6.99561 7.06049 7.12618 7.54526 7.61089 7.82506 7.92369 8.10647 8.45962 9.07120 9.63517 11.13769 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.003349 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.509652 B = 8359.392298 C = 8964.057009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.056 3.944 13 C 0.060 3.940 14 N -0.535 5.535 15 C 0.093 3.907 16 C -0.074 4.074 17 C -0.113 4.113 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.100 4.100 22 C 0.056 3.944 23 C 0.058 3.942 24 H 0.261 0.739 25 H 0.023 0.977 26 H 0.016 0.984 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.042 0.958 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.034 0.966 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.604 -21.480 5.442 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.063 4.063 11 N -0.265 5.265 12 C -0.072 4.072 13 C -0.068 4.068 14 N -0.260 5.260 15 C -0.035 4.035 16 C -0.074 4.074 17 C -0.131 4.131 18 C -0.139 4.139 19 C -0.142 4.142 20 C -0.141 4.141 21 C -0.118 4.118 22 C -0.072 4.072 23 C -0.070 4.070 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.745 -21.348 5.416 22.094 hybrid contribution 0.465 1.009 0.069 1.113 sum -1.280 -20.339 5.485 21.104 Atomic orbital electron populations 1.69964 1.06015 1.26651 1.50642 1.24991 0.94835 0.99152 0.95323 0.86657 0.79575 0.83156 0.78588 1.20249 1.21284 1.20286 1.21164 0.92951 0.91100 1.50902 0.92865 1.19081 0.93970 0.90106 0.97689 1.22315 0.96721 0.88324 0.98934 1.62262 1.27675 1.02529 1.34077 1.22107 0.94210 0.90268 1.00660 1.22159 0.96906 0.97651 0.90075 1.62195 1.27536 1.01458 1.34763 1.21025 0.96865 0.92786 0.92810 1.19768 0.94075 0.97622 0.95959 1.21114 0.95652 0.99542 0.96826 1.21127 0.99970 0.99043 0.93770 1.21134 0.94969 0.98728 0.99356 1.21137 0.96017 1.00446 0.96541 1.21005 0.99201 0.98384 0.93251 1.22281 0.94185 0.89855 1.00836 1.22145 0.97481 0.96667 0.90698 0.92969 0.95826 0.96528 0.96194 0.92147 0.94721 0.90683 0.90867 0.94043 0.90141 0.93961 0.86200 0.86145 0.86342 0.86266 0.86123 0.94110 0.90406 0.94791 0.89244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.76 4.91 -27.88 -0.14 0.63 16 10 C 0.06 1.38 4.90 -3.83 -0.02 1.37 16 11 N -0.54 -10.18 4.71 -234.46 -1.10 -11.29 16 12 C 0.06 0.87 5.61 -3.76 -0.02 0.85 16 13 C 0.06 0.79 5.61 -3.76 -0.02 0.76 16 14 N -0.53 -7.15 4.70 -235.90 -1.11 -8.26 16 15 C 0.09 1.02 5.12 -4.98 -0.03 0.99 16 16 C -0.07 -0.82 4.89 -104.62 -0.51 -1.33 16 17 C -0.11 -1.22 7.92 -39.59 -0.31 -1.53 16 18 C -0.12 -1.21 10.05 -39.59 -0.40 -1.60 16 19 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 20 C -0.12 -1.19 10.05 -39.58 -0.40 -1.58 16 21 C -0.10 -1.04 9.70 -39.58 -0.38 -1.43 16 22 C 0.06 0.84 5.25 -3.76 -0.02 0.82 16 23 C 0.06 1.05 5.41 -3.77 -0.02 1.03 16 24 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 25 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.02 0.46 6.49 -51.93 -0.34 0.12 16 27 H 0.02 0.44 8.12 -51.93 -0.42 0.01 16 28 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 31 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.77 7.97 -51.93 -0.41 0.36 16 34 H 0.04 0.46 8.06 -51.92 -0.42 0.04 16 35 H 0.12 1.22 7.99 -52.49 -0.42 0.80 16 36 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.10 5.95 -51.93 -0.31 0.80 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.09 1.77 6.34 -51.93 -0.33 1.44 16 LS Contribution 341.66 15.07 5.15 5.15 Total: -1.00 -30.88 341.66 -11.68 -42.55 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.25 Total: -2.30 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -3.08 Total: -16.33 kcal Atomic # 7 Polarization: -44.43 SS G_CDS: -1.48 Total: -45.91 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -30.88 -11.68 -42.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019513092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.372 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds