Wall clock time and date at job start Mon Mar 30 2020 03:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00040 * 2 1 4 4 H 1.48495 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47236 * 300.00557 * 3 2 1 6 6 H 1.48500 * 109.46924 * 60.00320 * 3 2 1 7 7 C 1.37880 * 119.99924 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99703 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99722 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46800 * 180.02562 * 9 7 2 11 11 C 1.46899 * 111.00029 * 180.02562 * 10 9 7 12 12 C 1.50703 * 109.47107 * 179.97438 * 11 10 9 13 13 C 1.38286 * 119.92142 * 269.72559 * 12 11 10 14 14 C 1.38108 * 120.06868 * 179.72432 * 13 12 11 15 15 C 1.38904 * 119.92733 * 0.54850 * 14 13 12 16 16 N 1.39681 * 120.07777 * 179.70234 * 15 14 13 17 17 C 1.46844 * 111.00055 * 124.23116 * 16 15 14 18 18 C 1.53028 * 109.52387 * 174.16215 * 17 16 15 19 19 C 1.53122 * 109.27975 * 59.18060 * 18 17 16 20 20 C 1.53120 * 109.16016 * 302.34589 * 19 18 17 21 21 C 1.46849 * 110.99406 * 0.02562 * 16 15 14 22 22 C 1.38913 * 119.85166 * 359.72744 * 15 14 13 23 23 C 1.38106 * 119.92415 * 359.97438 * 22 15 14 24 24 H 0.96998 * 120.00185 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47455 * 60.00159 * 9 7 2 26 26 H 1.09003 * 109.47449 * 299.99392 * 9 7 2 27 27 H 1.00902 * 111.00190 * 56.03702 * 10 9 7 28 28 H 1.09002 * 109.47043 * 299.99792 * 11 10 9 29 29 H 1.09001 * 109.47354 * 59.99854 * 11 10 9 30 30 H 1.07999 * 119.96544 * 359.97438 * 13 12 11 31 31 H 1.08005 * 120.03586 * 180.27157 * 14 13 12 32 32 H 1.09001 * 109.46105 * 294.18149 * 17 16 15 33 33 H 1.08999 * 109.46239 * 54.14578 * 17 16 15 34 34 H 1.08995 * 109.50756 * 299.24102 * 18 17 16 35 35 H 1.09001 * 109.50816 * 179.11692 * 18 17 16 36 36 H 1.08999 * 109.52896 * 182.44190 * 19 18 17 37 37 H 1.09000 * 109.52188 * 62.24834 * 19 18 17 38 38 H 1.09006 * 109.49983 * 297.71405 * 20 19 18 39 39 H 1.08999 * 109.50685 * 177.59084 * 20 19 18 40 40 H 1.08996 * 109.46286 * 305.84955 * 21 16 15 41 41 H 1.08994 * 109.46629 * 65.82422 * 21 16 15 42 42 H 1.08000 * 120.03949 * 180.02562 * 22 15 14 43 43 H 1.07999 * 119.96140 * 179.97438 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2056 -3.6157 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 6 2.5148 -6.0259 -0.0018 13 6 2.9726 -6.5413 -1.2006 14 6 3.9020 -7.5629 -1.2047 15 6 4.3684 -8.0803 -0.0030 16 7 5.3037 -9.1178 -0.0035 17 6 6.4981 -8.7499 0.7675 18 6 7.4339 -9.9565 0.8676 19 6 7.8315 -10.4061 -0.5411 20 6 6.5670 -10.7370 -1.3387 21 6 5.6562 -9.5076 -1.3747 22 6 3.9021 -7.5641 1.1994 23 6 2.9774 -6.5384 1.1964 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5567 -0.8902 26 1 0.6247 -2.5571 0.8897 27 1 2.8406 -3.5486 0.7807 28 1 0.8801 -4.9817 0.8886 29 1 0.8807 -4.9812 -0.8913 30 1 2.6059 -6.1418 -2.1346 31 1 4.2624 -7.9620 -2.1414 32 1 7.0145 -7.9301 0.2681 33 1 6.2017 -8.4362 1.7685 34 1 6.9228 -10.7721 1.3791 35 1 8.3275 -9.6788 1.4265 36 1 8.4633 -11.2919 -0.4762 37 1 8.3767 -9.6044 -1.0391 38 1 6.0422 -11.5649 -0.8617 39 1 6.8410 -11.0168 -2.3559 40 1 4.7485 -9.7444 -1.9297 41 1 6.1766 -8.6844 -1.8640 42 1 4.2630 -7.9639 2.1356 43 1 2.6142 -6.1369 2.1309 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020200090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:42 Heat of formation + Delta-G solvation = 0.539442 kcal Electronic energy + Delta-G solvation = -20346.758775 eV Core-core repulsion = 17390.027060 eV Total energy + Delta-G solvation = -2956.731715 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.31418 -39.16538 -36.98762 -35.04624 -34.11235 -32.55442 -31.31458 -31.00667 -28.49946 -26.20046 -24.90347 -24.51275 -23.36776 -22.61490 -21.73069 -20.54931 -18.76178 -18.35105 -17.00282 -16.64277 -16.26089 -16.07504 -15.88610 -15.30483 -15.23577 -14.99530 -14.87250 -14.59759 -14.38603 -14.14756 -14.00720 -13.49842 -13.27884 -13.17067 -12.93831 -12.72718 -12.65686 -12.27950 -12.17925 -11.94435 -11.87845 -11.69080 -11.37929 -11.29059 -11.27892 -10.68627 -10.52080 -9.84354 -9.16273 -8.68970 -8.23649 -6.35378 0.41005 0.50865 1.40479 1.41345 1.55506 2.39163 2.62910 2.93980 3.09211 3.73820 3.78980 3.84443 3.97635 4.02132 4.05733 4.08940 4.21866 4.36993 4.42159 4.50325 4.52262 4.62631 4.63449 4.73270 4.77679 4.86048 4.90323 4.94905 5.06015 5.10903 5.16817 5.21572 5.22591 5.25498 5.36644 5.42370 5.46460 5.59535 5.79613 5.83550 5.99993 6.09488 6.36154 6.42665 6.68443 6.86426 7.35593 8.87941 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.032267 B = 0.002889 C = 0.002805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.564142 B = 9690.007767 C = 9980.280721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.207 3.793 10 N -0.683 5.683 11 C 0.101 3.899 12 C -0.111 4.111 13 C -0.083 4.083 14 C -0.174 4.174 15 C 0.103 3.897 16 N -0.492 5.492 17 C 0.054 3.946 18 C -0.115 4.115 19 C -0.123 4.123 20 C -0.114 4.114 21 C 0.046 3.954 22 C -0.143 4.143 23 C -0.095 4.095 24 H 0.266 0.734 25 H 0.001 0.999 26 H -0.037 1.037 27 H 0.334 0.666 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.122 0.878 31 H 0.141 0.859 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.042 0.958 42 H 0.138 0.862 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.003 -23.056 0.097 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.573 4.573 8 H 0.081 0.919 9 C 0.080 3.920 10 N -0.313 5.313 11 C -0.028 4.028 12 C -0.112 4.112 13 C -0.102 4.102 14 C -0.195 4.195 15 C 0.005 3.995 16 N -0.207 5.207 17 C -0.071 4.071 18 C -0.152 4.152 19 C -0.161 4.161 20 C -0.152 4.152 21 C -0.081 4.081 22 C -0.163 4.163 23 C -0.114 4.114 24 H 0.075 0.925 25 H 0.019 0.981 26 H -0.020 1.020 27 H 0.151 0.849 28 H 0.045 0.955 29 H 0.083 0.917 30 H 0.140 0.860 31 H 0.158 0.842 32 H 0.053 0.947 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.061 0.939 42 H 0.156 0.844 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 14.791 -23.402 -0.361 27.687 hybrid contribution -0.394 1.685 0.491 1.799 sum 14.397 -21.717 0.129 26.056 Atomic orbital electron populations 1.70096 1.07810 1.28019 1.51513 1.25976 0.95825 1.03446 0.94525 0.85253 0.78869 0.78139 0.77839 1.18711 1.20293 1.20140 1.21553 0.93754 0.91395 1.50636 0.91880 1.19241 0.90645 0.88826 0.93332 1.60604 1.20353 1.01032 1.49321 1.20803 0.93996 0.87851 1.00115 1.19747 0.99869 0.97490 0.94077 1.20991 0.96190 0.95394 0.97624 1.21419 1.01389 0.98658 0.98006 1.19065 0.96006 0.90774 0.93642 1.59133 1.12012 1.33845 1.15749 1.22317 0.89056 0.97621 0.98124 1.21621 0.98609 0.97078 0.97917 1.21623 0.97304 1.01825 0.95315 1.21617 0.95499 0.96646 1.01438 1.22366 1.00004 0.98117 0.87618 1.20850 0.99632 0.98409 0.97392 1.21037 0.96670 0.96173 0.97487 0.92540 0.98069 1.01981 0.84915 0.95504 0.91676 0.86048 0.84160 0.94688 0.89996 0.91057 0.89850 0.90222 0.92194 0.91257 0.89752 0.90024 0.93936 0.84394 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.25 13.29 21.45 0.28 -56.96 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.97 44.89 29.54 68.60 2.03 46.92 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 7 C -0.54 -31.31 9.32 25.60 0.24 -31.07 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 9 C 0.21 11.48 5.44 85.55 0.47 11.94 16 10 N -0.68 -30.99 6.48 -521.98 -3.38 -34.38 16 11 C 0.10 3.85 5.81 85.56 0.50 4.35 16 12 C -0.11 -3.57 5.40 -19.84 -0.11 -3.67 16 13 C -0.08 -2.47 9.69 22.25 0.22 -2.25 16 14 C -0.17 -4.45 8.82 22.40 0.20 -4.25 16 15 C 0.10 2.52 5.64 38.21 0.22 2.74 16 16 N -0.49 -9.88 4.70 -695.41 -3.27 -13.15 16 17 C 0.05 0.93 5.26 86.32 0.45 1.38 16 18 C -0.11 -1.43 6.09 30.64 0.19 -1.25 16 19 C -0.12 -1.38 6.00 30.67 0.18 -1.20 16 20 C -0.11 -1.41 6.09 30.65 0.19 -1.22 16 21 C 0.05 0.76 4.15 86.33 0.36 1.12 16 22 C -0.14 -3.57 9.16 22.40 0.21 -3.36 16 23 C -0.09 -2.69 9.69 22.25 0.22 -2.47 16 24 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 25 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 26 H -0.04 -2.21 8.14 -2.39 -0.02 -2.23 16 27 H 0.33 14.54 8.72 -89.69 -0.78 13.76 16 28 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 29 H 0.06 2.51 8.08 -2.39 -0.02 2.49 16 30 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.14 2.97 5.81 -2.91 -0.02 2.96 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 1.38 6.70 -2.39 -0.02 1.37 16 34 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 39 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.08 1.35 6.98 -2.39 -0.02 1.34 16 41 H 0.04 0.73 7.74 -2.39 -0.02 0.72 16 42 H 0.14 2.88 7.15 -2.91 -0.02 2.86 16 43 H 0.13 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -65.82 342.11 -0.17 -65.99 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.20 Total: 20.31 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.98 Total: -28.73 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -6.36 Total: -104.49 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -65.82 -0.17 -65.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.530 kcal (2) G-P(sol) polarization free energy of solvation -65.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds