Wall clock time and date at job start Mon Mar 30 2020 01:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46685 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46910 * 120.00333 * 12 10 8 15 15 H 1.48502 * 109.47120 * 240.00671 * 12 10 8 16 16 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 17 17 N 1.30812 * 126.24616 * 285.02326 * 16 2 1 18 18 N 1.28675 * 110.29011 * 179.97438 * 17 16 2 19 19 C 1.32309 * 109.48761 * 359.97438 * 18 17 16 20 20 C 1.40814 * 133.47266 * 180.02562 * 19 18 17 21 21 C 1.36020 * 119.23082 * 179.97438 * 20 19 18 22 22 C 1.40551 * 119.74391 * 0.02562 * 21 20 19 23 23 C 1.34947 * 120.36714 * 359.97438 * 22 21 20 24 24 N 1.36066 * 126.24877 * 104.71574 * 16 2 1 25 25 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 31 31 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 32 32 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 33 33 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 34 34 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 35 35 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 36 36 H 1.08001 * 120.38465 * 0.02562 * 20 19 18 37 37 H 1.07994 * 120.12892 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.81563 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.74909 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 2.6622 0.4205 4.7691 8 6 3.1677 -0.3237 5.9781 9 1 3.4173 -1.3717 5.9017 10 6 3.3124 0.3336 7.1815 11 7 3.0089 1.6098 7.2744 12 14 3.9397 -0.5888 8.6800 13 1 4.2081 -2.0028 8.3142 14 1 5.1937 0.0442 9.1617 15 1 2.9162 -0.5408 9.7550 16 6 2.0323 -0.7104 -1.2304 17 7 2.0323 -2.0030 -1.4314 18 7 2.5306 -2.2751 -2.5861 19 6 2.8796 -1.1519 -3.1919 20 6 3.4592 -0.8656 -4.4429 21 6 3.7004 0.4293 -4.7825 22 6 3.3701 1.4588 -3.8845 23 6 2.8152 1.1693 -2.6890 24 7 2.5633 -0.1242 -2.3375 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.9173 -1.1205 1.0288 29 1 2.7589 1.0462 2.1182 30 1 1.0871 0.6164 2.5525 31 1 1.9201 -1.3565 3.8030 32 1 3.5917 -0.9261 3.3683 33 1 3.3384 1.2440 4.5400 34 1 1.6669 0.8143 4.9752 35 1 3.1104 2.0722 8.1210 36 1 3.7085 -1.6648 -5.1252 37 1 4.1448 0.6654 -5.7381 38 1 3.5608 2.4874 -4.1531 39 1 2.5650 1.9683 -2.0067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182677035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:38 Heat of formation + Delta-G solvation = 96.398600 kcal Electronic energy + Delta-G solvation = -20049.290663 eV Core-core repulsion = 16993.175370 eV Total energy + Delta-G solvation = -3056.115293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.77806 -38.53492 -37.23836 -34.52408 -33.69832 -32.10311 -31.33381 -29.75557 -28.84316 -26.12505 -24.56441 -24.10992 -23.45710 -22.35812 -20.62546 -20.15037 -18.35314 -17.44996 -16.78512 -16.44993 -16.21370 -15.79469 -15.35164 -14.79950 -14.56898 -14.20063 -13.58166 -13.02395 -12.94859 -12.76051 -12.51240 -12.22959 -12.07916 -11.88619 -11.77129 -11.56465 -11.41375 -11.26885 -10.86174 -10.65158 -10.57357 -10.47698 -9.85395 -9.70212 -9.35538 -9.04720 -8.39109 -8.33931 -8.30211 -5.98900 -4.00537 0.24633 0.76840 1.96472 2.48227 3.00113 3.32756 3.40149 3.45448 3.70498 3.98582 4.09102 4.14963 4.37608 4.48151 4.50556 4.65754 4.84880 5.11281 5.13764 5.35838 5.37289 5.49294 5.58426 5.66674 5.70600 5.73708 5.78275 5.84647 5.96776 6.18967 6.30318 6.53293 6.70198 6.72988 7.12507 7.22523 7.49616 7.69447 7.83302 8.01594 8.37701 8.45264 9.06882 9.63634 11.12619 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.002898 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.359446 B = 9660.543338 C = 9756.156301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.180 3.820 3 H 0.056 0.944 4 N -0.671 5.671 5 C 0.059 3.941 6 C -0.107 4.107 7 C 0.023 3.977 8 C -0.517 4.517 9 H 0.056 0.944 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.284 1.284 16 C 0.143 3.857 17 N -0.222 5.222 18 N -0.290 5.290 19 C 0.186 3.814 20 C -0.077 4.077 21 C -0.091 4.091 22 C -0.139 4.139 23 C 0.067 3.933 24 N -0.389 5.389 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.345 0.655 29 H 0.025 0.975 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.013 0.987 34 H 0.017 0.983 35 H 0.259 0.741 36 H 0.156 0.844 37 H 0.147 0.853 38 H 0.156 0.844 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 3.027 -26.227 26.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.067 3.933 3 H 0.074 0.926 4 N -0.303 5.303 5 C -0.069 4.069 6 C -0.145 4.145 7 C -0.015 4.015 8 C -0.556 4.556 9 H 0.074 0.926 10 C -0.145 4.145 11 N -0.537 5.537 12 Si 0.719 3.281 13 H -0.197 1.197 14 H -0.211 1.211 15 H -0.210 1.210 16 C -0.119 4.119 17 N -0.061 5.061 18 N -0.136 5.136 19 C -0.063 4.063 20 C -0.098 4.098 21 C -0.116 4.116 22 C -0.161 4.161 23 C -0.056 4.056 24 N -0.070 5.070 25 H 0.093 0.907 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.164 0.836 29 H 0.043 0.957 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.031 0.969 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.174 0.826 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -1.486 1.307 -25.537 25.613 hybrid contribution 1.396 1.583 0.380 2.145 sum -0.090 2.890 -25.157 25.322 Atomic orbital electron populations 1.21804 0.92169 1.03800 1.01643 1.19838 0.96754 0.93588 0.83107 0.92610 1.60639 1.34194 1.33021 1.02493 1.22269 1.00785 0.93509 0.90379 1.21626 0.99489 0.99585 0.93797 1.19066 0.97127 0.94152 0.91154 1.21304 1.43270 0.96477 0.94518 0.92550 1.25028 0.95651 0.94886 0.98981 1.69973 1.49123 1.09005 1.25619 0.86540 0.78466 0.80124 0.82930 1.19668 1.21085 1.20993 1.25087 1.04982 0.90568 0.91312 1.74317 1.13055 1.10012 1.08699 1.75053 1.16805 1.19868 1.01855 1.22410 1.03992 0.84933 0.94967 1.20302 0.99026 0.98245 0.92255 1.21189 0.98476 0.91619 1.00281 1.20950 1.00920 1.01423 0.92795 1.21720 1.00624 0.84473 0.98772 1.43787 1.40532 1.07878 1.14779 0.90695 0.90832 0.93031 0.83632 0.95715 0.90945 0.92170 0.93594 0.96874 0.96497 0.93116 0.82590 0.83503 0.82658 0.81392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.40 37.16 0.35 -1.24 16 2 C 0.18 2.28 3.09 -68.86 -0.21 2.07 16 3 H 0.06 0.62 7.37 -51.93 -0.38 0.23 16 4 N -0.67 -10.27 6.30 -107.95 -0.68 -10.95 16 5 C 0.06 0.99 5.48 -3.82 -0.02 0.97 16 6 C -0.11 -2.23 5.41 -26.73 -0.14 -2.38 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 9 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 10 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 11 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 12 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 C 0.14 1.96 6.63 -154.22 -1.02 0.94 16 17 N -0.22 -3.64 12.18 32.94 0.40 -3.23 16 18 N -0.29 -4.56 12.31 31.14 0.38 -4.18 16 19 C 0.19 2.30 7.92 -156.05 -1.24 1.06 16 20 C -0.08 -0.62 10.11 -39.40 -0.40 -1.02 16 21 C -0.09 -0.49 10.07 -39.51 -0.40 -0.88 16 22 C -0.14 -0.72 9.98 -39.88 -0.40 -1.12 16 23 C 0.07 0.50 10.80 -16.70 -0.18 0.32 16 24 N -0.39 -4.46 2.95 -59.73 -0.18 -4.64 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.07 0.84 7.45 -51.93 -0.39 0.45 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.34 5.44 8.35 -39.29 -0.33 5.12 16 29 H 0.02 0.40 8.06 -51.93 -0.42 -0.01 16 30 H 0.07 1.20 7.44 -51.93 -0.39 0.82 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 36 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.15 0.31 8.06 -52.49 -0.42 -0.12 16 38 H 0.16 0.30 8.06 -52.48 -0.42 -0.12 16 39 H 0.17 0.85 7.76 -52.49 -0.41 0.44 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -34.41 331.81 -9.22 -43.63 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -5.66 Total: -1.67 kcal Atomic # 6 Polarization: -10.30 SS G_CDS: -4.21 Total: -14.51 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.66 Total: -49.38 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.41 -9.22 -43.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182677035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.031 kcal (2) G-P(sol) polarization free energy of solvation -34.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds