Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86792 * 120.00322 * 2 1 4 4 H 1.48504 * 109.47051 * 264.99890 * 3 2 1 5 5 H 1.48499 * 109.47393 * 24.99738 * 3 2 1 6 6 H 1.48496 * 109.47455 * 145.00163 * 3 2 1 7 7 C 1.37885 * 119.99527 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99896 * 353.22735 * 7 2 1 9 9 C 1.50703 * 119.99605 * 173.22086 * 7 2 1 10 10 H 1.08991 * 109.47038 * 0.32671 * 9 7 2 11 11 O 1.42893 * 109.47332 * 240.32178 * 9 7 2 12 12 C 1.42904 * 114.00144 * 90.00120 * 11 9 7 13 13 C 1.53000 * 109.47154 * 180.02562 * 12 11 9 14 14 C 1.52992 * 109.47011 * 295.00042 * 13 12 11 15 15 C 1.53005 * 109.47276 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.46886 * 59.99845 * 15 14 13 17 17 C 1.53000 * 109.47076 * 300.00097 * 16 15 14 18 18 C 1.52997 * 109.46839 * 175.00079 * 13 12 11 19 19 C 1.50704 * 109.46453 * 120.32007 * 9 7 2 20 20 C 1.38230 * 120.00319 * 265.47704 * 19 9 7 21 21 C 1.38233 * 120.00096 * 179.97438 * 20 19 9 22 22 C 1.38239 * 119.99765 * 359.97438 * 21 20 19 23 23 C 1.38227 * 120.00265 * 359.97438 * 22 21 20 24 24 C 1.38235 * 119.99974 * 0.06833 * 23 22 21 25 25 H 0.97003 * 119.99385 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46767 * 300.00353 * 12 11 9 27 27 H 1.09001 * 109.46488 * 60.00054 * 12 11 9 28 28 H 1.09001 * 109.47208 * 55.00228 * 13 12 11 29 29 H 1.09001 * 109.47287 * 300.00138 * 14 13 12 30 30 H 1.09005 * 109.47407 * 60.00458 * 14 13 12 31 31 H 1.09001 * 109.46895 * 300.00157 * 15 14 13 32 32 H 1.09004 * 109.47142 * 180.02562 * 15 14 13 33 33 H 1.08999 * 109.46722 * 180.02562 * 16 15 14 34 34 H 1.09001 * 109.47098 * 60.00436 * 16 15 14 35 35 H 1.08995 * 109.47100 * 299.99894 * 17 16 15 36 36 H 1.09004 * 109.46568 * 180.02562 * 17 16 15 37 37 H 1.08999 * 109.47141 * 300.00048 * 18 13 12 38 38 H 1.09001 * 109.47098 * 60.00083 * 18 13 12 39 39 H 1.07999 * 120.00043 * 359.97438 * 20 19 9 40 40 H 1.08003 * 120.00088 * 180.02562 * 21 20 19 41 41 H 1.08006 * 119.99511 * 179.72167 * 22 21 20 42 42 H 1.07998 * 120.00446 * 179.97438 * 23 22 21 43 43 H 1.08007 * 120.00268 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.6024 1.9852 -1.3948 5 1 1.3979 2.6808 0.5916 6 1 3.4899 1.4729 0.8030 7 6 2.0045 -1.1942 0.0005 8 1 1.4701 -2.1261 0.1112 9 6 3.5036 -1.1988 -0.1535 10 1 3.8625 -0.1739 -0.2460 11 8 3.8598 -1.9357 -1.3248 12 6 3.9353 -1.1417 -2.5106 13 6 4.3213 -2.0297 -3.6953 14 6 5.7344 -2.5763 -3.4836 15 6 6.1208 -3.4638 -4.6686 16 6 6.0803 -2.6400 -5.9572 17 6 4.6670 -2.0933 -6.1688 18 6 4.2806 -1.2063 -4.9842 19 6 4.1307 -1.8435 1.0557 20 6 4.5626 -1.0611 2.1103 21 6 5.1373 -1.6525 3.2197 22 6 5.2797 -3.0265 3.2747 23 6 4.8469 -3.8089 2.2206 24 6 4.2730 -3.2175 1.1108 25 1 -0.4849 0.8401 -0.0004 26 1 2.9657 -0.6820 -2.7022 27 1 4.6869 -0.3633 -2.3793 28 1 3.6184 -2.8593 -3.7717 29 1 6.4373 -1.7467 -3.4071 30 1 5.7634 -3.1630 -2.5653 31 1 5.4180 -4.2934 -4.7455 32 1 7.1275 -3.8536 -4.5176 33 1 6.3551 -3.2723 -6.8014 34 1 6.7831 -1.8104 -5.8803 35 1 3.9643 -2.9229 -6.2457 36 1 4.6382 -1.5067 -7.0871 37 1 3.2738 -0.8168 -5.1349 38 1 4.9835 -0.3767 -4.9077 39 1 4.4509 0.0122 2.0675 40 1 5.4743 -1.0413 4.0439 41 1 5.7328 -3.4882 4.1396 42 1 4.9585 -4.8823 2.2634 43 1 3.9344 -3.8288 0.2873 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055022250.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -69.453933 kcal Electronic energy + Delta-G solvation = -21431.924493 eV Core-core repulsion = 18439.864886 eV Total energy + Delta-G solvation = -2992.059606 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.32964 -39.63203 -37.96556 -34.91794 -33.28661 -32.01585 -31.63246 -31.55271 -29.00894 -26.54487 -24.57322 -23.44143 -23.30841 -22.06280 -21.75155 -20.61115 -19.28862 -17.75688 -17.45926 -16.59195 -16.43902 -16.05498 -15.78631 -15.28388 -15.02556 -14.91293 -14.83887 -14.57414 -14.20819 -14.11901 -13.80992 -13.38272 -13.09766 -13.03082 -12.87916 -12.81988 -12.52669 -12.15618 -11.99263 -11.96218 -11.81957 -11.75506 -11.34322 -11.26984 -10.99952 -10.86729 -10.83981 -10.21714 -9.69785 -9.39912 -8.44234 -6.51808 0.60444 0.64558 1.21128 1.23455 1.32959 2.18699 2.73706 3.08271 3.14708 3.76672 3.88124 3.93409 4.10890 4.22279 4.23816 4.29954 4.38165 4.39078 4.43824 4.49171 4.59352 4.63480 4.65674 4.70620 4.82962 4.84640 4.87003 4.91877 5.09218 5.17954 5.22513 5.26729 5.27786 5.30924 5.33438 5.36880 5.41861 5.53551 5.60627 5.68822 5.73362 5.90487 6.08002 6.26415 6.51047 6.69809 7.17613 8.72652 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.006494 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.796420 B = 4310.316654 C = 5799.266520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.026 3.974 3 Si 0.924 3.076 4 H -0.259 1.259 5 H -0.275 1.275 6 H -0.241 1.241 7 C -0.528 4.528 8 H 0.028 0.972 9 C 0.220 3.780 10 H 0.031 0.969 11 O -0.399 6.399 12 C 0.069 3.931 13 C -0.078 4.078 14 C -0.105 4.105 15 C -0.116 4.116 16 C -0.115 4.115 17 C -0.114 4.114 18 C -0.113 4.113 19 C -0.069 4.069 20 C -0.146 4.146 21 C -0.119 4.119 22 C -0.134 4.134 23 C -0.123 4.123 24 C -0.122 4.122 25 H 0.271 0.729 26 H 0.020 0.980 27 H 0.039 0.961 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.143 0.857 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.069 -2.995 -5.398 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.173 4.173 3 Si 0.747 3.253 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.165 1.165 7 C -0.566 4.566 8 H 0.047 0.953 9 C 0.163 3.837 10 H 0.049 0.951 11 O -0.318 6.318 12 C -0.008 4.008 13 C -0.096 4.096 14 C -0.142 4.142 15 C -0.153 4.153 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.150 4.150 19 C -0.069 4.069 20 C -0.164 4.164 21 C -0.137 4.137 22 C -0.152 4.152 23 C -0.141 4.141 24 C -0.140 4.140 25 H 0.080 0.920 26 H 0.039 0.961 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.128 0.872 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.161 0.839 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 14.945 -3.088 -5.398 16.188 hybrid contribution -0.899 1.098 0.094 1.422 sum 14.046 -1.990 -5.304 15.146 Atomic orbital electron populations 1.70045 1.08111 1.28508 1.50447 1.25934 0.95545 1.02673 0.93197 0.86104 0.79918 0.79079 0.80214 1.18414 1.19989 1.16520 1.21387 0.91431 0.93410 1.50336 0.95331 1.18846 0.91998 0.90584 0.82241 0.95142 1.87763 1.90170 1.37486 1.16424 1.22460 0.97968 0.93993 0.86330 1.21097 0.98082 0.97730 0.92719 1.21454 0.94791 0.99469 0.98529 1.21531 1.01541 0.97876 0.94363 1.21536 0.96592 0.99782 0.97345 1.21494 0.97333 0.99107 0.97174 1.21521 1.01463 0.98386 0.93648 1.20187 0.95319 0.95044 0.96365 1.21094 1.00790 0.99611 0.94912 1.21355 0.99029 0.95912 0.97404 1.21412 1.00973 0.93530 0.99303 1.21414 0.98511 1.00875 0.93294 1.20972 1.00038 0.94142 0.98867 0.91983 0.96134 0.94317 0.92176 0.92091 0.93146 0.92483 0.90935 0.90528 0.91592 0.92297 0.90439 0.92671 0.91334 0.87165 0.83447 0.82833 0.83889 0.87625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.96 21.45 0.30 -57.94 16 2 C 0.03 1.53 5.47 84.66 0.46 2.00 16 3 Si 0.92 43.28 26.97 68.60 1.85 45.13 16 4 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.24 -10.40 5.85 99.48 0.58 -9.82 16 7 C -0.53 -31.41 9.17 25.60 0.23 -31.18 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 9 C 0.22 11.03 2.29 29.10 0.07 11.10 16 10 H 0.03 1.51 4.30 -2.39 -0.01 1.50 16 11 O -0.40 -18.94 8.64 -148.98 -1.29 -20.22 16 12 C 0.07 2.85 5.12 71.98 0.37 3.22 16 13 C -0.08 -2.53 2.43 -10.80 -0.03 -2.56 16 14 C -0.10 -2.98 5.10 30.59 0.16 -2.82 16 15 C -0.12 -2.54 5.92 30.59 0.18 -2.36 16 16 C -0.12 -2.15 5.92 30.59 0.18 -1.97 16 17 C -0.11 -2.36 5.92 30.58 0.18 -2.18 16 18 C -0.11 -2.98 5.20 30.58 0.16 -2.82 16 19 C -0.07 -3.13 4.99 -19.86 -0.10 -3.23 16 20 C -0.15 -5.85 9.68 22.27 0.22 -5.63 16 21 C -0.12 -3.78 10.05 22.27 0.22 -3.56 16 22 C -0.13 -3.88 10.05 22.27 0.22 -3.66 16 23 C -0.12 -4.01 10.05 22.27 0.22 -3.79 16 24 C -0.12 -5.06 9.35 22.27 0.21 -4.85 16 25 H 0.27 15.68 8.31 -92.71 -0.77 14.90 16 26 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.04 1.49 8.09 -2.39 -0.02 1.47 16 28 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.63 7.82 -2.38 -0.02 1.61 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.11 4.37 7.14 -2.91 -0.02 4.35 16 40 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 41 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 42 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 43 H 0.11 4.58 7.62 -2.91 -0.02 4.56 16 Total: -1.00 -68.40 341.41 4.65 -63.75 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: 0.83 Total: 23.57 kcal Atomic # 6 Polarization: -57.25 SS G_CDS: 2.96 Total: -54.29 kcal Atomic # 7 Polarization: -58.24 SS G_CDS: 0.30 Total: -57.94 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.29 Total: -20.22 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.85 Total: 45.13 kcal Total: -68.40 4.65 -63.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055022250.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.708 kcal (2) G-P(sol) polarization free energy of solvation -68.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds