Wall clock time and date at job start Mon Mar 30 2020 02:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47198 * 2 1 4 4 C 1.53007 * 109.46969 * 239.99890 * 2 1 3 5 5 C 1.52992 * 109.47251 * 299.99859 * 4 2 1 6 6 C 1.53000 * 109.47128 * 300.00271 * 5 4 2 7 7 H 1.08997 * 109.47264 * 300.00013 * 6 5 4 8 8 O 1.42901 * 109.46976 * 179.97438 * 6 5 4 9 9 C 1.35678 * 116.99860 * 83.62524 * 8 6 5 10 10 C 1.39317 * 119.81812 * 174.48460 * 9 8 6 11 11 C 1.36433 * 120.18639 * 179.71813 * 10 9 8 12 12 C 1.40832 * 119.81102 * 0.56152 * 11 10 9 13 13 C 1.41209 * 120.18072 * 179.69869 * 12 11 10 14 14 H 1.08004 * 120.00195 * 206.52940 * 13 12 11 15 15 C 1.39895 * 120.00151 * 26.52891 * 13 12 11 16 16 N 1.30876 * 119.99990 * 13.12249 * 15 13 12 17 17 Si 1.86799 * 119.99951 * 193.11783 * 15 13 12 18 18 H 1.48496 * 109.47083 * 90.00245 * 17 15 13 19 19 H 1.48509 * 109.46938 * 209.99784 * 17 15 13 20 20 H 1.48493 * 109.47283 * 330.00015 * 17 15 13 21 21 C 1.40839 * 119.64076 * 359.71394 * 12 11 10 22 22 C 1.36434 * 119.80961 * 0.02562 * 21 12 11 23 23 C 1.52995 * 109.47483 * 60.00202 * 6 5 4 24 24 C 1.52992 * 109.47068 * 120.00070 * 2 1 3 25 25 H 1.08997 * 109.47242 * 180.02562 * 24 2 1 26 26 C 1.53009 * 109.47204 * 300.00118 * 24 2 1 27 27 H 1.08998 * 109.47452 * 299.99712 * 1 2 3 28 28 H 1.09006 * 109.47037 * 60.00424 * 1 2 3 29 29 H 1.09005 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46776 * 60.00098 * 4 2 1 31 31 H 1.09004 * 109.46748 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47191 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.47403 * 60.00207 * 5 4 2 34 34 H 1.08006 * 119.90125 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.09724 * 180.27135 * 11 10 9 36 36 H 0.96996 * 120.00481 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.09309 * 179.97438 * 21 12 11 38 38 H 1.08005 * 119.90656 * 179.97438 * 22 21 12 39 39 H 1.09004 * 109.47247 * 59.99332 * 23 6 5 40 40 H 1.08998 * 109.47429 * 179.97438 * 23 6 5 41 41 H 1.09004 * 109.46901 * 180.02562 * 26 24 2 42 42 H 1.09000 * 109.46890 * 299.99965 * 26 24 2 43 43 H 1.08997 * 109.46990 * 59.99883 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 1 3.1300 -2.8849 0.0000 8 8 1.5632 -4.2321 0.0003 9 6 2.2752 -5.1376 -0.7167 10 6 1.9314 -6.4867 -0.6650 11 6 2.6386 -7.4029 -1.3874 12 6 3.7261 -6.9831 -2.1776 13 6 4.4673 -7.9256 -2.9234 14 1 5.4999 -7.7274 -3.1701 15 6 3.8641 -9.1162 -3.3428 16 7 2.5640 -9.2502 -3.2751 17 14 4.9143 -10.5144 -3.9996 18 1 5.3135 -11.4025 -2.8784 19 1 4.1348 -11.2937 -4.9949 20 1 6.1294 -9.9587 -4.6476 21 6 4.0705 -5.6182 -2.2198 22 6 3.3497 -4.7141 -1.4955 23 6 1.5300 -2.1638 1.2492 24 6 2.0400 -0.7212 1.2492 25 1 3.1300 -0.7208 1.2494 26 6 1.5299 0.0000 2.4985 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2495 32 1 1.8937 -2.6777 -2.1390 33 1 0.4400 -2.1638 -1.2493 34 1 1.1002 -6.8076 -0.0546 35 1 2.3681 -8.4479 -1.3497 36 1 2.1457 -10.0758 -3.5655 37 1 4.9034 -5.2882 -2.8230 38 1 3.6128 -3.6670 -1.5263 39 1 0.4400 -2.1637 1.2492 40 1 1.8930 -2.6779 2.1392 41 1 1.8937 -0.5136 3.3885 42 1 1.8933 1.0277 2.4985 43 1 0.4400 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085025814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:35 Heat of formation + Delta-G solvation = -49.205012 kcal Electronic energy + Delta-G solvation = -21251.354730 eV Core-core repulsion = 18260.173183 eV Total energy + Delta-G solvation = -2991.181547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.94356 -38.13303 -36.18758 -33.29530 -32.39814 -31.12837 -29.50169 -28.96862 -27.45901 -25.67857 -24.77293 -22.53574 -21.58178 -20.74820 -20.13511 -18.48219 -17.28862 -16.85520 -15.73096 -15.23574 -15.10787 -14.68081 -14.42975 -13.91213 -13.80718 -13.24348 -12.85345 -12.78495 -12.55683 -12.35030 -12.15875 -12.02497 -11.85626 -11.78592 -11.50310 -11.33568 -11.12514 -10.95173 -10.81222 -10.69783 -10.57464 -10.35841 -10.19150 -10.00198 -9.74708 -9.64312 -9.24712 -8.99010 -7.59234 -6.93466 -6.64748 -4.22875 2.81609 2.99523 3.10891 3.14253 3.24309 3.98588 4.05380 4.63137 4.68096 4.70703 4.88389 5.11381 5.19625 5.31873 5.33774 5.44357 5.55043 5.57918 5.61019 5.70635 5.70812 5.85355 5.88275 5.93427 5.98065 6.00257 6.09200 6.14068 6.24113 6.27429 6.29269 6.36625 6.49228 6.59254 6.81030 7.03034 7.16666 7.25145 7.53767 7.61158 7.84923 8.05103 8.26046 8.52677 8.71489 8.95059 9.03881 10.29342 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.044841 B = 0.003522 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.278688 B = 7948.070654 C = 8084.437632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.146 4.146 6 C 0.095 3.905 7 H 0.063 0.937 8 O -0.324 6.324 9 C 0.000 4.000 10 C -0.125 4.125 11 C -0.129 4.129 12 C 0.085 3.915 13 C -0.464 4.464 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.806 5.806 17 Si 0.909 3.091 18 H -0.269 1.269 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.195 4.195 22 C -0.171 4.171 23 C -0.110 4.110 24 C -0.084 4.084 25 H 0.070 0.930 26 C -0.147 4.147 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.278 0.722 37 H 0.093 0.907 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.477 14.162 6.307 15.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.105 4.105 3 H 0.085 0.915 4 C -0.149 4.149 5 C -0.184 4.184 6 C 0.038 3.962 7 H 0.080 0.920 8 O -0.240 6.240 9 C -0.043 4.043 10 C -0.144 4.144 11 C -0.149 4.149 12 C 0.083 3.917 13 C -0.495 4.495 14 H 0.093 0.907 15 C -0.143 4.143 16 N -0.433 5.433 17 Si 0.734 3.266 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.188 1.188 21 C -0.215 4.215 22 C -0.189 4.189 23 C -0.147 4.147 24 C -0.102 4.102 25 H 0.088 0.912 26 C -0.204 4.204 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.832 13.955 6.346 15.589 hybrid contribution 0.593 -0.566 -0.597 1.014 sum -2.239 13.388 5.749 14.741 Atomic orbital electron populations 1.22009 0.95373 1.02518 1.01198 1.21141 0.96088 0.98752 0.94559 0.91452 1.21527 1.00544 0.95461 0.97406 1.22142 1.01872 0.95201 0.99178 1.22038 0.98226 0.81461 0.94504 0.91950 1.85868 1.52332 1.16812 1.68980 1.18621 0.96396 0.88855 1.00440 1.19876 1.01472 0.90128 1.02951 1.21043 0.98015 0.98951 0.96842 1.17598 0.92206 0.91093 0.90804 1.19461 0.98691 1.00975 1.30327 0.90706 1.25856 0.94942 0.99275 0.94238 1.69804 1.09895 1.26409 1.37186 0.86298 0.80576 0.80660 0.79033 1.19427 1.20417 1.18796 1.20607 1.02969 0.93267 1.04647 1.20460 0.98443 0.98123 1.01919 1.21624 1.01813 0.94090 0.97179 1.21085 1.00216 0.94224 0.94697 0.91182 1.21867 1.01487 0.99877 0.97192 0.92674 0.93049 0.91669 0.91852 0.92027 0.91009 0.91128 0.88591 0.85449 0.91066 0.88852 0.88539 0.90963 0.91493 0.92722 0.92806 0.92287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.15 37.16 0.30 -1.20 16 2 C -0.09 -0.88 2.72 -90.62 -0.25 -1.13 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.11 -1.30 5.45 -26.73 -0.15 -1.45 16 5 C -0.15 -2.16 4.87 -26.74 -0.13 -2.29 16 6 C 0.09 1.54 2.12 -26.73 -0.06 1.48 16 7 H 0.06 1.05 6.37 -51.93 -0.33 0.72 16 8 O -0.32 -6.71 9.79 -18.74 -0.18 -6.89 16 9 C 0.00 0.00 6.61 -38.78 -0.26 -0.25 16 10 C -0.13 -3.09 9.92 -39.83 -0.40 -3.48 16 11 C -0.13 -3.42 8.62 -39.25 -0.34 -3.76 16 12 C 0.09 2.31 5.57 -106.80 -0.59 1.71 16 13 C -0.46 -12.50 9.05 -37.83 -0.34 -12.84 16 14 H 0.07 1.94 7.88 -52.48 -0.41 1.52 16 15 C 0.07 1.85 5.22 -17.34 -0.09 1.76 16 16 N -0.81 -21.20 10.81 55.54 0.60 -20.60 16 17 Si 0.91 19.02 29.58 -169.99 -5.03 13.99 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 20 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 21 C -0.20 -4.86 9.74 -39.25 -0.38 -5.24 16 22 C -0.17 -3.90 8.11 -39.83 -0.32 -4.23 16 23 C -0.11 -1.44 4.58 -26.73 -0.12 -1.56 16 24 C -0.08 -0.89 2.49 -90.62 -0.23 -1.11 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 C -0.15 -1.30 8.84 37.16 0.33 -0.97 16 27 H 0.05 0.48 6.43 -51.93 -0.33 0.14 16 28 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.72 4.81 -51.93 -0.25 0.47 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 1.21 6.76 -51.93 -0.35 0.85 16 33 H 0.07 1.04 6.43 -51.93 -0.33 0.70 16 34 H 0.10 2.19 8.06 -52.48 -0.42 1.76 16 35 H 0.13 3.46 6.12 -52.49 -0.32 3.14 16 36 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 37 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.10 1.94 5.35 -52.48 -0.28 1.66 16 39 H 0.07 0.94 6.43 -51.93 -0.33 0.61 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.50 6.43 -51.93 -0.33 0.17 16 LS Contribution 326.12 15.07 4.91 4.91 Total: -1.00 -27.80 326.12 -9.36 -37.16 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: -6.64 Total: 5.98 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: -3.02 Total: -34.56 kcal Atomic # 7 Polarization: -21.20 SS G_CDS: 0.60 Total: -20.60 kcal Atomic # 8 Polarization: -6.71 SS G_CDS: -0.18 Total: -6.89 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.80 -9.36 -37.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.046 kcal (2) G-P(sol) polarization free energy of solvation -27.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds