Wall clock time and date at job start Mon Mar 30 2020 03:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00181 * 2 1 4 4 H 1.48499 * 109.47287 * 270.00430 * 3 2 1 5 5 H 1.48505 * 109.46931 * 30.00207 * 3 2 1 6 6 H 1.48503 * 109.47186 * 149.99942 * 3 2 1 7 7 C 1.37885 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99683 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99896 * 180.02562 * 7 2 1 10 10 C 1.53007 * 109.46863 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46798 * 179.97438 * 10 9 7 12 12 N 1.46904 * 109.46781 * 179.97438 * 11 10 9 13 13 C 1.48533 * 111.00306 * 307.39798 * 12 11 10 14 14 C 1.54934 * 103.22645 * 200.27895 * 13 12 11 15 15 C 1.54594 * 102.92118 * 37.41380 * 14 13 12 16 16 H 1.08996 * 110.39141 * 97.00171 * 15 14 13 17 17 N 1.46508 * 110.30656 * 219.12599 * 15 14 13 18 18 C 1.39677 * 119.99667 * 270.71670 * 17 15 14 19 19 C 1.38912 * 120.07048 * 179.97438 * 18 17 15 20 20 C 1.38099 * 119.92393 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.07607 * 0.02562 * 20 19 18 22 22 C 1.38288 * 120.14912 * 359.97438 * 21 20 19 23 23 C 1.38107 * 120.07582 * 0.02562 * 22 21 20 24 24 C 1.47897 * 110.99817 * 189.99821 * 12 11 10 25 25 H 0.96998 * 120.00025 * 359.97438 * 1 2 3 26 26 H 1.08996 * 109.47341 * 59.99662 * 9 7 2 27 27 H 1.09007 * 109.47180 * 299.99334 * 9 7 2 28 28 H 1.09002 * 109.46721 * 59.99851 * 10 9 7 29 29 H 1.08999 * 109.46865 * 299.99925 * 10 9 7 30 30 H 1.08996 * 109.47201 * 59.99843 * 11 10 9 31 31 H 1.08999 * 109.47525 * 299.99733 * 11 10 9 32 32 H 1.09003 * 110.66605 * 318.71837 * 13 12 11 33 33 H 1.09001 * 110.66377 * 81.67569 * 13 12 11 34 34 H 1.09004 * 110.72325 * 279.05416 * 14 13 12 35 35 H 1.08994 * 110.72210 * 155.77135 * 14 13 12 36 36 H 0.96993 * 119.99599 * 90.71507 * 17 15 14 37 37 H 1.08001 * 120.03609 * 0.02562 * 19 18 17 38 38 H 1.07995 * 119.96616 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.92755 * 179.72532 * 21 20 19 40 40 H 1.07997 * 119.96260 * 179.97438 * 22 21 20 41 41 H 1.07996 * 120.03841 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.91639 * 26.49523 * 24 12 11 43 43 H 1.08999 * 109.92102 * 265.19734 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6366 -0.0001 12 7 6.0412 -4.0216 0.0004 13 6 5.4246 -4.8038 1.1023 14 6 6.3996 -5.9947 1.2803 15 6 7.7838 -5.3453 1.0519 16 1 8.2466 -5.0923 2.0058 17 7 8.6503 -6.2492 0.2912 18 6 9.4510 -7.1773 0.9609 19 6 10.2726 -8.0354 0.2411 20 6 11.0626 -8.9522 0.9064 21 6 11.0360 -9.0169 2.2875 22 6 10.2191 -8.1641 3.0071 23 6 9.4265 -7.2449 2.3482 24 6 7.4999 -4.0679 0.2401 25 1 -0.4850 0.8400 0.0004 26 1 3.8745 -0.6808 0.8904 27 1 3.8752 -0.6797 -0.8896 28 1 3.6585 -3.1502 -0.8903 29 1 3.6578 -3.1506 0.8897 30 1 5.9149 -2.1228 0.8898 31 1 5.9149 -2.1227 -0.8901 32 1 5.3732 -4.2090 2.0143 33 1 4.4329 -5.1546 0.8169 34 1 6.2073 -6.7655 0.5339 35 1 6.3275 -6.4050 2.2874 36 1 8.6678 -6.2031 -0.6775 37 1 10.2936 -7.9857 -0.8375 38 1 11.7020 -9.6194 0.3475 39 1 11.6514 -9.7377 2.8051 40 1 10.2004 -8.2175 4.0856 41 1 8.7892 -6.5789 2.9108 42 1 7.8110 -3.1907 0.8072 43 1 8.0314 -4.1065 -0.7107 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076758464.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:08 Heat of formation + Delta-G solvation = 6.004163 kcal Electronic energy + Delta-G solvation = -20194.393749 eV Core-core repulsion = 17237.899003 eV Total energy + Delta-G solvation = -2956.494746 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.76784 -39.61639 -36.76644 -35.46011 -33.90615 -31.93326 -31.46875 -30.36898 -28.86423 -27.47040 -24.68184 -23.57809 -22.91879 -22.45042 -21.38366 -21.04605 -18.93832 -18.56633 -17.25861 -16.83207 -16.72863 -16.20887 -16.14032 -15.65131 -14.95613 -14.89071 -14.71679 -14.58775 -14.21776 -14.16641 -13.96715 -13.42858 -13.29835 -13.22254 -12.77082 -12.59950 -12.43318 -12.28798 -12.12244 -11.96115 -11.76745 -11.66312 -11.49463 -11.45959 -11.26941 -10.92342 -10.77028 -9.76382 -9.39485 -8.30127 -8.28032 -6.34576 0.60260 0.78445 1.35537 1.37384 1.49455 2.35712 2.46778 3.00895 3.04999 3.07048 3.53543 3.75564 3.98233 4.15922 4.17946 4.21173 4.26205 4.31548 4.42767 4.44891 4.61563 4.63946 4.67047 4.69982 4.80866 4.82890 4.88609 4.93913 4.99435 5.02072 5.10975 5.17301 5.22765 5.47458 5.49203 5.57858 5.64885 5.68022 5.81719 5.91896 6.02135 6.06685 6.28855 6.48692 6.73619 6.86386 7.29918 8.86842 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.053558 B = 0.002591 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.671591 B =10804.567651 C =10910.416145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.000 4.000 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.245 1.245 7 C -0.533 4.533 8 H 0.028 0.972 9 C -0.010 4.010 10 C -0.091 4.091 11 C 0.056 3.944 12 N -0.525 5.525 13 C 0.033 3.967 14 C -0.128 4.128 15 C 0.151 3.849 16 H 0.093 0.907 17 N -0.734 5.734 18 C 0.207 3.793 19 C -0.210 4.210 20 C -0.080 4.080 21 C -0.194 4.194 22 C -0.082 4.082 23 C -0.215 4.215 24 C 0.030 3.970 25 H 0.266 0.734 26 H 0.020 0.980 27 H 0.020 0.980 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.047 0.953 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.404 0.596 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.059 0.941 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.429 -15.360 3.992 29.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.197 4.197 3 Si 0.778 3.222 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.168 1.168 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.048 4.048 10 C -0.129 4.129 11 C -0.072 4.072 12 N -0.250 5.250 13 C -0.095 4.095 14 C -0.168 4.168 15 C 0.045 3.955 16 H 0.111 0.889 17 N -0.363 5.363 18 C 0.104 3.896 19 C -0.233 4.233 20 C -0.099 4.099 21 C -0.214 4.214 22 C -0.100 4.100 23 C -0.238 4.238 24 C -0.098 4.098 25 H 0.075 0.925 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.102 0.898 36 H 0.241 0.759 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.141 0.859 42 H 0.077 0.923 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 25.048 -15.339 3.595 29.590 hybrid contribution -0.461 1.180 0.284 1.299 sum 24.586 -14.158 3.880 28.636 Atomic orbital electron populations 1.70079 1.08379 1.28190 1.52689 1.26094 0.95692 1.03760 0.94107 0.85589 0.79474 0.77894 0.79252 1.19105 1.20987 1.16808 1.21502 0.92269 0.92996 1.50373 0.95338 1.19494 0.93784 0.94969 0.96524 1.21336 0.93847 0.97048 1.00701 1.22286 0.94999 0.88940 1.01009 1.64812 1.04473 1.12069 1.43626 1.23211 0.98871 0.94672 0.92747 1.22956 0.93978 0.97219 1.02600 1.21664 0.90041 0.88585 0.95245 0.88945 1.44778 1.45381 1.37831 1.08328 1.18036 0.90240 0.89333 0.92036 1.20822 1.02060 1.00266 1.00116 1.21171 0.97121 0.96842 0.94742 1.21185 1.03130 1.02601 0.94458 1.21178 0.94412 0.93996 1.00447 1.20864 1.05979 1.04287 0.92636 1.23154 0.89082 0.96929 1.00629 0.92502 0.96176 0.96202 0.93486 0.93298 0.94280 0.90436 0.93507 0.90986 0.90948 0.89831 0.75934 0.85391 0.84489 0.84996 0.84830 0.85935 0.92269 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.65 13.96 21.45 0.30 -60.35 16 2 C 0.00 -0.01 5.47 84.66 0.46 0.46 16 3 Si 0.95 44.49 27.47 68.60 1.88 46.37 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 7 C -0.53 -31.37 9.66 25.60 0.25 -31.12 16 8 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 9 C -0.01 -0.46 4.04 29.85 0.12 -0.34 16 10 C -0.09 -3.59 4.81 30.60 0.15 -3.44 16 11 C 0.06 1.69 5.03 86.30 0.43 2.13 16 12 N -0.53 -13.83 5.40 -883.03 -4.76 -18.59 16 13 C 0.03 0.83 5.11 86.65 0.44 1.27 16 14 C -0.13 -2.55 6.78 31.80 0.22 -2.33 16 15 C 0.15 2.69 3.05 45.87 0.14 2.83 16 16 H 0.09 1.54 6.42 -2.39 -0.02 1.53 16 17 N -0.73 -12.43 5.23 -314.80 -1.65 -14.08 16 18 C 0.21 3.79 6.65 38.21 0.25 4.05 16 19 C -0.21 -3.54 9.90 22.40 0.22 -3.32 16 20 C -0.08 -1.23 10.04 22.25 0.22 -1.00 16 21 C -0.19 -2.96 10.04 22.29 0.22 -2.74 16 22 C -0.08 -1.32 10.04 22.25 0.22 -1.10 16 23 C -0.22 -3.88 9.22 22.40 0.21 -3.67 16 24 C 0.03 0.61 6.47 86.45 0.56 1.17 16 25 H 0.27 15.75 8.31 -92.71 -0.77 14.97 16 26 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 27 H 0.02 0.90 7.57 -2.38 -0.02 0.88 16 28 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.05 1.94 6.79 -2.39 -0.02 1.93 16 30 H 0.04 1.14 7.81 -2.39 -0.02 1.12 16 31 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.05 1.18 8.00 -2.39 -0.02 1.16 16 33 H 0.07 2.02 7.65 -2.39 -0.02 2.01 16 34 H 0.07 1.57 8.06 -2.39 -0.02 1.55 16 35 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.40 6.20 8.36 -92.71 -0.78 5.43 16 37 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.13 1.48 8.06 -2.91 -0.02 1.46 16 40 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 41 H 0.12 2.04 6.21 -2.91 -0.02 2.02 16 42 H 0.06 1.15 7.57 -2.39 -0.02 1.13 16 43 H 0.09 1.67 7.65 -2.39 -0.02 1.66 16 Total: -1.00 -67.09 341.35 0.04 -67.05 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.15 Total: 16.76 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 4.12 Total: -37.17 kcal Atomic # 7 Polarization: -86.90 SS G_CDS: -6.11 Total: -93.02 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -67.09 0.04 -67.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076758464.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.057 kcal (2) G-P(sol) polarization free energy of solvation -67.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds