Wall clock time and date at job start Mon Mar 30 2020 03:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99867 * 2 1 4 4 H 1.48506 * 109.47310 * 270.00005 * 3 2 1 5 5 H 1.48491 * 109.47296 * 30.00489 * 3 2 1 6 6 H 1.48502 * 109.46905 * 150.00533 * 3 2 1 7 7 C 1.37874 * 120.00302 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99766 * 359.97438 * 7 2 1 9 9 C 1.50699 * 120.00270 * 179.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.46626 * 179.97438 * 10 9 7 12 12 C 1.46842 * 111.00006 * 45.79214 * 11 10 9 13 13 C 1.53041 * 109.52182 * 185.83625 * 12 11 10 14 14 C 1.53117 * 109.27666 * 300.81975 * 13 12 11 15 15 C 1.53120 * 109.16040 * 57.65645 * 14 13 12 16 16 H 1.08995 * 109.50542 * 62.28709 * 15 14 13 17 17 N 1.46510 * 109.53419 * 182.38177 * 15 14 13 18 18 C 1.39675 * 119.99780 * 274.82236 * 17 15 14 19 19 C 1.38901 * 120.07867 * 359.72421 * 18 17 15 20 20 C 1.38102 * 119.92541 * 179.76960 * 19 18 17 21 21 C 1.38283 * 120.07430 * 0.50566 * 20 19 18 22 22 C 1.38289 * 120.14996 * 359.74962 * 21 20 19 23 23 C 1.38105 * 120.07287 * 359.97438 * 22 21 20 24 24 C 1.46850 * 110.99680 * 170.00177 * 11 10 9 25 25 H 0.97002 * 119.99998 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47247 * 59.99949 * 9 7 2 27 27 H 1.09001 * 109.47358 * 299.99375 * 9 7 2 28 28 H 1.08993 * 109.46955 * 300.00219 * 10 9 7 29 29 H 1.09000 * 109.47050 * 60.00048 * 10 9 7 30 30 H 1.08997 * 109.46253 * 305.85236 * 12 11 10 31 31 H 1.08999 * 109.46071 * 65.82264 * 12 11 10 32 32 H 1.09006 * 109.50144 * 180.88125 * 13 12 11 33 33 H 1.09000 * 109.53767 * 60.78021 * 13 12 11 34 34 H 1.09003 * 109.52798 * 297.74644 * 14 13 12 35 35 H 1.09001 * 109.57403 * 177.58969 * 14 13 12 36 36 H 0.97004 * 119.99639 * 94.82348 * 17 15 14 37 37 H 1.08006 * 120.03728 * 0.02562 * 19 18 17 38 38 H 1.08001 * 119.96297 * 180.25240 * 20 19 18 39 39 H 1.08001 * 119.92713 * 179.76533 * 21 20 19 40 40 H 1.07998 * 119.96349 * 179.97438 * 22 21 20 41 41 H 1.07991 * 120.03549 * 179.97438 * 23 22 21 42 42 H 1.08999 * 109.45996 * 294.17720 * 24 11 10 43 43 H 1.08998 * 109.46346 * 54.14090 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 7 5.4905 -2.6365 -0.0022 12 6 6.0175 -1.6802 0.9797 13 6 7.5403 -1.6007 0.8498 14 6 8.1411 -2.9888 1.0881 15 6 7.5397 -3.9759 0.0838 16 1 7.8021 -3.6700 -0.9289 17 7 8.0664 -5.3186 0.3412 18 6 9.2864 -5.7088 -0.2159 19 6 9.9988 -4.8271 -1.0188 20 6 11.2070 -5.2145 -1.5641 21 6 11.7027 -6.4822 -1.3201 22 6 10.9935 -7.3643 -0.5256 23 6 9.7873 -6.9814 0.0275 24 6 6.0170 -3.9866 0.2359 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6803 0.8888 27 1 3.8746 -0.6800 -0.8912 28 1 3.6585 -3.1501 0.8892 29 1 3.6578 -3.1506 -0.8907 30 1 5.5855 -0.6964 0.7965 31 1 5.7555 -2.0104 1.9849 32 1 7.9327 -0.9025 1.5893 33 1 7.8034 -1.2572 -0.1506 34 1 7.9119 -3.3159 2.1023 35 1 9.2221 -2.9467 0.9545 36 1 7.5678 -5.9365 0.8984 37 1 9.6102 -3.8383 -1.2130 38 1 11.7634 -4.5281 -2.1851 39 1 12.6460 -6.7840 -1.7509 40 1 11.3832 -8.3538 -0.3374 41 1 9.2338 -7.6708 0.6475 42 1 5.7550 -4.3058 1.2446 43 1 5.5845 -4.6778 -0.4874 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000155005163.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:02 Heat of formation + Delta-G solvation = 5.958493 kcal Electronic energy + Delta-G solvation = -20759.517275 eV Core-core repulsion = 17803.020548 eV Total energy + Delta-G solvation = -2956.496727 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.80114 -39.65413 -36.86707 -35.22007 -33.98540 -31.99948 -31.74479 -31.01628 -28.60539 -27.02629 -24.62456 -24.21149 -23.23749 -22.52511 -21.31220 -20.72288 -19.09808 -18.38100 -17.25049 -16.82181 -16.42898 -16.16385 -15.86458 -15.58029 -15.19674 -15.10293 -14.72679 -14.66603 -14.37045 -14.27095 -13.98562 -13.83188 -13.42428 -13.21543 -12.89914 -12.49802 -12.21697 -12.09993 -12.05189 -11.90138 -11.79684 -11.72070 -11.60945 -11.42315 -11.13075 -10.82543 -10.76854 -9.75339 -9.27909 -8.31317 -8.28365 -6.36024 0.61026 0.79345 1.36413 1.37393 1.49248 2.32296 2.35135 3.04220 3.07142 3.13340 3.74531 3.85512 4.00388 4.10667 4.16614 4.19306 4.29635 4.40672 4.44952 4.48882 4.55847 4.59948 4.70266 4.74057 4.78378 4.88514 4.88756 4.95487 4.98436 5.07741 5.17805 5.23358 5.26658 5.37846 5.46316 5.48555 5.60536 5.68975 5.82355 6.02460 6.07469 6.17396 6.28755 6.48390 6.71818 6.86761 7.28706 8.85441 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.040543 B = 0.003203 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.455709 B = 8740.605438 C = 9041.640236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.244 1.244 7 C -0.534 4.534 8 H 0.031 0.969 9 C -0.005 4.005 10 C 0.083 3.917 11 N -0.540 5.540 12 C 0.043 3.957 13 C -0.108 4.108 14 C -0.124 4.124 15 C 0.166 3.834 16 H 0.081 0.919 17 N -0.739 5.739 18 C 0.209 3.791 19 C -0.215 4.215 20 C -0.081 4.081 21 C -0.193 4.193 22 C -0.080 4.080 23 C -0.210 4.210 24 C 0.054 3.946 25 H 0.267 0.733 26 H 0.026 0.974 27 H 0.022 0.978 28 H 0.019 0.981 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.403 0.597 37 H 0.120 0.880 38 H 0.134 0.866 39 H 0.133 0.867 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.036 0.964 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.358 -10.556 1.011 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.049 0.951 9 C -0.043 4.043 10 C -0.044 4.044 11 N -0.265 5.265 12 C -0.085 4.085 13 C -0.146 4.146 14 C -0.163 4.163 15 C 0.060 3.940 16 H 0.099 0.901 17 N -0.368 5.368 18 C 0.105 3.895 19 C -0.237 4.237 20 C -0.100 4.100 21 C -0.213 4.213 22 C -0.098 4.098 23 C -0.233 4.233 24 C -0.075 4.075 25 H 0.076 0.924 26 H 0.045 0.955 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.238 0.762 37 H 0.138 0.862 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.157 0.843 41 H 0.147 0.853 42 H 0.054 0.946 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 25.300 -10.124 0.502 27.255 hybrid contribution -1.179 0.177 0.978 1.541 sum 24.121 -9.947 1.479 26.134 Atomic orbital electron populations 1.70066 1.08343 1.28250 1.52476 1.26001 0.95613 1.03566 0.93960 0.85631 0.79537 0.78046 0.79271 1.19196 1.20991 1.16728 1.21408 0.91945 0.93196 1.50739 0.95067 1.19585 0.93589 0.94172 0.96912 1.21821 0.85471 0.97906 0.99245 1.61941 1.07517 1.06810 1.50186 1.22298 0.96382 0.96957 0.92836 1.21544 0.92818 0.97130 1.03098 1.21986 1.00514 0.94640 0.99177 1.20699 0.91458 0.82407 0.99427 0.90138 1.44642 1.21044 1.15048 1.56104 1.18005 0.86059 0.93325 0.92089 1.20880 0.98004 1.00631 1.04221 1.21175 0.94661 0.96614 0.97557 1.21188 1.02087 0.94653 1.03330 1.21174 0.93594 0.99891 0.95178 1.20819 0.99475 0.95544 1.07414 1.22211 0.94737 0.90579 0.99990 0.92424 0.95545 0.95965 0.96292 0.92006 0.90963 0.95432 0.89743 0.90946 0.92127 0.90873 0.76215 0.86167 0.84832 0.84862 0.84344 0.85327 0.94622 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 2 C 0.01 0.32 5.47 84.65 0.46 0.79 16 3 Si 0.95 44.21 27.47 68.60 1.88 46.09 16 4 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 5 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 6 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.53 -31.01 9.66 25.60 0.25 -30.76 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.97 16 9 C -0.01 -0.24 3.29 29.85 0.10 -0.14 16 10 C 0.08 3.32 5.21 86.31 0.45 3.77 16 11 N -0.54 -17.38 4.81 -896.37 -4.31 -21.69 16 12 C 0.04 1.27 4.85 86.33 0.42 1.69 16 13 C -0.11 -2.41 6.09 30.65 0.19 -2.22 16 14 C -0.12 -2.54 5.55 30.67 0.17 -2.37 16 15 C 0.17 3.63 2.31 45.04 0.10 3.73 16 16 H 0.08 1.91 6.47 -2.39 -0.02 1.90 16 17 N -0.74 -14.42 5.25 -318.71 -1.67 -16.09 16 18 C 0.21 4.28 6.64 38.21 0.25 4.53 16 19 C -0.21 -4.41 8.90 22.40 0.20 -4.22 16 20 C -0.08 -1.47 10.04 22.25 0.22 -1.24 16 21 C -0.19 -3.19 10.04 22.29 0.22 -2.96 16 22 C -0.08 -1.31 10.04 22.25 0.22 -1.09 16 23 C -0.21 -3.84 9.90 22.40 0.22 -3.62 16 24 C 0.05 1.40 4.90 86.32 0.42 1.82 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H 0.03 1.20 5.27 -2.39 -0.01 1.19 16 27 H 0.02 1.03 7.57 -2.39 -0.02 1.02 16 28 H 0.02 0.77 8.08 -2.39 -0.02 0.75 16 29 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 30 H 0.07 2.40 5.81 -2.39 -0.01 2.39 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 33 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.07 1.41 7.76 -2.39 -0.02 1.39 16 36 H 0.40 6.86 8.62 -92.71 -0.80 6.06 16 37 H 0.12 2.44 6.13 -2.91 -0.02 2.42 16 38 H 0.13 1.86 8.06 -2.91 -0.02 1.84 16 39 H 0.13 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.13 1.94 8.06 -2.92 -0.02 1.92 16 42 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 Total: -1.00 -65.53 336.34 0.23 -65.29 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: 0.13 Total: 18.32 kcal Atomic # 6 Polarization: -36.21 SS G_CDS: 3.91 Total: -32.30 kcal Atomic # 7 Polarization: -91.73 SS G_CDS: -5.68 Total: -97.41 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 1.88 Total: 46.09 kcal Total: -65.53 0.23 -65.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000155005163.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.253 kcal (2) G-P(sol) polarization free energy of solvation -65.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds