Wall clock time and date at job start Mon Mar 30 2020 01:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39868 * 126.04135 * 2 1 4 4 N 1.30837 * 108.20133 * 179.74430 * 3 2 1 5 5 N 1.40087 * 108.20687 * 0.40262 * 4 3 2 6 6 C 1.46499 * 126.03526 * 179.85388 * 5 4 3 7 7 C 1.53935 * 113.73257 * 165.92690 * 6 5 4 8 8 N 1.48193 * 86.10337 * 90.77914 * 7 6 5 9 9 C 1.46894 * 111.06841 * 137.52059 * 8 7 6 10 10 C 1.53005 * 109.47126 * 90.56980 * 9 8 7 11 11 H 1.08993 * 109.47126 * 304.99990 * 10 9 8 12 12 C 1.47198 * 109.46957 * 64.99556 * 10 9 8 13 13 N 6.08822 * 94.83939 * 211.92757 * 2 1 3 14 14 C 1.53000 * 109.47067 * 184.99524 * 10 9 8 15 15 C 1.50698 * 109.46811 * 174.99825 * 14 10 9 16 16 H 1.07997 * 120.00282 * 0.02562 * 15 14 10 17 17 C 1.37878 * 119.99966 * 179.97438 * 15 14 10 18 18 N 1.31527 * 119.99799 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00183 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47134 * 90.00322 * 19 17 15 21 21 H 1.48506 * 109.47396 * 210.00208 * 19 17 15 22 22 H 1.48498 * 109.47198 * 330.00129 * 19 17 15 23 23 C 1.47967 * 90.79407 * 24.60047 * 8 7 6 24 24 C 1.34948 * 107.92524 * 359.59325 * 5 4 3 25 25 H 1.09000 * 109.46782 * 269.99796 * 1 2 3 26 26 H 1.08992 * 109.47067 * 29.99374 * 1 2 3 27 27 H 1.08995 * 109.47008 * 149.99775 * 1 2 3 28 28 H 1.07996 * 125.89767 * 0.02562 * 3 2 1 29 29 H 1.09002 * 112.93874 * 34.36016 * 6 5 4 30 30 H 1.09000 * 113.76137 * 205.06289 * 7 6 5 31 31 H 1.09002 * 113.75885 * 336.42988 * 7 6 5 32 32 H 1.09001 * 109.46796 * 210.56619 * 9 8 7 33 33 H 1.08997 * 109.47858 * 330.56663 * 9 8 7 34 34 H 1.09000 * 109.47442 * 295.00037 * 14 10 9 35 35 H 1.08998 * 109.46948 * 55.00422 * 14 10 9 36 36 H 0.96995 * 119.99480 * 180.02562 * 18 17 15 37 37 H 1.09001 * 113.75575 * 221.08036 * 23 8 7 38 38 H 1.08994 * 113.85516 * 89.73429 * 23 8 7 39 39 H 1.08001 * 126.12711 * 180.21814 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1310 0.0000 4 7 3.5754 0.7301 0.0055 5 7 3.5844 -0.6707 -0.0001 6 6 4.7746 -1.5249 0.0003 7 6 4.4798 -2.9980 0.3360 8 7 4.3137 -3.1922 -1.1237 9 6 4.9538 -4.4378 -1.5669 10 6 3.9419 -5.5834 -1.4990 11 1 3.5267 -5.6423 -0.4930 12 6 2.8576 -5.3381 -2.4637 13 7 2.0207 -5.1488 -3.2083 14 6 4.6400 -6.9013 -1.8407 15 6 3.6750 -8.0438 -1.6547 16 1 2.6648 -7.8493 -1.3262 17 6 4.0815 -9.3373 -1.9051 18 7 5.3117 -9.5741 -2.3057 19 14 2.8852 -10.7533 -1.6753 20 1 2.1591 -10.9993 -2.9471 21 1 3.6339 -11.9761 -1.2883 22 1 1.9115 -10.4105 -0.6078 23 6 5.1794 -2.0241 -1.3985 24 6 2.3031 -1.0943 -0.0001 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5138 28 1 1.9952 2.1577 0.0004 29 1 5.6011 -1.1017 0.5712 30 1 5.3324 -3.5318 0.7558 31 1 3.5626 -3.1433 0.9067 32 1 5.3029 -4.3217 -2.5930 33 1 5.8006 -4.6620 -0.9183 34 1 4.9776 -6.8758 -2.8768 35 1 5.4977 -7.0395 -1.1824 36 1 5.5975 -10.4840 -2.4821 37 1 4.8201 -1.3928 -2.2112 38 1 6.2373 -2.2707 -1.4876 39 1 1.9724 -2.1224 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000072254005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:22 Heat of formation + Delta-G solvation = 132.151393 kcal Electronic energy + Delta-G solvation = -20386.315837 eV Core-core repulsion = 17331.750902 eV Total energy + Delta-G solvation = -3054.564935 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.55125 -39.72775 -36.44370 -33.98985 -33.00139 -32.03894 -31.16659 -28.78676 -26.84651 -26.44275 -25.36205 -22.99503 -21.81005 -21.74942 -20.25161 -19.49892 -17.06419 -16.92498 -16.61659 -15.88515 -15.17736 -15.00047 -14.54860 -14.28545 -14.15915 -13.43268 -13.32470 -13.12320 -13.00447 -12.74405 -12.55207 -12.39117 -11.99654 -11.89941 -11.58691 -11.50021 -11.27435 -11.21473 -11.08639 -10.75155 -10.60867 -10.52065 -10.28207 -9.59697 -9.42997 -9.29227 -8.93738 -8.50160 -8.31895 -6.14594 -4.17942 1.87337 2.35073 2.77885 3.26674 3.33490 3.36387 3.57620 3.69445 3.77683 3.99806 4.36066 4.47530 4.67807 4.77673 4.88981 5.00057 5.06112 5.23666 5.23965 5.26725 5.32596 5.42132 5.45130 5.55003 5.67313 5.68309 5.81956 5.82421 5.98568 6.07785 6.16069 6.35047 6.44447 6.64732 6.83394 7.03294 7.34780 7.45988 7.69582 7.80514 8.17515 8.52618 8.86766 9.47975 10.96284 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.003756 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.629784 B = 7452.544702 C = 8030.208599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.254 4.254 3 C 0.048 3.952 4 N -0.302 5.302 5 N -0.350 5.350 6 C 0.131 3.869 7 C -0.002 4.002 8 N -0.480 5.480 9 C 0.027 3.973 10 C 0.017 3.983 11 H 0.099 0.901 12 C 0.253 3.747 13 N -0.477 5.477 14 C 0.031 3.969 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.003 4.003 24 C 0.082 3.918 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.179 0.821 29 H 0.111 0.889 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.025 0.975 35 H 0.037 0.963 36 H 0.263 0.737 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.223 17.314 7.765 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.266 4.266 3 C -0.138 4.138 4 N -0.123 5.123 5 N -0.131 5.131 6 C 0.027 3.973 7 C -0.132 4.132 8 N -0.203 5.203 9 C -0.102 4.102 10 C -0.005 4.005 11 H 0.117 0.883 12 C -0.064 4.064 13 N -0.154 5.154 14 C -0.008 4.008 15 C -0.565 4.565 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.133 4.133 24 C -0.064 4.064 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.196 0.804 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.661 17.680 6.301 18.781 hybrid contribution -0.244 -1.402 0.541 1.522 sum -0.905 16.279 6.841 17.681 Atomic orbital electron populations 1.20020 0.89472 1.02114 1.01265 1.20126 0.97102 0.91916 1.17418 1.23743 0.90067 0.99653 1.00370 1.77299 1.21269 0.88740 1.24955 1.48062 1.04693 1.04012 1.56348 1.22550 0.86256 0.89831 0.98642 1.24576 1.03733 0.92062 0.92786 1.68708 1.42874 1.02656 1.06064 1.22827 0.96002 0.89256 1.02157 1.19104 0.89332 0.96992 0.95106 0.88282 1.28874 0.93525 0.90558 0.93416 1.81000 1.11673 1.11439 1.11299 1.19181 0.95866 0.87569 0.98141 1.21126 0.97848 0.91258 1.46252 0.92495 1.24954 0.95177 0.98981 0.94831 1.69938 1.16614 1.20839 1.45649 0.86589 0.81079 0.81738 0.78665 1.20608 1.21076 1.19711 1.24382 0.97938 0.93553 0.97399 1.22352 0.83841 1.00275 0.99981 0.92386 0.92130 0.92093 0.80391 0.87087 0.88249 0.88296 0.90089 0.91421 0.95631 0.94484 0.92763 0.88823 0.89148 0.80878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.37 36.01 0.37 -0.29 16 2 C -0.25 -2.98 6.10 -105.05 -0.64 -3.62 16 3 C 0.05 0.56 11.96 -17.37 -0.21 0.35 16 4 N -0.30 -4.04 12.58 30.62 0.39 -3.65 16 5 N -0.35 -4.32 3.81 -55.99 -0.21 -4.53 16 6 C 0.13 1.29 5.25 -69.62 -0.37 0.93 16 7 C 0.00 -0.02 7.14 -2.63 -0.02 -0.04 16 8 N -0.48 -5.76 5.61 -238.20 -1.34 -7.10 16 9 C 0.03 0.36 4.16 -3.83 -0.02 0.34 16 10 C 0.02 0.29 2.40 -93.41 -0.22 0.07 16 11 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 12 C 0.25 5.17 13.67 -20.76 -0.28 4.89 16 13 N -0.48 -10.72 18.54 42.15 0.78 -9.94 16 14 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 15 C -0.53 -13.73 8.60 -34.44 -0.30 -14.02 16 16 H 0.06 1.48 7.59 -52.49 -0.40 1.09 16 17 C 0.06 1.70 5.46 -17.81 -0.10 1.60 16 18 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 C 0.00 -0.03 7.75 -2.76 -0.02 -0.05 16 24 C 0.08 1.01 10.22 -17.22 -0.18 0.83 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.18 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.10 0.75 7.49 -51.93 -0.39 0.36 16 31 H 0.10 0.93 6.97 -51.93 -0.36 0.57 16 32 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.07 0.77 7.39 -51.93 -0.38 0.39 16 34 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 39 H 0.17 2.04 7.22 -52.49 -0.38 1.66 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -31.80 336.34 -7.38 -39.18 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -5.68 Total: -2.21 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -2.10 Total: -8.44 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.35 Total: -49.59 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.80 -7.38 -39.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072254005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.329 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds