Wall clock time and date at job start Mon Mar 30 2020 03:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47236 * 300.00557 * 3 2 1 6 6 H 1.48500 * 109.46924 * 60.00320 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.38286 * 119.92142 * 269.72559 * 12 11 10 14 14 C 1.38108 * 120.06868 * 179.72432 * 13 12 11 15 15 C 1.38904 * 119.92733 * 0.54850 * 14 13 12 16 16 N 1.39681 * 120.07777 * 179.70234 * 15 14 13 17 17 C 1.46844 * 111.00055 * 124.23116 * 16 15 14 18 18 C 1.53028 * 109.52387 * 174.16215 * 17 16 15 19 19 C 1.53122 * 109.27975 * 59.18060 * 18 17 16 20 20 C 1.53120 * 109.16016 * 302.34589 * 19 18 17 21 21 C 1.46849 * 110.99406 * 0.02562 * 16 15 14 22 22 C 1.38913 * 119.85166 * 359.72744 * 15 14 13 23 23 C 1.38106 * 119.92415 * 359.97438 * 22 15 14 24 24 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.07999 * 119.96544 * 359.97438 * 13 12 11 31 31 H 1.08005 * 120.03586 * 180.27157 * 14 13 12 32 32 H 1.09001 * 109.46105 * 294.18149 * 17 16 15 33 33 H 1.08999 * 109.46239 * 54.14578 * 17 16 15 34 34 H 1.08995 * 109.50756 * 299.24102 * 18 17 16 35 35 H 1.09001 * 109.50816 * 179.11692 * 18 17 16 36 36 H 1.08999 * 109.52896 * 182.44190 * 19 18 17 37 37 H 1.09000 * 109.52188 * 62.24834 * 19 18 17 38 38 H 1.09006 * 109.49983 * 297.71405 * 20 19 18 39 39 H 1.08999 * 109.50685 * 177.59084 * 20 19 18 40 40 H 1.08996 * 109.46286 * 305.84955 * 21 16 15 41 41 H 1.08994 * 109.46629 * 65.82422 * 21 16 15 42 42 H 1.08000 * 120.03949 * 180.02562 * 22 15 14 43 43 H 1.07999 * 119.96140 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5148 -6.0259 -0.0018 13 6 2.9726 -6.5413 -1.2006 14 6 3.9020 -7.5629 -1.2047 15 6 4.3684 -8.0803 -0.0030 16 7 5.3037 -9.1178 -0.0035 17 6 6.4981 -8.7499 0.7675 18 6 7.4339 -9.9565 0.8676 19 6 7.8315 -10.4061 -0.5411 20 6 6.5670 -10.7370 -1.3387 21 6 5.6562 -9.5076 -1.3747 22 6 3.9021 -7.5641 1.1994 23 6 2.9774 -6.5384 1.1964 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8406 -3.5486 0.7807 28 1 0.8801 -4.9817 0.8886 29 1 0.8807 -4.9812 -0.8913 30 1 2.6059 -6.1418 -2.1346 31 1 4.2624 -7.9620 -2.1414 32 1 7.0145 -7.9301 0.2681 33 1 6.2017 -8.4362 1.7685 34 1 6.9228 -10.7721 1.3791 35 1 8.3275 -9.6788 1.4265 36 1 8.4633 -11.2919 -0.4762 37 1 8.3767 -9.6044 -1.0391 38 1 6.0422 -11.5649 -0.8617 39 1 6.8410 -11.0168 -2.3559 40 1 4.7485 -9.7444 -1.9297 41 1 6.1766 -8.6844 -1.8640 42 1 4.2630 -7.9639 2.1356 43 1 2.6142 -6.1369 2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020200090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:43 Heat of formation + Delta-G solvation = 19.037348 kcal Electronic energy + Delta-G solvation = -20345.956646 eV Core-core repulsion = 17390.027060 eV Total energy + Delta-G solvation = -2955.929585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.38661 -38.15588 -35.39500 -33.75166 -32.31362 -31.71028 -30.39000 -29.63378 -26.75574 -24.95827 -24.05584 -23.24897 -21.70715 -21.37852 -20.69059 -19.77692 -17.58462 -16.49722 -15.72701 -15.28381 -15.03559 -14.92185 -14.54751 -14.33039 -14.14842 -13.99619 -13.52098 -13.47955 -13.29335 -13.05421 -12.46791 -12.40118 -12.09430 -11.59147 -11.54325 -11.35047 -11.13723 -11.01770 -10.91644 -10.75059 -10.70726 -10.55378 -10.51074 -9.93943 -9.53667 -9.16561 -8.74562 -8.48032 -7.69831 -7.25744 -6.02730 -4.04559 1.53176 1.61019 3.31426 3.38536 3.44020 3.54838 3.99029 4.44508 4.46040 4.52091 4.61900 4.86377 5.01650 5.05390 5.08987 5.20306 5.23798 5.30173 5.33185 5.37269 5.47013 5.54479 5.54972 5.60867 5.66412 5.72104 5.77912 5.78858 5.92156 6.00231 6.04041 6.25196 6.26943 6.37425 6.54251 6.87893 6.96920 6.99806 7.25458 7.37847 7.42672 7.79493 8.13086 8.40587 8.61817 9.05139 9.60350 11.08427 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032267 B = 0.002889 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.564142 B = 9690.007767 C = 9980.280721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.512 4.512 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.684 5.684 11 C 0.096 3.904 12 C -0.089 4.089 13 C -0.074 4.074 14 C -0.172 4.172 15 C 0.098 3.902 16 N -0.488 5.488 17 C 0.057 3.943 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.118 4.118 21 C 0.050 3.950 22 C -0.141 4.141 23 C -0.092 4.092 24 H 0.261 0.739 25 H 0.028 0.972 26 H -0.013 1.013 27 H 0.329 0.671 28 H 0.027 0.973 29 H 0.071 0.929 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.119 0.881 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.785 -22.134 -0.025 25.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.551 4.551 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.315 5.315 11 C -0.033 4.033 12 C -0.090 4.090 13 C -0.093 4.093 14 C -0.192 4.192 15 C 0.001 3.999 16 N -0.204 5.204 17 C -0.069 4.069 18 C -0.156 4.156 19 C -0.161 4.161 20 C -0.156 4.156 21 C -0.077 4.077 22 C -0.161 4.161 23 C -0.111 4.111 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.004 0.996 27 H 0.146 0.854 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.060 0.940 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.137 0.863 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 12.554 -22.445 -0.484 25.722 hybrid contribution 0.274 1.535 0.532 1.648 sum 12.828 -20.910 0.048 24.531 Atomic orbital electron populations 1.69974 1.06080 1.26679 1.51058 1.24999 0.94886 0.99387 0.95377 0.86424 0.80078 0.83317 0.77500 1.19647 1.20988 1.21085 1.21225 0.93563 0.90202 1.50124 0.91918 1.19588 0.90627 0.87353 0.95822 1.60725 1.21043 1.00635 1.49067 1.20852 0.93352 0.88681 1.00455 1.19969 0.98973 0.97266 0.92822 1.20913 0.95651 0.94704 0.98023 1.21236 1.01948 0.99199 0.96848 1.18835 0.96108 0.91046 0.93866 1.59093 1.11663 1.35101 1.14580 1.22230 0.89379 0.96754 0.98505 1.21626 0.98638 0.98132 0.97245 1.21606 0.97389 1.01213 0.95896 1.21623 0.95768 0.97844 1.00364 1.22257 0.99519 0.97293 0.88608 1.20655 1.00167 0.98894 0.96360 1.20938 0.96511 0.95851 0.97815 0.92965 0.95357 0.99565 0.85448 0.95532 0.91050 0.85908 0.86030 0.93952 0.90045 0.91004 0.91231 0.91694 0.92106 0.91035 0.91265 0.89993 0.93743 0.86268 0.86178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.51 -14.76 9.32 -34.44 -0.32 -15.08 16 8 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 9 C 0.19 5.14 5.44 -4.98 -0.03 5.11 16 10 N -0.68 -15.13 6.48 -116.34 -0.75 -15.88 16 11 C 0.10 1.77 5.81 -4.98 -0.03 1.74 16 12 C -0.09 -1.43 5.40 -104.59 -0.56 -1.99 16 13 C -0.07 -1.10 9.69 -39.61 -0.38 -1.49 16 14 C -0.17 -2.28 8.82 -39.38 -0.35 -2.63 16 15 C 0.10 1.28 5.64 -83.79 -0.47 0.80 16 16 N -0.49 -5.37 4.70 -171.15 -0.80 -6.17 16 17 C 0.06 0.54 5.26 -3.84 -0.02 0.52 16 18 C -0.12 -0.89 6.09 -26.65 -0.16 -1.05 16 19 C -0.12 -0.86 6.00 -26.61 -0.16 -1.02 16 20 C -0.12 -0.88 6.09 -26.65 -0.16 -1.04 16 21 C 0.05 0.47 4.15 -3.83 -0.02 0.45 16 22 C -0.14 -1.85 9.16 -39.38 -0.36 -2.21 16 23 C -0.09 -1.33 9.69 -39.61 -0.38 -1.71 16 24 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H -0.01 -0.38 8.14 -51.93 -0.42 -0.80 16 27 H 0.33 7.04 8.72 -39.29 -0.34 6.70 16 28 H 0.03 0.48 8.08 -51.93 -0.42 0.06 16 29 H 0.07 1.32 8.08 -51.93 -0.42 0.90 16 30 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.12 1.38 5.81 -52.48 -0.30 1.07 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.08 0.77 6.70 -51.93 -0.35 0.42 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.76 6.98 -51.93 -0.36 0.39 16 41 H 0.04 0.43 7.74 -51.93 -0.40 0.02 16 42 H 0.12 1.36 7.15 -52.49 -0.38 0.99 16 43 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -30.75 342.11 -11.36 -42.11 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.17 Total: 2.39 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -3.51 Total: -18.11 kcal Atomic # 7 Polarization: -47.61 SS G_CDS: -0.82 Total: -48.43 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.75 -11.36 -42.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.148 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds