Wall clock time and date at job start Mon Mar 30 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00322 * 2 1 4 4 H 1.48504 * 109.47051 * 264.99890 * 3 2 1 5 5 H 1.48499 * 109.47393 * 24.99738 * 3 2 1 6 6 H 1.48496 * 109.47455 * 145.00163 * 3 2 1 7 7 C 1.37885 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99896 * 353.22735 * 7 2 1 9 9 C 1.50703 * 119.99605 * 173.22086 * 7 2 1 10 10 H 1.08991 * 109.47038 * 0.32671 * 9 7 2 11 11 O 1.42893 * 109.47332 * 240.32178 * 9 7 2 12 12 C 1.42904 * 114.00144 * 90.00120 * 11 9 7 13 13 C 1.53000 * 109.47154 * 180.02562 * 12 11 9 14 14 C 1.52992 * 109.47011 * 295.00042 * 13 12 11 15 15 C 1.53005 * 109.47276 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46886 * 59.99845 * 15 14 13 17 17 C 1.53000 * 109.47076 * 300.00097 * 16 15 14 18 18 C 1.52997 * 109.46839 * 175.00079 * 13 12 11 19 19 C 1.50704 * 109.46453 * 120.32007 * 9 7 2 20 20 C 1.38230 * 120.00319 * 265.47704 * 19 9 7 21 21 C 1.38233 * 120.00096 * 179.97438 * 20 19 9 22 22 C 1.38239 * 119.99765 * 359.97438 * 21 20 19 23 23 C 1.38227 * 120.00265 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99974 * 0.06833 * 23 22 21 25 25 H 0.97003 * 119.99385 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46767 * 300.00353 * 12 11 9 27 27 H 1.09001 * 109.46488 * 60.00054 * 12 11 9 28 28 H 1.09001 * 109.47208 * 55.00228 * 13 12 11 29 29 H 1.09001 * 109.47287 * 300.00138 * 14 13 12 30 30 H 1.09005 * 109.47407 * 60.00458 * 14 13 12 31 31 H 1.09001 * 109.46895 * 300.00157 * 15 14 13 32 32 H 1.09004 * 109.47142 * 180.02562 * 15 14 13 33 33 H 1.08999 * 109.46722 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.47098 * 60.00436 * 16 15 14 35 35 H 1.08995 * 109.47100 * 299.99894 * 17 16 15 36 36 H 1.09004 * 109.46568 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.47141 * 300.00048 * 18 13 12 38 38 H 1.09001 * 109.47098 * 60.00083 * 18 13 12 39 39 H 1.07999 * 120.00043 * 359.97438 * 20 19 9 40 40 H 1.08003 * 120.00088 * 180.02562 * 21 20 19 41 41 H 1.08006 * 119.99511 * 179.72167 * 22 21 20 42 42 H 1.07998 * 120.00446 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00268 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6024 1.9852 -1.3948 5 1 1.3979 2.6808 0.5916 6 1 3.4899 1.4729 0.8030 7 6 2.0045 -1.1942 0.0005 8 1 1.4701 -2.1261 0.1112 9 6 3.5036 -1.1988 -0.1535 10 1 3.8625 -0.1739 -0.2460 11 8 3.8598 -1.9357 -1.3248 12 6 3.9353 -1.1417 -2.5106 13 6 4.3213 -2.0297 -3.6953 14 6 5.7344 -2.5763 -3.4836 15 6 6.1208 -3.4638 -4.6686 16 6 6.0803 -2.6400 -5.9572 17 6 4.6670 -2.0933 -6.1688 18 6 4.2806 -1.2063 -4.9842 19 6 4.1307 -1.8435 1.0557 20 6 4.5626 -1.0611 2.1103 21 6 5.1373 -1.6525 3.2197 22 6 5.2797 -3.0265 3.2747 23 6 4.8469 -3.8089 2.2206 24 6 4.2730 -3.2175 1.1108 25 1 -0.4849 0.8401 -0.0004 26 1 2.9657 -0.6820 -2.7022 27 1 4.6869 -0.3633 -2.3793 28 1 3.6184 -2.8593 -3.7717 29 1 6.4373 -1.7467 -3.4071 30 1 5.7634 -3.1630 -2.5653 31 1 5.4180 -4.2934 -4.7455 32 1 7.1275 -3.8536 -4.5176 33 1 6.3551 -3.2723 -6.8014 34 1 6.7831 -1.8104 -5.8803 35 1 3.9643 -2.9229 -6.2457 36 1 4.6382 -1.5067 -7.0871 37 1 3.2738 -0.8168 -5.1349 38 1 4.9835 -0.3767 -4.9077 39 1 4.4509 0.0122 2.0675 40 1 5.4743 -1.0413 4.0439 41 1 5.7328 -3.4882 4.1396 42 1 4.9585 -4.8823 2.2634 43 1 3.9344 -3.8288 0.2873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055022250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:22 Heat of formation + Delta-G solvation = -54.880966 kcal Electronic energy + Delta-G solvation = -21431.292561 eV Core-core repulsion = 18439.864886 eV Total energy + Delta-G solvation = -2991.427675 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -38.82761 -38.37723 -36.36889 -32.92914 -31.73310 -30.67010 -30.46369 -30.15867 -27.11871 -25.09589 -22.80870 -22.36081 -21.87415 -20.83825 -20.11783 -19.47309 -17.17591 -16.28473 -15.65889 -15.27633 -14.90876 -14.42548 -14.34063 -14.00072 -13.92737 -13.66064 -13.06659 -12.97761 -12.76039 -12.52209 -12.24341 -12.05761 -11.97272 -11.65100 -11.33799 -11.11877 -11.01397 -10.96136 -10.75586 -10.52425 -10.36177 -10.13134 -9.87468 -9.81984 -9.74914 -9.37274 -8.77515 -8.45825 -8.23264 -7.77028 -6.26391 -4.27825 2.08219 2.12324 3.12695 3.19902 3.22703 4.21917 4.42518 4.61532 4.85887 4.93349 5.00657 5.15402 5.37521 5.45563 5.51468 5.56977 5.65703 5.66568 5.68953 5.69867 5.77109 5.79240 6.01508 6.04627 6.12488 6.15557 6.21779 6.27786 6.29360 6.32231 6.36042 6.40631 6.52180 6.61410 6.69685 6.72363 6.76616 6.81630 7.12500 7.23115 7.42168 7.47351 7.72511 8.21804 8.47956 8.87558 9.35642 10.86122 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.006494 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.796420 B = 4310.316654 C = 5799.266520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.079 3.921 3 Si 0.864 3.136 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.081 0.919 9 C 0.212 3.788 10 H 0.031 0.969 11 O -0.391 6.391 12 C 0.076 3.924 13 C -0.083 4.083 14 C -0.109 4.109 15 C -0.119 4.119 16 C -0.119 4.119 17 C -0.116 4.116 18 C -0.115 4.115 19 C -0.032 4.032 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.147 4.147 23 C -0.127 4.127 24 C -0.102 4.102 25 H 0.267 0.733 26 H 0.049 0.951 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.823 -3.213 -5.764 13.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.125 4.125 3 Si 0.691 3.309 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.557 4.557 8 H 0.099 0.901 9 C 0.157 3.843 10 H 0.048 0.952 11 O -0.311 6.311 12 C -0.002 4.002 13 C -0.101 4.101 14 C -0.147 4.147 15 C -0.157 4.157 16 C -0.156 4.156 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.033 4.033 20 C -0.145 4.145 21 C -0.142 4.142 22 C -0.165 4.165 23 C -0.145 4.145 24 C -0.120 4.120 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.132 0.868 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.682 -3.289 -5.758 13.433 hybrid contribution 0.119 1.308 0.152 1.323 sum 11.801 -1.981 -5.606 13.214 Atomic orbital electron populations 1.69899 1.06208 1.27292 1.48526 1.25096 0.94782 0.98772 0.93833 0.87078 0.80472 0.84128 0.79199 1.19713 1.20809 1.18752 1.21276 0.89001 0.95256 1.50128 0.90075 1.19031 0.94431 0.90044 0.80838 0.95157 1.87778 1.90499 1.36938 1.15870 1.22222 0.99073 0.92955 0.85915 1.21109 0.97353 0.98543 0.93109 1.21513 0.95982 0.99116 0.98062 1.21551 1.00845 0.98360 0.94921 1.21540 0.97115 0.99454 0.97513 1.21493 0.96820 0.99404 0.97678 1.21517 1.01534 0.98040 0.94124 1.20201 0.92755 0.93904 0.96393 1.20954 0.99683 0.99701 0.94171 1.20929 1.00688 0.94838 0.97768 1.20886 1.02938 0.93954 0.98732 1.21052 1.00091 0.98993 0.94369 1.20955 0.98597 0.94753 0.97671 0.92249 0.93320 0.95442 0.90482 0.92684 0.91002 0.92107 0.92523 0.92598 0.92300 0.91986 0.92391 0.91791 0.92211 0.86831 0.87068 0.87258 0.87080 0.85956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.20 13.96 55.43 0.77 -25.43 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.86 20.63 26.97 -169.99 -4.59 16.04 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.26 -5.94 5.85 56.52 0.33 -5.61 16 7 C -0.52 -14.49 9.17 -34.44 -0.32 -14.80 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 9 C 0.21 5.11 2.29 -29.03 -0.07 5.04 16 10 H 0.03 0.73 4.30 -51.93 -0.22 0.51 16 11 O -0.39 -8.78 8.64 -35.23 -0.30 -9.09 16 12 C 0.08 1.49 5.12 37.16 0.19 1.68 16 13 C -0.08 -1.31 2.43 -90.63 -0.22 -1.53 16 14 C -0.11 -1.57 5.10 -26.73 -0.14 -1.70 16 15 C -0.12 -1.41 5.92 -26.73 -0.16 -1.57 16 16 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 17 C -0.12 -1.32 5.92 -26.76 -0.16 -1.48 16 18 C -0.11 -1.55 5.20 -26.76 -0.14 -1.69 16 19 C -0.03 -0.71 4.99 -104.62 -0.52 -1.24 16 20 C -0.13 -2.60 9.68 -39.59 -0.38 -2.98 16 21 C -0.12 -2.17 10.05 -39.58 -0.40 -2.57 16 22 C -0.15 -2.42 10.05 -39.59 -0.40 -2.82 16 23 C -0.13 -2.21 10.05 -39.59 -0.40 -2.61 16 24 C -0.10 -2.07 9.35 -39.58 -0.37 -2.44 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.03 0.52 8.09 -51.93 -0.42 0.10 16 28 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.14 7.82 -51.93 -0.41 0.73 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.11 2.30 7.14 -52.49 -0.37 1.93 16 40 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 41 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.12 2.49 7.62 -52.48 -0.40 2.09 16 LS Contribution 341.41 15.07 5.14 5.14 Total: -1.00 -29.20 341.41 -10.07 -39.27 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.37 Total: 4.07 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: -3.73 Total: -30.01 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.77 Total: -25.43 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.30 Total: -9.09 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.59 Total: 16.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.20 -10.07 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055022250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.611 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds