Wall clock time and date at job start Mon Mar 30 2020 01:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86806 * 120.00158 * 2 1 4 4 H 1.48492 * 109.46892 * 269.25630 * 3 2 1 5 5 H 1.48497 * 109.46944 * 29.26139 * 3 2 1 6 6 H 1.48504 * 109.46757 * 149.25717 * 3 2 1 7 7 C 1.38813 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99808 * 340.61038 * 7 2 1 9 9 N 1.36941 * 120.00086 * 160.59936 * 7 2 1 10 10 C 1.47079 * 120.88112 * 331.66336 * 9 7 2 11 11 C 1.53236 * 108.52322 * 231.20331 * 10 9 7 12 12 N 1.46901 * 109.33815 * 306.17209 * 11 10 9 13 13 C 1.38540 * 111.00023 * 187.25241 * 12 11 10 14 14 N 1.33021 * 120.56253 * 298.14523 * 13 12 11 15 15 C 1.31759 * 120.62088 * 180.02562 * 14 13 12 16 16 N 1.31759 * 121.89696 * 359.97438 * 15 14 13 17 17 C 1.32689 * 121.01357 * 0.02562 * 16 15 14 18 18 C 1.37934 * 119.05476 * 0.02562 * 17 16 15 19 19 C 1.51045 * 109.97231 * 179.97438 * 18 17 16 20 20 C 1.54424 * 105.12522 * 342.98835 * 19 18 17 21 21 C 1.51508 * 131.10758 * 179.81091 * 17 16 15 22 22 C 1.46899 * 111.26867 * 63.10033 * 12 11 10 23 23 C 1.47075 * 120.87914 * 151.67942 * 9 7 2 24 24 H 0.97003 * 119.99964 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.62829 * 111.49267 * 10 9 7 26 26 H 1.09006 * 109.62908 * 350.91425 * 10 9 7 27 27 H 1.09003 * 109.49515 * 186.21027 * 11 10 9 28 28 H 1.08996 * 109.51431 * 66.14226 * 11 10 9 29 29 H 1.07993 * 119.05186 * 179.97438 * 15 14 13 30 30 H 1.09010 * 110.31435 * 224.07520 * 19 18 17 31 31 H 1.09000 * 110.31158 * 101.90334 * 19 18 17 32 32 H 1.09003 * 110.82688 * 144.27172 * 20 19 18 33 33 H 1.08999 * 110.82605 * 267.62745 * 20 19 18 34 34 H 1.09001 * 110.25517 * 78.13750 * 21 17 16 35 35 H 1.09006 * 110.49497 * 315.89395 * 21 17 16 36 36 H 1.08999 * 109.49435 * 56.85754 * 22 12 11 37 37 H 1.09004 * 109.49075 * 176.93841 * 22 12 11 38 38 H 1.08999 * 109.62763 * 248.50501 * 23 9 7 39 39 H 1.08995 * 109.62888 * 9.09055 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.5134 2.0373 -1.3999 5 1 1.4400 2.6571 0.6843 6 1 3.5399 1.4446 0.7157 7 6 2.0102 -1.2022 0.0005 8 1 1.5161 -2.1108 0.3115 9 7 3.3213 -1.2360 -0.3934 10 6 3.8444 -0.2593 -1.3606 11 6 4.5660 -1.0196 -2.4784 12 7 5.5740 -1.9107 -1.8885 13 6 6.3570 -2.4940 -2.8713 14 7 5.8110 -3.2873 -3.7890 15 6 6.5547 -3.8431 -4.7239 16 7 7.8548 -3.6405 -4.7912 17 6 8.4719 -2.8620 -3.9116 18 6 7.7324 -2.2603 -2.9148 19 6 8.6340 -1.4270 -2.0350 20 6 10.0641 -1.9255 -2.3365 21 6 9.9310 -2.4784 -3.7720 22 6 4.9494 -2.9323 -1.0375 23 6 4.2436 -2.2503 0.1393 24 1 -0.4850 0.8401 -0.0004 25 1 4.5450 0.4106 -0.8621 26 1 3.0201 0.3161 -1.7822 27 1 5.0543 -0.3090 -3.1453 28 1 3.8438 -1.6101 -3.0421 29 1 6.0850 -4.4831 -5.4560 30 1 8.3910 -1.5873 -0.9844 31 1 8.5398 -0.3712 -2.2890 32 1 10.7768 -1.1015 -2.3031 33 1 10.3538 -2.7145 -1.6425 34 1 10.1902 -1.7091 -4.4994 35 1 10.5694 -3.3525 -3.9011 36 1 4.2216 -3.4963 -1.6208 37 1 5.7159 -3.6088 -0.6593 38 1 4.9825 -1.7718 0.7820 39 1 3.6832 -2.9913 0.7094 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071397991.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:10 Heat of formation + Delta-G solvation = 91.625337 kcal Electronic energy + Delta-G solvation = -21492.891745 eV Core-core repulsion = 18436.569468 eV Total energy + Delta-G solvation = -3056.322277 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.49433 -38.51457 -36.92343 -35.06728 -32.57646 -31.36456 -30.54501 -29.89766 -28.21741 -26.74058 -23.73044 -23.32706 -22.98676 -22.06013 -20.81473 -19.55863 -17.87269 -17.27664 -16.43366 -16.10046 -15.20830 -14.86575 -14.59499 -14.30900 -14.21704 -14.03516 -13.86904 -13.45457 -13.07824 -12.80747 -12.51216 -12.35129 -12.03491 -11.90353 -11.46848 -11.41908 -11.03616 -10.88787 -10.78789 -10.51388 -10.23199 -10.15090 -9.94415 -9.51039 -9.27023 -9.04950 -8.68452 -8.43050 -6.99098 -5.96022 -3.33992 0.91325 0.99134 3.30545 3.47403 3.51228 3.63954 3.68757 3.71677 4.14268 4.46860 4.51710 4.57853 4.74775 4.81457 4.90487 5.20638 5.28817 5.34128 5.46276 5.51184 5.59453 5.63522 5.65875 5.72526 5.79886 5.93115 5.96483 5.99353 6.01425 6.08352 6.27846 6.28458 6.53037 6.58920 6.81536 6.99520 7.15161 7.39920 7.92928 8.10220 8.31674 8.90300 9.69370 10.08054 11.19996 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.029605 B = 0.005018 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.568360 B = 5578.841139 C = 5932.187495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.024 3.976 3 Si 0.884 3.116 4 H -0.288 1.288 5 H -0.303 1.303 6 H -0.270 1.270 7 C -0.261 4.261 8 H 0.086 0.914 9 N -0.607 5.607 10 C 0.131 3.869 11 C 0.051 3.949 12 N -0.485 5.485 13 C 0.361 3.639 14 N -0.542 5.542 15 C 0.302 3.698 16 N -0.525 5.525 17 C 0.158 3.842 18 C -0.173 4.173 19 C -0.066 4.066 20 C -0.120 4.120 21 C -0.070 4.070 22 C 0.049 3.951 23 C 0.154 3.846 24 H 0.263 0.737 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.062 0.938 28 H 0.054 0.946 29 H 0.195 0.805 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.040 -4.267 -6.435 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.714 3.286 4 H -0.215 1.215 5 H -0.231 1.231 6 H -0.195 1.195 7 C -0.389 4.389 8 H 0.104 0.896 9 N -0.331 5.331 10 C 0.005 3.995 11 C -0.078 4.078 12 N -0.209 5.209 13 C 0.125 3.875 14 N -0.260 5.260 15 C 0.012 3.988 16 N -0.240 5.240 17 C 0.012 3.988 18 C -0.179 4.179 19 C -0.104 4.104 20 C -0.158 4.158 21 C -0.108 4.108 22 C -0.079 4.079 23 C 0.027 3.973 24 H 0.073 0.927 25 H 0.052 0.948 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.211 0.789 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.050 0.950 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.686 -4.483 -6.763 21.292 hybrid contribution 0.070 0.941 -0.104 0.949 sum 19.755 -3.542 -6.867 21.213 Atomic orbital electron populations 1.69823 1.05729 1.26608 1.52989 1.25297 0.95235 0.97607 0.99318 0.86956 0.79888 0.84503 0.77249 1.21523 1.23066 1.19480 1.18919 0.84138 0.94708 1.41116 0.89637 1.44385 1.07801 1.34081 1.46812 1.21482 0.96469 0.92025 0.89502 1.22698 0.92298 0.95035 0.97722 1.60170 1.25026 1.19064 1.16670 1.20068 0.90310 0.88293 0.88847 1.68733 1.41600 1.10566 1.05061 1.24694 0.85440 0.94582 0.94058 1.67691 1.11942 1.17246 1.27092 1.22223 0.97430 0.90042 0.89076 1.21827 0.94022 1.01754 1.00274 1.20787 0.91258 0.98620 0.99732 1.22388 0.97030 1.01253 0.95167 1.21089 0.89489 1.01836 0.98355 1.22691 0.97114 0.92484 0.95643 1.21021 0.92004 0.91942 0.92304 0.92712 0.94808 0.90218 0.91919 0.92787 0.78896 0.89452 0.89688 0.89714 0.90566 0.88877 0.89360 0.93057 0.91768 0.94964 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.88 13.97 55.49 0.78 -27.11 16 2 C 0.02 0.71 5.25 -17.43 -0.09 0.62 16 3 Si 0.88 22.32 24.31 -169.99 -4.13 18.18 16 4 H -0.29 -6.97 6.50 56.52 0.37 -6.60 16 5 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 6 H -0.27 -6.71 6.76 56.52 0.38 -6.33 16 7 C -0.26 -7.30 10.07 -15.06 -0.15 -7.45 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.13 16 9 N -0.61 -14.53 2.79 -172.02 -0.48 -15.01 16 10 C 0.13 2.91 4.35 -3.60 -0.02 2.89 16 11 C 0.05 0.97 5.41 -3.70 -0.02 0.95 16 12 N -0.49 -8.50 4.58 -172.73 -0.79 -9.30 16 13 C 0.36 5.85 5.28 -154.77 -0.82 5.03 16 14 N -0.54 -8.84 9.98 -13.83 -0.14 -8.98 16 15 C 0.30 4.17 12.28 -92.21 -1.13 3.04 16 16 N -0.53 -7.23 10.44 -10.65 -0.11 -7.34 16 17 C 0.16 2.00 7.37 -81.94 -0.60 1.39 16 18 C -0.17 -2.36 6.15 -104.07 -0.64 -3.00 16 19 C -0.07 -0.69 6.74 -26.97 -0.18 -0.87 16 20 C -0.12 -0.90 7.08 -25.25 -0.18 -1.08 16 21 C -0.07 -0.59 6.79 -26.75 -0.18 -0.77 16 22 C 0.05 0.86 5.42 -3.70 -0.02 0.84 16 23 C 0.15 3.05 6.69 -3.60 -0.02 3.03 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.03 0.75 6.99 -51.93 -0.36 0.38 16 26 H 0.08 1.91 4.71 -51.93 -0.24 1.67 16 27 H 0.06 1.10 8.09 -51.93 -0.42 0.68 16 28 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 29 H 0.19 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.09 0.96 8.14 -51.92 -0.42 0.53 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 37 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.37 7.95 -51.93 -0.41 0.96 16 LS Contribution 308.75 15.07 4.65 4.65 Total: -1.00 -32.18 308.75 -9.98 -42.16 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -5.69 Total: -1.88 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -4.06 Total: 4.62 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -0.75 Total: -67.73 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.13 Total: 18.18 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.18 -9.98 -42.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071397991.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.787 kcal (2) G-P(sol) polarization free energy of solvation -32.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds