Wall clock time and date at job start Mon Mar 30 2020 03:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48506 * 109.46784 * 239.99785 * 3 2 1 5 5 H 1.48501 * 109.47256 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47347 * 120.00124 * 3 2 1 7 7 C 1.37878 * 119.99516 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00079 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47470 * 179.97438 * 9 7 2 11 11 N 1.46896 * 109.47228 * 179.97438 * 10 9 7 12 12 C 1.46958 * 110.99661 * 169.99775 * 11 10 9 13 13 C 1.53058 * 109.36479 * 183.19030 * 12 11 10 14 14 N 1.46961 * 109.36464 * 301.60493 * 13 12 11 15 15 C 1.46893 * 110.99988 * 183.18776 * 14 13 12 16 16 C 1.50702 * 109.47296 * 170.00169 * 15 14 13 17 17 C 1.38234 * 120.00271 * 89.99424 * 16 15 14 18 18 C 1.38230 * 119.99880 * 179.97438 * 17 16 15 19 19 C 1.38235 * 120.00326 * 359.97438 * 18 17 16 20 20 C 1.38234 * 119.99814 * 359.97438 * 19 18 17 21 21 C 1.38234 * 119.99485 * 269.97552 * 16 15 14 22 22 C 1.46958 * 110.87981 * 59.31853 * 14 13 12 23 23 C 1.46952 * 111.00361 * 293.80200 * 11 10 9 24 24 H 0.97000 * 119.99427 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.47414 * 59.99669 * 9 7 2 26 26 H 1.08999 * 109.47077 * 299.99755 * 9 7 2 27 27 H 1.09003 * 109.46666 * 59.99709 * 10 9 7 28 28 H 1.08999 * 109.47177 * 300.00192 * 10 9 7 29 29 H 1.09007 * 109.48575 * 63.22867 * 12 11 10 30 30 H 1.08998 * 109.49587 * 303.16149 * 12 11 10 31 31 H 1.08993 * 109.49148 * 181.63745 * 13 12 11 32 32 H 1.08995 * 109.48455 * 61.56831 * 13 12 11 33 33 H 1.09003 * 109.47269 * 49.99606 * 15 14 13 34 34 H 1.09009 * 109.47177 * 289.99734 * 15 14 13 35 35 H 1.08001 * 119.99769 * 359.97438 * 17 16 15 36 36 H 1.08000 * 120.00376 * 180.02562 * 18 17 16 37 37 H 1.08000 * 120.00616 * 179.72578 * 19 18 17 38 38 H 1.08001 * 120.00299 * 179.97438 * 20 19 18 39 39 H 1.07997 * 120.00489 * 0.02562 * 21 16 15 40 40 H 1.08993 * 109.49112 * 60.64354 * 22 14 13 41 41 H 1.09001 * 109.48633 * 180.71430 * 22 14 13 42 42 H 1.08999 * 109.48790 * 296.78059 * 23 11 10 43 43 H 1.08999 * 109.49068 * 56.84536 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5105 -4.9343 0.0012 12 6 2.4172 -6.0660 -0.2371 13 6 1.6046 -7.3611 -0.3082 14 7 0.8621 -7.5400 0.9474 15 6 0.1276 -8.8121 0.9479 16 6 -0.4168 -9.0773 2.3279 17 6 -1.6733 -8.6176 2.6755 18 6 -2.1728 -8.8614 3.9411 19 6 -1.4160 -9.5653 4.8591 20 6 -0.1599 -10.0259 4.5113 21 6 0.3403 -9.7806 3.2461 22 6 -0.0446 -6.4082 1.1855 23 6 0.7681 -5.1132 1.2567 24 1 -0.4849 0.8401 0.0004 25 1 0.6245 -2.5571 -0.8897 26 1 0.6240 -2.5567 0.8903 27 1 2.8718 -3.6044 0.8905 28 1 2.8718 -3.6045 -0.8894 29 1 3.1374 -6.1329 0.5784 30 1 2.9461 -5.9165 -1.1784 31 1 2.2780 -8.2053 -0.4558 32 1 0.9032 -7.3050 -1.1406 33 1 0.8005 -9.6203 0.6612 34 1 -0.6967 -8.7561 0.2368 35 1 -2.2647 -8.0681 1.9581 36 1 -3.1546 -8.5026 4.2126 37 1 -1.8044 -9.7519 5.8495 38 1 0.4315 -10.5755 5.2286 39 1 1.3220 -10.1397 2.9747 40 1 -0.7647 -6.3413 0.3701 41 1 -0.5734 -6.5578 2.1269 42 1 1.4695 -5.1692 2.0891 43 1 0.0947 -4.2690 1.4044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019513092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:55 Heat of formation + Delta-G solvation = 10.853667 kcal Electronic energy + Delta-G solvation = -20784.996895 eV Core-core repulsion = 17828.712439 eV Total energy + Delta-G solvation = -2956.284456 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.73973 -39.63934 -37.00119 -35.09828 -32.98930 -32.00559 -31.59965 -31.32373 -28.38593 -26.21953 -24.88984 -24.47551 -23.32944 -22.11898 -21.86950 -20.70200 -18.61622 -17.65192 -17.13352 -16.59724 -16.41648 -16.21897 -16.01903 -15.55561 -15.49359 -15.19212 -15.08724 -14.34537 -14.23291 -14.13628 -13.72981 -13.42824 -13.27547 -13.03269 -12.92296 -12.73436 -12.48055 -12.25514 -12.19124 -12.02317 -11.85796 -11.77863 -11.56459 -11.27663 -11.17093 -10.53838 -9.76517 -9.68471 -9.35167 -9.17169 -8.20253 -6.31881 0.45608 0.55238 1.39809 1.43321 1.51217 2.40095 2.73517 3.04972 3.12811 3.19739 3.81032 3.91632 3.99223 4.10736 4.19058 4.21253 4.26776 4.34374 4.42782 4.46170 4.52408 4.59864 4.64109 4.69134 4.74455 4.81973 4.83852 4.92169 4.98285 5.04258 5.10842 5.15520 5.20786 5.43972 5.60164 5.64402 5.66627 5.72903 5.76217 5.99584 5.99791 6.12682 6.18587 6.30099 6.32455 6.84765 7.37103 8.91732 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026471 B = 0.003349 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.509652 B = 8359.392298 C = 8964.057009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.038 3.962 10 C 0.080 3.920 11 N -0.551 5.551 12 C 0.055 3.945 13 C 0.065 3.935 14 N -0.539 5.539 15 C 0.096 3.904 16 C -0.089 4.089 17 C -0.128 4.128 18 C -0.132 4.132 19 C -0.129 4.129 20 C -0.129 4.129 21 C -0.110 4.110 22 C 0.070 3.930 23 C 0.062 3.938 24 H 0.264 0.736 25 H -0.009 1.009 26 H -0.008 1.008 27 H 0.017 0.983 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.038 0.962 33 H 0.100 0.900 34 H 0.043 0.957 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.033 0.967 41 H 0.084 0.916 42 H 0.027 0.973 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.349 -22.640 5.793 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.001 3.999 10 C -0.047 4.047 11 N -0.276 5.276 12 C -0.073 4.073 13 C -0.063 4.063 14 N -0.264 5.264 15 C -0.030 4.030 16 C -0.089 4.089 17 C -0.147 4.147 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.147 4.147 21 C -0.128 4.128 22 C -0.058 4.058 23 C -0.066 4.066 24 H 0.073 0.927 25 H 0.010 0.990 26 H 0.011 0.989 27 H 0.035 0.965 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.062 0.938 35 H 0.137 0.863 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.052 0.948 41 H 0.102 0.898 42 H 0.045 0.955 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.483 -22.539 5.765 23.270 hybrid contribution 0.031 1.309 -0.005 1.309 sum -0.452 -21.231 5.760 22.003 Atomic orbital electron populations 1.70109 1.07837 1.27851 1.51318 1.25977 0.95773 1.03356 0.94568 0.85473 0.78253 0.77929 0.79214 1.19057 1.20749 1.19185 1.21601 0.93528 0.92294 1.51097 0.92179 1.18896 0.94162 0.91951 0.94908 1.21958 0.95363 0.88397 0.98997 1.62194 1.28362 1.02562 1.34491 1.22234 0.94040 0.89910 1.01115 1.22175 0.97051 0.97314 0.89753 1.62188 1.27481 1.01742 1.35027 1.21064 0.97132 0.91820 0.93024 1.19864 0.94399 0.98403 0.96261 1.21251 0.95976 1.00045 0.97408 1.21390 1.00803 0.99134 0.93649 1.21461 0.94964 0.98094 1.00199 1.21456 0.96291 1.00257 0.96719 1.21228 0.99696 0.98347 0.93546 1.22059 0.93683 0.89127 1.00939 1.22056 0.97015 0.97396 0.90181 0.92740 0.99028 0.98939 0.96495 0.91522 0.94801 0.89522 0.87653 0.94388 0.88154 0.93840 0.86314 0.84802 0.84276 0.84198 0.85018 0.94843 0.89826 0.95462 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 2 C 0.00 0.08 5.46 84.65 0.46 0.54 16 3 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 7 C -0.55 -31.94 9.11 25.60 0.23 -31.71 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 9 C 0.04 2.11 4.91 29.85 0.15 2.25 16 10 C 0.08 3.55 4.90 86.30 0.42 3.98 16 11 N -0.55 -20.99 4.71 -895.70 -4.22 -25.21 16 12 C 0.05 1.62 5.61 86.31 0.48 2.11 16 13 C 0.06 1.55 5.61 86.31 0.48 2.04 16 14 N -0.54 -13.63 4.70 -900.26 -4.23 -17.86 16 15 C 0.10 1.94 5.12 85.56 0.44 2.38 16 16 C -0.09 -1.86 4.89 -19.87 -0.10 -1.96 16 17 C -0.13 -2.70 7.92 22.27 0.18 -2.52 16 18 C -0.13 -2.49 10.05 22.27 0.22 -2.27 16 19 C -0.13 -2.22 10.05 22.27 0.22 -2.00 16 20 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 21 C -0.11 -2.09 9.70 22.27 0.22 -1.88 16 22 C 0.07 2.09 5.25 86.31 0.45 2.55 16 23 C 0.06 2.29 5.41 86.31 0.47 2.76 16 24 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 25 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 26 H -0.01 -0.45 6.49 -2.39 -0.02 -0.47 16 27 H 0.02 0.75 8.12 -2.39 -0.02 0.73 16 28 H 0.07 2.84 8.03 -2.39 -0.02 2.82 16 29 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.09 2.35 8.07 -2.39 -0.02 2.33 16 31 H 0.11 1.91 8.07 -2.39 -0.02 1.89 16 32 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.10 1.63 7.97 -2.39 -0.02 1.61 16 34 H 0.04 0.87 8.06 -2.38 -0.02 0.86 16 35 H 0.12 2.41 7.99 -2.91 -0.02 2.39 16 36 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 39 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.08 2.39 5.95 -2.39 -0.01 2.38 16 42 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 2.52 6.34 -2.39 -0.02 2.51 16 Total: -1.00 -67.18 341.66 -0.63 -67.81 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.95 Total: 11.60 kcal Atomic # 6 Polarization: -30.29 SS G_CDS: 4.56 Total: -25.74 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -8.16 Total: -100.56 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -67.18 -0.63 -67.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019513092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.662 kcal (2) G-P(sol) polarization free energy of solvation -67.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds