Wall clock time and date at job start Mon Mar 30 2020 03:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.46842 * 111.00006 * 45.79214 * 11 10 9 13 13 C 1.53041 * 109.52182 * 185.83625 * 12 11 10 14 14 C 1.53117 * 109.27666 * 300.81975 * 13 12 11 15 15 C 1.53120 * 109.16040 * 57.65645 * 14 13 12 16 16 H 1.08995 * 109.50542 * 62.28709 * 15 14 13 17 17 N 1.46510 * 109.53419 * 182.38177 * 15 14 13 18 18 C 1.39675 * 119.99780 * 274.82236 * 17 15 14 19 19 C 1.38901 * 120.07867 * 359.72421 * 18 17 15 20 20 C 1.38102 * 119.92541 * 179.76960 * 19 18 17 21 21 C 1.38283 * 120.07430 * 0.50566 * 20 19 18 22 22 C 1.38289 * 120.14996 * 359.74962 * 21 20 19 23 23 C 1.38105 * 120.07287 * 359.97438 * 22 21 20 24 24 C 1.46850 * 110.99680 * 170.00177 * 11 10 9 25 25 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 27 27 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 28 28 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 29 29 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 30 30 H 1.08997 * 109.46253 * 305.85236 * 12 11 10 31 31 H 1.08999 * 109.46071 * 65.82264 * 12 11 10 32 32 H 1.09006 * 109.50144 * 180.88125 * 13 12 11 33 33 H 1.09000 * 109.53767 * 60.78021 * 13 12 11 34 34 H 1.09003 * 109.52798 * 297.74644 * 14 13 12 35 35 H 1.09001 * 109.57403 * 177.58969 * 14 13 12 36 36 H 0.97004 * 119.99639 * 94.82348 * 17 15 14 37 37 H 1.08006 * 120.03728 * 0.02562 * 19 18 17 38 38 H 1.08001 * 119.96297 * 180.25240 * 20 19 18 39 39 H 1.08001 * 119.92713 * 179.76533 * 21 20 19 40 40 H 1.07998 * 119.96349 * 179.97438 * 22 21 20 41 41 H 1.07991 * 120.03549 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.45996 * 294.17720 * 24 11 10 43 43 H 1.08998 * 109.46346 * 54.14090 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6365 -0.0022 12 6 6.0175 -1.6802 0.9797 13 6 7.5403 -1.6007 0.8498 14 6 8.1411 -2.9888 1.0881 15 6 7.5397 -3.9759 0.0838 16 1 7.8021 -3.6700 -0.9289 17 7 8.0664 -5.3186 0.3412 18 6 9.2864 -5.7088 -0.2159 19 6 9.9988 -4.8271 -1.0188 20 6 11.2070 -5.2145 -1.5641 21 6 11.7027 -6.4822 -1.3201 22 6 10.9935 -7.3643 -0.5256 23 6 9.7873 -6.9814 0.0275 24 6 6.0170 -3.9866 0.2359 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6800 -0.8912 28 1 3.6585 -3.1501 0.8892 29 1 3.6578 -3.1506 -0.8907 30 1 5.5855 -0.6964 0.7965 31 1 5.7555 -2.0104 1.9849 32 1 7.9327 -0.9025 1.5893 33 1 7.8034 -1.2572 -0.1506 34 1 7.9119 -3.3159 2.1023 35 1 9.2221 -2.9467 0.9545 36 1 7.5678 -5.9365 0.8984 37 1 9.6102 -3.8383 -1.2130 38 1 11.7634 -4.5281 -2.1851 39 1 12.6460 -6.7840 -1.7509 40 1 11.3832 -8.3538 -0.3374 41 1 9.2338 -7.6708 0.6475 42 1 5.7550 -4.3058 1.2446 43 1 5.5845 -4.6778 -0.4874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000155005163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:03 Heat of formation + Delta-G solvation = 24.237510 kcal Electronic energy + Delta-G solvation = -20758.724637 eV Core-core repulsion = 17803.020548 eV Total energy + Delta-G solvation = -2955.704089 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.87412 -38.65064 -35.75269 -33.60718 -32.39048 -31.02922 -30.69880 -29.60826 -27.69566 -25.38552 -23.51194 -22.89256 -22.36382 -21.50564 -20.01401 -19.48571 -17.60251 -17.02392 -16.30487 -15.83642 -15.10606 -14.78273 -14.56559 -14.23409 -14.16444 -14.00495 -13.73168 -13.44494 -13.12694 -12.98179 -12.83930 -12.58832 -12.29805 -11.59833 -11.51810 -11.40043 -11.09587 -10.97691 -10.92965 -10.71263 -10.43281 -10.16631 -10.02369 -9.79099 -9.75971 -9.17899 -9.01631 -8.56689 -7.92529 -7.49400 -6.07821 -4.06394 1.34746 1.54236 3.22601 3.29307 3.36493 3.38873 3.82241 4.35129 4.42157 4.74811 4.80779 4.86502 4.89918 5.06122 5.11747 5.24506 5.26447 5.32486 5.37794 5.50160 5.60187 5.62873 5.74446 5.78692 5.87351 5.92332 5.97812 6.01402 6.13943 6.22739 6.24062 6.31934 6.39428 6.43198 6.55020 6.67648 6.77610 7.07031 7.23698 7.29576 7.49339 7.52780 7.64950 7.80053 8.49038 8.96013 9.54141 11.05532 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.040543 B = 0.003203 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.455709 B = 8740.605438 C = 9041.640236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.068 3.932 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.014 4.014 10 C 0.072 3.928 11 N -0.537 5.537 12 C 0.046 3.954 13 C -0.115 4.115 14 C -0.132 4.132 15 C 0.154 3.846 16 H 0.088 0.912 17 N -0.742 5.742 18 C 0.224 3.776 19 C -0.198 4.198 20 C -0.073 4.073 21 C -0.187 4.187 22 C -0.074 4.074 23 C -0.201 4.201 24 C 0.052 3.948 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.021 0.979 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.030 0.970 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.397 0.603 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.032 0.968 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.321 -10.710 0.812 24.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.134 4.134 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.055 4.055 11 N -0.262 5.262 12 C -0.082 4.082 13 C -0.154 4.154 14 C -0.171 4.171 15 C 0.049 3.951 16 H 0.106 0.894 17 N -0.369 5.369 18 C 0.120 3.880 19 C -0.221 4.221 20 C -0.092 4.092 21 C -0.207 4.207 22 C -0.093 4.093 23 C -0.224 4.224 24 C -0.078 4.078 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.108 0.892 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.231 0.769 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.050 0.950 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 22.233 -10.249 0.300 24.483 hybrid contribution -0.220 0.352 1.059 1.138 sum 22.012 -9.896 1.359 24.173 Atomic orbital electron populations 1.69911 1.06319 1.26954 1.50976 1.25003 0.94727 0.99184 0.94465 0.86753 0.80236 0.83511 0.78612 1.20158 1.21444 1.19058 1.21059 0.89313 0.94550 1.51134 0.91089 1.19718 0.96889 0.91718 0.96792 1.22129 0.82960 1.00436 0.99941 1.61995 1.09954 1.04887 1.49377 1.22252 0.94206 0.98359 0.93370 1.21590 0.95378 0.96035 1.02381 1.22058 1.00150 0.95498 0.99416 1.20932 0.93102 0.81494 0.99598 0.89417 1.44782 1.20916 1.15453 1.55788 1.17840 0.85879 0.92738 0.91551 1.20751 0.97299 1.00498 1.03550 1.20903 0.94824 0.95915 0.97510 1.20865 1.01358 0.94859 1.03635 1.20839 0.93900 0.98851 0.95694 1.20580 0.98990 0.95648 1.07192 1.22189 0.93339 0.92356 0.99872 0.92680 0.96297 0.96049 0.95488 0.91196 0.89165 0.95187 0.91532 0.91068 0.92179 0.91809 0.76868 0.85928 0.86410 0.86775 0.86500 0.86521 0.94978 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.76 9.66 -34.44 -0.33 -15.10 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.32 3.29 -27.88 -0.09 -0.41 16 10 C 0.07 1.43 5.21 -3.82 -0.02 1.41 16 11 N -0.54 -8.88 4.81 -234.67 -1.13 -10.01 16 12 C 0.05 0.72 4.85 -3.83 -0.02 0.70 16 13 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 14 C -0.13 -1.50 5.55 -26.61 -0.15 -1.65 16 15 C 0.15 1.80 2.31 -67.85 -0.16 1.65 16 16 H 0.09 1.10 6.47 -51.93 -0.34 0.77 16 17 N -0.74 -7.79 5.25 -52.09 -0.27 -8.06 16 18 C 0.22 2.47 6.64 -83.79 -0.56 1.91 16 19 C -0.20 -2.19 8.90 -39.39 -0.35 -2.54 16 20 C -0.07 -0.72 10.04 -39.61 -0.40 -1.12 16 21 C -0.19 -1.77 10.04 -39.55 -0.40 -2.16 16 22 C -0.07 -0.70 10.04 -39.61 -0.40 -1.09 16 23 C -0.20 -2.03 9.90 -39.38 -0.39 -2.42 16 24 C 0.05 0.70 4.90 -3.84 -0.02 0.68 16 25 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 26 H 0.02 0.44 5.27 -51.93 -0.27 0.17 16 27 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 28 H 0.03 0.54 8.08 -51.93 -0.42 0.12 16 29 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 30 H 0.09 1.57 5.81 -51.93 -0.30 1.27 16 31 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.70 7.76 -51.93 -0.40 0.29 16 36 H 0.40 3.68 8.62 -40.82 -0.35 3.33 16 37 H 0.12 1.32 6.13 -52.48 -0.32 1.00 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.11 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 42 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 1.04 8.12 -51.93 -0.42 0.62 16 LS Contribution 336.34 15.07 5.07 5.07 Total: -1.00 -30.14 336.34 -10.80 -40.94 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.04 Total: 2.01 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -3.54 Total: -19.88 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: -0.63 Total: -45.04 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.14 -10.80 -40.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155005163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.175 kcal (2) G-P(sol) polarization free energy of solvation -30.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds