Wall clock time and date at job start Mon Mar 30 2020 01:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39868 * 126.04135 * 2 1 4 4 N 1.30837 * 108.20133 * 179.74430 * 3 2 1 5 5 N 1.40087 * 108.20687 * 0.40262 * 4 3 2 6 6 C 1.46499 * 126.03526 * 179.85388 * 5 4 3 7 7 C 1.53935 * 113.73257 * 165.92690 * 6 5 4 8 8 N 1.48193 * 86.10337 * 90.77914 * 7 6 5 9 9 C 1.46894 * 111.06841 * 137.52059 * 8 7 6 10 10 C 1.53005 * 109.47126 * 90.56980 * 9 8 7 11 11 H 1.08993 * 109.47126 * 304.99990 * 10 9 8 12 12 C 1.47198 * 109.46957 * 64.99556 * 10 9 8 13 13 N 6.08822 * 94.83939 * 211.92757 * 2 1 3 14 14 C 1.53000 * 109.47067 * 184.99524 * 10 9 8 15 15 C 1.50698 * 109.46811 * 174.99825 * 14 10 9 16 16 H 1.07997 * 120.00282 * 0.02562 * 15 14 10 17 17 C 1.37878 * 119.99966 * 179.97438 * 15 14 10 18 18 N 1.31527 * 119.99799 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00183 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47134 * 90.00322 * 19 17 15 21 21 H 1.48506 * 109.47396 * 210.00208 * 19 17 15 22 22 H 1.48498 * 109.47198 * 330.00129 * 19 17 15 23 23 C 1.47967 * 90.79407 * 24.60047 * 8 7 6 24 24 C 1.34948 * 107.92524 * 359.59325 * 5 4 3 25 25 H 1.09000 * 109.46782 * 269.99796 * 1 2 3 26 26 H 1.08992 * 109.47067 * 29.99374 * 1 2 3 27 27 H 1.08995 * 109.47008 * 149.99775 * 1 2 3 28 28 H 1.07996 * 125.89767 * 0.02562 * 3 2 1 29 29 H 1.09002 * 112.93874 * 34.36016 * 6 5 4 30 30 H 1.09000 * 113.76137 * 205.06289 * 7 6 5 31 31 H 1.09002 * 113.75885 * 336.42988 * 7 6 5 32 32 H 1.09001 * 109.46796 * 210.56619 * 9 8 7 33 33 H 1.08997 * 109.47858 * 330.56663 * 9 8 7 34 34 H 1.09000 * 109.47442 * 295.00037 * 14 10 9 35 35 H 1.08998 * 109.46948 * 55.00422 * 14 10 9 36 36 H 0.96995 * 119.99480 * 180.02562 * 18 17 15 37 37 H 1.09001 * 113.75575 * 221.08036 * 23 8 7 38 38 H 1.08994 * 113.85516 * 89.73429 * 23 8 7 39 39 H 1.08001 * 126.12711 * 180.21814 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3300 1.1310 0.0000 4 7 3.5754 0.7301 0.0055 5 7 3.5844 -0.6707 -0.0001 6 6 4.7746 -1.5249 0.0003 7 6 4.4798 -2.9980 0.3360 8 7 4.3137 -3.1922 -1.1237 9 6 4.9538 -4.4378 -1.5669 10 6 3.9419 -5.5834 -1.4990 11 1 3.5267 -5.6423 -0.4930 12 6 2.8576 -5.3381 -2.4637 13 7 2.0207 -5.1488 -3.2083 14 6 4.6400 -6.9013 -1.8407 15 6 3.6750 -8.0438 -1.6547 16 1 2.6648 -7.8493 -1.3262 17 6 4.0815 -9.3373 -1.9051 18 7 5.3117 -9.5741 -2.3057 19 14 2.8852 -10.7533 -1.6753 20 1 2.1591 -10.9993 -2.9471 21 1 3.6339 -11.9761 -1.2883 22 1 1.9115 -10.4105 -0.6078 23 6 5.1794 -2.0241 -1.3985 24 6 2.3031 -1.0943 -0.0001 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5137 27 1 -0.3633 -0.8899 -0.5138 28 1 1.9952 2.1577 0.0004 29 1 5.6011 -1.1017 0.5712 30 1 5.3324 -3.5318 0.7558 31 1 3.5626 -3.1433 0.9067 32 1 5.3029 -4.3217 -2.5930 33 1 5.8006 -4.6620 -0.9183 34 1 4.9776 -6.8758 -2.8768 35 1 5.4977 -7.0395 -1.1824 36 1 5.5975 -10.4840 -2.4821 37 1 4.8201 -1.3928 -2.2112 38 1 6.2373 -2.2707 -1.4876 39 1 1.9724 -2.1224 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072254005.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:21 Heat of formation + Delta-G solvation = 111.763893 kcal Electronic energy + Delta-G solvation = -20387.199906 eV Core-core repulsion = 17331.750902 eV Total energy + Delta-G solvation = -3055.449004 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.40747 -40.61887 -38.00213 -35.66656 -34.39912 -33.26351 -32.19260 -30.02118 -27.94438 -27.34317 -26.56088 -24.25573 -23.44937 -22.66634 -21.12295 -20.32064 -18.61847 -18.27326 -17.76945 -17.04057 -16.55396 -16.08056 -15.84111 -15.34007 -15.17027 -14.72901 -14.39569 -14.30311 -14.16210 -13.78825 -13.76642 -13.58433 -13.45153 -13.10951 -12.99171 -12.69193 -12.58759 -12.54121 -12.46790 -12.19762 -12.14878 -11.77392 -11.49069 -11.33013 -11.09048 -10.55762 -10.32611 -9.79206 -9.18645 -8.20045 -6.27746 0.97355 1.39405 1.42380 1.50785 1.55478 1.90781 2.05749 2.12714 2.41065 2.77303 3.15649 3.21410 3.35116 3.64810 3.87549 3.98850 4.11407 4.24580 4.38656 4.43578 4.49849 4.55677 4.61269 4.65709 4.75307 4.80304 4.86254 4.94441 4.96576 5.01315 5.25518 5.33342 5.34529 5.47062 5.64017 5.78392 5.82125 5.92652 6.18726 6.21143 6.80869 6.83144 6.92875 7.40973 8.90681 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.026952 B = 0.003756 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.629784 B = 7452.544702 C = 8030.208599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.265 4.265 3 C 0.043 3.957 4 N -0.330 5.330 5 N -0.355 5.355 6 C 0.128 3.872 7 C 0.006 3.994 8 N -0.504 5.504 9 C 0.038 3.962 10 C 0.027 3.973 11 H 0.117 0.883 12 C 0.264 3.736 13 N -0.518 5.518 14 C 0.038 3.962 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.923 5.923 19 Si 0.945 3.055 20 H -0.286 1.286 21 H -0.278 1.278 22 H -0.264 1.264 23 C 0.003 3.997 24 C 0.066 3.934 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.205 0.795 29 H 0.131 0.869 30 H 0.127 0.873 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.096 0.904 34 H -0.001 1.001 35 H 0.040 0.960 36 H 0.264 0.736 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.047 17.942 9.165 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.276 4.276 3 C -0.142 4.142 4 N -0.150 5.150 5 N -0.137 5.137 6 C 0.025 3.975 7 C -0.123 4.123 8 N -0.227 5.227 9 C -0.091 4.091 10 C 0.005 3.995 11 H 0.135 0.865 12 C -0.052 4.052 13 N -0.196 5.196 14 C -0.001 4.001 15 C -0.576 4.576 16 H 0.071 0.929 17 C -0.186 4.186 18 N -0.563 5.563 19 Si 0.771 3.229 20 H -0.212 1.212 21 H -0.203 1.203 22 H -0.188 1.188 23 C -0.126 4.126 24 C -0.080 4.080 25 H 0.087 0.913 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.221 0.779 29 H 0.148 0.852 30 H 0.145 0.855 31 H 0.116 0.884 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.017 0.983 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.135 0.865 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -0.488 18.318 7.713 19.881 hybrid contribution -0.315 -1.565 0.094 1.599 sum -0.803 16.752 7.807 18.500 Atomic orbital electron populations 1.20049 0.88093 1.02413 1.02058 1.20493 0.98259 0.91870 1.16977 1.24223 0.89595 1.00915 0.99489 1.77238 1.22295 0.89500 1.26016 1.48282 1.05248 1.03908 1.56237 1.22722 0.86132 0.90046 0.98579 1.24674 1.04833 0.91669 0.91137 1.68642 1.43716 1.02272 1.08085 1.22676 0.95270 0.88519 1.02643 1.19100 0.89086 0.96436 0.94889 0.86501 1.29496 0.93285 0.89419 0.93010 1.80995 1.13144 1.12836 1.12596 1.19005 0.95550 0.89025 0.96532 1.21555 0.98271 0.92551 1.45258 0.92926 1.25678 0.96552 1.01412 0.94987 1.70024 1.18017 1.21308 1.46924 0.85746 0.79402 0.79379 0.78383 1.21225 1.20350 1.18781 1.24387 0.98974 0.92323 0.96921 1.22515 0.84332 1.00580 1.00563 0.91301 0.90870 0.92738 0.77854 0.85159 0.85515 0.88406 0.90935 0.88614 0.98304 0.94193 0.92734 0.91028 0.86515 0.80833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.19 10.37 71.24 0.74 -0.45 16 2 C -0.26 -5.95 6.10 -20.14 -0.12 -6.07 16 3 C 0.04 0.95 11.96 85.24 1.02 1.97 16 4 N -0.33 -8.46 12.58 -57.03 -0.72 -9.18 16 5 N -0.36 -8.34 3.81 -331.07 -1.26 -9.60 16 6 C 0.13 2.25 5.25 46.55 0.24 2.50 16 7 C 0.01 0.10 7.14 86.36 0.62 0.71 16 8 N -0.50 -11.08 5.61 -907.54 -5.09 -16.18 16 9 C 0.04 0.94 4.16 86.31 0.36 1.30 16 10 C 0.03 0.90 2.40 -12.60 -0.03 0.87 16 11 H 0.12 3.56 8.14 -2.39 -0.02 3.54 16 12 C 0.26 10.68 13.67 89.44 1.22 11.90 16 13 N -0.52 -23.35 18.54 20.01 0.37 -22.98 16 14 C 0.04 1.66 4.42 29.85 0.13 1.79 16 15 C -0.54 -27.80 8.60 25.60 0.22 -27.58 16 16 H 0.05 2.71 7.59 -2.91 -0.02 2.68 16 17 C 0.01 0.68 5.46 84.65 0.46 1.15 16 18 N -0.92 -51.95 13.29 21.45 0.28 -51.67 16 19 Si 0.94 42.76 29.54 68.60 2.03 44.79 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.74 16 23 C 0.00 0.06 7.75 86.41 0.67 0.73 16 24 C 0.07 1.59 10.22 83.54 0.85 2.44 16 25 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.20 3.08 8.06 -2.91 -0.02 3.06 16 29 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.13 1.35 7.49 -2.39 -0.02 1.34 16 31 H 0.10 1.61 6.97 -2.39 -0.02 1.59 16 32 H 0.07 1.91 8.08 -2.39 -0.02 1.89 16 33 H 0.10 1.82 7.39 -2.39 -0.02 1.80 16 34 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.12 1.55 7.93 -2.39 -0.02 1.53 16 39 H 0.17 4.00 7.22 -2.91 -0.02 3.98 16 Total: -1.00 -68.34 336.34 3.03 -65.31 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 1.04 Total: 8.25 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 6.39 Total: -8.75 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -6.42 Total: -109.60 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -68.34 3.03 -65.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072254005.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.070 kcal (2) G-P(sol) polarization free energy of solvation -68.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds