Wall clock time and date at job start Mon Mar 30 2020 02:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47198 * 2 1 4 4 C 1.53007 * 109.46969 * 239.99890 * 2 1 3 5 5 C 1.52992 * 109.47251 * 299.99859 * 4 2 1 6 6 C 1.53000 * 109.47128 * 300.00271 * 5 4 2 7 7 H 1.08997 * 109.47264 * 300.00013 * 6 5 4 8 8 O 1.42901 * 109.46976 * 179.97438 * 6 5 4 9 9 C 1.35678 * 116.99860 * 83.62524 * 8 6 5 10 10 C 1.39317 * 119.81812 * 174.48460 * 9 8 6 11 11 C 1.36433 * 120.18639 * 179.71813 * 10 9 8 12 12 C 1.40832 * 119.81102 * 0.56152 * 11 10 9 13 13 C 1.41209 * 120.18072 * 179.69869 * 12 11 10 14 14 H 1.08004 * 120.00195 * 206.52940 * 13 12 11 15 15 C 1.39895 * 120.00151 * 26.52891 * 13 12 11 16 16 N 1.30876 * 119.99990 * 13.12249 * 15 13 12 17 17 Si 1.86799 * 119.99951 * 193.11783 * 15 13 12 18 18 H 1.48496 * 109.47083 * 90.00245 * 17 15 13 19 19 H 1.48509 * 109.46938 * 209.99784 * 17 15 13 20 20 H 1.48493 * 109.47283 * 330.00015 * 17 15 13 21 21 C 1.40839 * 119.64076 * 359.71394 * 12 11 10 22 22 C 1.36434 * 119.80961 * 0.02562 * 21 12 11 23 23 C 1.52995 * 109.47483 * 60.00202 * 6 5 4 24 24 C 1.52992 * 109.47068 * 120.00070 * 2 1 3 25 25 H 1.08997 * 109.47242 * 180.02562 * 24 2 1 26 26 C 1.53009 * 109.47204 * 300.00118 * 24 2 1 27 27 H 1.08998 * 109.47452 * 299.99712 * 1 2 3 28 28 H 1.09006 * 109.47037 * 60.00424 * 1 2 3 29 29 H 1.09005 * 109.46732 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46776 * 60.00098 * 4 2 1 31 31 H 1.09004 * 109.46748 * 179.97438 * 4 2 1 32 32 H 1.08996 * 109.47191 * 180.02562 * 5 4 2 33 33 H 1.09004 * 109.47403 * 60.00207 * 5 4 2 34 34 H 1.08006 * 119.90125 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.09724 * 180.27135 * 11 10 9 36 36 H 0.96996 * 120.00481 * 180.02562 * 16 15 13 37 37 H 1.08000 * 120.09309 * 179.97438 * 21 12 11 38 38 H 1.08005 * 119.90656 * 179.97438 * 22 21 12 39 39 H 1.09004 * 109.47247 * 59.99332 * 23 6 5 40 40 H 1.08998 * 109.47429 * 179.97438 * 23 6 5 41 41 H 1.09004 * 109.46901 * 180.02562 * 26 24 2 42 42 H 1.09000 * 109.46890 * 299.99965 * 26 24 2 43 43 H 1.08997 * 109.46990 * 59.99883 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5301 -2.1637 -1.2493 6 6 2.0400 -2.8850 0.0000 7 1 3.1300 -2.8849 0.0000 8 8 1.5632 -4.2321 0.0003 9 6 2.2752 -5.1376 -0.7167 10 6 1.9314 -6.4867 -0.6650 11 6 2.6386 -7.4029 -1.3874 12 6 3.7261 -6.9831 -2.1776 13 6 4.4673 -7.9256 -2.9234 14 1 5.4999 -7.7274 -3.1701 15 6 3.8641 -9.1162 -3.3428 16 7 2.5640 -9.2502 -3.2751 17 14 4.9143 -10.5144 -3.9996 18 1 5.3135 -11.4025 -2.8784 19 1 4.1348 -11.2937 -4.9949 20 1 6.1294 -9.9587 -4.6476 21 6 4.0705 -5.6182 -2.2198 22 6 3.3497 -4.7141 -1.4955 23 6 1.5300 -2.1638 1.2492 24 6 2.0400 -0.7212 1.2492 25 1 3.1300 -0.7208 1.2494 26 6 1.5299 0.0000 2.4985 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6766 -0.2074 -2.1393 31 1 3.1300 -0.7209 -1.2495 32 1 1.8937 -2.6777 -2.1390 33 1 0.4400 -2.1638 -1.2493 34 1 1.1002 -6.8076 -0.0546 35 1 2.3681 -8.4479 -1.3497 36 1 2.1457 -10.0758 -3.5655 37 1 4.9034 -5.2882 -2.8230 38 1 3.6128 -3.6670 -1.5263 39 1 0.4400 -2.1637 1.2492 40 1 1.8930 -2.6779 2.1392 41 1 1.8937 -0.5136 3.3885 42 1 1.8933 1.0277 2.4985 43 1 0.4400 0.0000 2.4985 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085025814.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:33 Heat of formation + Delta-G solvation = -61.445225 kcal Electronic energy + Delta-G solvation = -21251.885506 eV Core-core repulsion = 18260.173183 eV Total energy + Delta-G solvation = -2991.712323 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25433 -39.63793 -37.89106 -35.19394 -33.38984 -32.37546 -31.32765 -30.82845 -28.40109 -26.75011 -26.50270 -23.93796 -22.79011 -22.53679 -21.71849 -19.57905 -19.14822 -18.46769 -17.04126 -16.82679 -16.30674 -15.99048 -15.78651 -15.65148 -15.04371 -14.67600 -14.32557 -14.07576 -13.95416 -13.73854 -13.51059 -13.42232 -13.01589 -12.93787 -12.82925 -12.73084 -12.65751 -12.45829 -12.21658 -11.95581 -11.77128 -11.66038 -11.49018 -11.29357 -11.16216 -11.01925 -10.96524 -10.70428 -9.55689 -8.86797 -8.55819 -6.24330 0.94853 1.02796 1.39629 1.52044 1.53377 2.23503 2.60046 2.74877 3.67169 3.72940 3.73919 3.93520 4.11376 4.17174 4.19246 4.31997 4.34652 4.39327 4.50754 4.58778 4.68652 4.73706 4.79082 4.86665 4.96492 5.03992 5.04554 5.08638 5.12868 5.15607 5.17773 5.23729 5.26667 5.32548 5.37216 5.45378 5.50958 5.61206 5.66221 5.68561 5.90269 6.06104 6.27534 6.58584 6.83233 6.96097 7.11680 8.40295 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.044841 B = 0.003522 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.278688 B = 7948.070654 C = 8084.437632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.083 4.083 3 H 0.089 0.911 4 C -0.108 4.108 5 C -0.142 4.142 6 C 0.086 3.914 7 H 0.057 0.943 8 O -0.335 6.335 9 C 0.009 3.991 10 C -0.139 4.139 11 C -0.147 4.147 12 C 0.053 3.947 13 C -0.500 4.500 14 H 0.075 0.925 15 C 0.030 3.970 16 N -0.838 5.838 17 Si 0.985 3.015 18 H -0.263 1.263 19 H -0.269 1.269 20 H -0.259 1.259 21 C -0.206 4.206 22 C -0.166 4.166 23 C -0.104 4.104 24 C -0.080 4.080 25 H 0.071 0.929 26 C -0.144 4.144 27 H 0.068 0.932 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.286 0.714 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 16.012 6.673 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.102 4.102 3 H 0.107 0.893 4 C -0.146 4.146 5 C -0.180 4.180 6 C 0.030 3.970 7 H 0.075 0.925 8 O -0.251 6.251 9 C -0.035 4.035 10 C -0.158 4.158 11 C -0.167 4.167 12 C 0.051 3.949 13 C -0.530 4.530 14 H 0.093 0.907 15 C -0.182 4.182 16 N -0.465 5.465 17 Si 0.806 3.194 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.183 1.183 21 C -0.225 4.225 22 C -0.185 4.185 23 C -0.142 4.142 24 C -0.098 4.098 25 H 0.089 0.911 26 C -0.201 4.201 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.131 0.869 36 H 0.096 0.904 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.566 15.833 6.725 17.393 hybrid contribution 0.427 -1.002 -0.645 1.266 sum -2.139 14.831 6.080 16.171 Atomic orbital electron populations 1.21999 0.95061 1.01697 1.02276 1.21152 0.96300 0.99476 0.93234 0.89300 1.21531 1.00700 0.93324 0.98995 1.22085 1.01748 0.97009 0.97115 1.22432 0.98117 0.79515 0.96977 0.92478 1.85864 1.52345 1.18586 1.68290 1.18690 0.96004 0.89040 0.99769 1.20051 1.01789 0.90873 1.03053 1.20964 0.98961 0.98690 0.98068 1.17945 0.92996 0.92316 0.91637 1.19719 0.98950 1.02530 1.31783 0.90703 1.26739 0.96112 1.01365 0.94032 1.69870 1.11487 1.27409 1.37758 0.85156 0.78698 0.76987 0.78538 1.18740 1.19409 1.18268 1.20838 1.03584 0.92963 1.05137 1.20695 0.97696 0.99232 1.00852 1.21646 1.01863 0.95505 0.95172 1.21089 1.00271 0.92432 0.96047 0.91087 1.21841 1.01722 1.00478 0.96045 0.91267 0.92405 0.93389 0.90655 0.91756 0.93464 0.91293 0.87410 0.86936 0.90351 0.87789 0.85770 0.90871 0.91928 0.92693 0.91201 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.15 71.98 0.59 -1.99 16 2 C -0.08 -1.43 2.72 -10.79 -0.03 -1.46 16 3 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 4 C -0.11 -2.26 5.45 30.59 0.17 -2.09 16 5 C -0.14 -4.04 4.87 30.59 0.15 -3.89 16 6 C 0.09 2.70 2.12 30.59 0.06 2.77 16 7 H 0.06 1.86 6.37 -2.39 -0.02 1.85 16 8 O -0.33 -13.80 9.79 -89.96 -0.88 -14.68 16 9 C 0.01 0.42 6.61 22.79 0.15 0.57 16 10 C -0.14 -7.01 9.92 22.11 0.22 -6.79 16 11 C -0.15 -8.12 8.62 22.48 0.19 -7.92 16 12 C 0.05 2.97 5.57 -21.28 -0.12 2.85 16 13 C -0.50 -27.66 9.05 23.40 0.21 -27.45 16 14 H 0.07 3.98 7.88 -2.91 -0.02 3.96 16 15 C 0.03 1.57 5.22 85.24 0.44 2.01 16 16 N -0.84 -45.18 10.81 21.82 0.24 -44.94 16 17 Si 0.99 39.24 29.58 68.60 2.03 41.27 16 18 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 19 H -0.27 -10.22 7.11 99.48 0.71 -9.52 16 20 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 21 C -0.21 -10.41 9.74 22.49 0.22 -10.19 16 22 C -0.17 -7.61 8.11 22.11 0.18 -7.43 16 23 C -0.10 -2.58 4.58 30.59 0.14 -2.44 16 24 C -0.08 -1.47 2.49 -10.79 -0.03 -1.50 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 C -0.14 -2.08 8.84 71.99 0.64 -1.45 16 27 H 0.07 0.97 6.43 -2.39 -0.02 0.95 16 28 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.05 0.97 4.81 -2.38 -0.01 0.96 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.05 1.56 6.76 -2.39 -0.02 1.55 16 33 H 0.07 1.98 6.43 -2.38 -0.02 1.96 16 34 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 35 H 0.11 6.43 6.12 -2.91 -0.02 6.41 16 36 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 37 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 38 H 0.12 4.89 5.35 -2.91 -0.02 4.88 16 39 H 0.07 1.80 6.43 -2.38 -0.02 1.79 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 41 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 Total: -1.00 -61.04 326.12 5.56 -55.48 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.99 Total: 29.28 kcal Atomic # 6 Polarization: -69.59 SS G_CDS: 3.19 Total: -66.40 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.24 Total: -44.94 kcal Atomic # 8 Polarization: -13.80 SS G_CDS: -0.88 Total: -14.68 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -61.04 5.56 -55.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085025814.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.970 kcal (2) G-P(sol) polarization free energy of solvation -61.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds