Wall clock time and date at job start Mon Mar 30 2020 01:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47221 * 2 1 4 4 N 1.46905 * 109.47094 * 119.99847 * 2 1 3 5 5 C 1.46901 * 110.99870 * 274.99984 * 4 2 1 6 6 C 1.53004 * 109.46916 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.46700 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46820 * 179.97438 * 7 6 5 9 9 H 1.08000 * 120.00070 * 0.02562 * 8 7 6 10 10 C 1.37878 * 120.00019 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00228 * 0.02562 * 10 8 7 12 12 Si 1.86807 * 120.00068 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.46685 * 0.02562 * 12 10 8 14 14 H 1.48500 * 109.46910 * 120.00333 * 12 10 8 15 15 H 1.48502 * 109.47120 * 240.00671 * 12 10 8 16 16 C 1.50696 * 109.47017 * 239.99812 * 2 1 3 17 17 N 1.30812 * 126.24616 * 285.02326 * 16 2 1 18 18 N 1.28675 * 110.29011 * 179.97438 * 17 16 2 19 19 C 1.32309 * 109.48761 * 359.97438 * 18 17 16 20 20 C 1.40814 * 133.47266 * 180.02562 * 19 18 17 21 21 C 1.36020 * 119.23082 * 179.97438 * 20 19 18 22 22 C 1.40551 * 119.74391 * 0.02562 * 21 20 19 23 23 C 1.34947 * 120.36714 * 359.97438 * 22 21 20 24 24 N 1.36066 * 126.24877 * 104.71574 * 16 2 1 25 25 H 1.08997 * 109.47624 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47163 * 300.00582 * 1 2 3 27 27 H 1.08999 * 109.47123 * 59.99965 * 1 2 3 28 28 H 1.00901 * 110.99869 * 151.04696 * 4 2 1 29 29 H 1.09004 * 109.47031 * 299.99620 * 5 4 2 30 30 H 1.08995 * 109.47111 * 59.99900 * 5 4 2 31 31 H 1.08995 * 109.46615 * 299.99641 * 6 5 4 32 32 H 1.08996 * 109.46939 * 60.00272 * 6 5 4 33 33 H 1.08993 * 109.47740 * 299.99810 * 7 6 5 34 34 H 1.09005 * 109.47573 * 59.99976 * 7 6 5 35 35 H 0.97002 * 120.00555 * 179.97438 * 11 10 8 36 36 H 1.08001 * 120.38465 * 0.02562 * 20 19 18 37 37 H 1.07994 * 120.12892 * 179.97438 * 21 20 19 38 38 H 1.08004 * 119.81563 * 180.02562 * 22 21 20 39 39 H 1.08001 * 119.74909 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 2.0824 0.2227 2.3469 6 6 2.5962 -0.5328 3.5742 7 6 2.6622 0.4205 4.7691 8 6 3.1677 -0.3237 5.9781 9 1 3.4173 -1.3717 5.9017 10 6 3.3124 0.3336 7.1815 11 7 3.0089 1.6098 7.2744 12 14 3.9397 -0.5888 8.6800 13 1 4.2081 -2.0028 8.3142 14 1 5.1937 0.0442 9.1617 15 1 2.9162 -0.5408 9.7550 16 6 2.0323 -0.7104 -1.2304 17 7 2.0323 -2.0030 -1.4314 18 7 2.5306 -2.2751 -2.5861 19 6 2.8796 -1.1519 -3.1919 20 6 3.4592 -0.8656 -4.4429 21 6 3.7004 0.4293 -4.7825 22 6 3.3701 1.4588 -3.8845 23 6 2.8152 1.1693 -2.6890 24 7 2.5633 -0.1242 -2.3375 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.9173 -1.1205 1.0288 29 1 2.7589 1.0462 2.1182 30 1 1.0871 0.6164 2.5525 31 1 1.9201 -1.3565 3.8030 32 1 3.5917 -0.9261 3.3683 33 1 3.3384 1.2440 4.5400 34 1 1.6669 0.8143 4.9752 35 1 3.1104 2.0722 8.1210 36 1 3.7085 -1.6648 -5.1252 37 1 4.1448 0.6654 -5.7381 38 1 3.5608 2.4874 -4.1531 39 1 2.5650 1.9683 -2.0067 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182677035.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:37 Heat of formation + Delta-G solvation = 74.364927 kcal Electronic energy + Delta-G solvation = -20050.246115 eV Core-core repulsion = 16993.175370 eV Total energy + Delta-G solvation = -3057.070745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -44.61698 -39.23093 -38.42441 -35.97963 -34.93489 -33.74004 -32.11881 -31.12883 -29.74534 -27.87324 -25.34347 -25.20691 -24.25074 -23.88361 -22.00547 -21.43933 -19.15214 -18.48423 -18.14247 -17.65095 -17.22190 -16.61719 -16.54863 -16.12425 -15.81372 -15.47713 -14.92876 -14.44376 -13.85019 -13.69150 -13.50202 -13.48650 -13.45670 -13.16314 -12.89847 -12.78717 -12.55676 -12.50183 -12.33091 -12.27622 -12.09203 -11.64088 -11.50267 -11.39626 -11.12449 -10.60888 -10.55444 -9.51491 -9.12112 -8.20779 -6.30897 -0.31548 0.06093 1.20626 1.39256 1.39891 1.53415 1.59386 2.36039 2.40765 2.91394 3.01164 3.12452 3.31496 3.48867 3.74434 3.86370 4.06401 4.09927 4.12856 4.23199 4.38505 4.58528 4.66244 4.70169 4.74391 4.83617 4.94785 4.97500 5.01143 5.11474 5.15977 5.20820 5.27278 5.43731 5.52335 5.75214 5.83720 5.86297 5.97081 6.22626 6.27994 6.85606 7.38100 7.45346 8.91156 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.032689 B = 0.002898 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.359446 B = 9660.543338 C = 9756.156301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.184 3.816 3 H 0.080 0.920 4 N -0.679 5.679 5 C 0.074 3.926 6 C -0.094 4.094 7 C 0.028 3.972 8 C -0.544 4.544 9 H 0.055 0.945 10 C 0.001 3.999 11 N -0.931 5.931 12 Si 0.963 3.037 13 H -0.266 1.266 14 H -0.276 1.276 15 H -0.276 1.276 16 C 0.131 3.869 17 N -0.266 5.266 18 N -0.348 5.348 19 C 0.182 3.818 20 C -0.108 4.108 21 C -0.060 4.060 22 C -0.121 4.121 23 C 0.039 3.961 24 N -0.390 5.390 25 H 0.053 0.947 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.341 0.659 29 H 0.033 0.967 30 H 0.076 0.924 31 H 0.051 0.949 32 H 0.044 0.956 33 H -0.005 1.005 34 H -0.003 1.003 35 H 0.264 0.736 36 H 0.171 0.829 37 H 0.191 0.809 38 H 0.200 0.800 39 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 4.818 -28.040 28.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.072 3.928 3 H 0.098 0.902 4 N -0.311 5.311 5 C -0.054 4.054 6 C -0.132 4.132 7 C -0.010 4.010 8 C -0.582 4.582 9 H 0.073 0.927 10 C -0.197 4.197 11 N -0.572 5.572 12 Si 0.787 3.213 13 H -0.190 1.190 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.134 4.134 17 N -0.105 5.105 18 N -0.193 5.193 19 C -0.068 4.068 20 C -0.130 4.130 21 C -0.084 4.084 22 C -0.142 4.142 23 C -0.082 4.082 24 N -0.069 5.069 25 H 0.072 0.928 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.159 0.841 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.073 0.927 36 H 0.188 0.812 37 H 0.208 0.792 38 H 0.217 0.783 39 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -0.540 3.097 -27.370 27.549 hybrid contribution 1.160 1.184 0.760 1.823 sum 0.620 4.281 -26.610 26.959 Atomic orbital electron populations 1.21766 0.91613 1.02771 1.02755 1.19872 0.97055 0.94203 0.81681 0.90244 1.60541 1.34029 1.33202 1.03374 1.21968 1.00877 0.93176 0.89398 1.21378 0.99488 0.98481 0.93877 1.18947 0.95163 0.94303 0.92558 1.21729 1.43710 0.96760 0.95993 0.92684 1.25936 0.95686 0.95795 1.02255 1.70082 1.49875 1.10511 1.26712 0.85434 0.78097 0.78927 0.78813 1.18990 1.20186 1.20198 1.24982 1.05947 0.90187 0.92239 1.74147 1.14600 1.11969 1.09748 1.74893 1.19818 1.22084 1.02547 1.22999 1.03182 0.84484 0.96098 1.20691 1.00669 1.00373 0.91234 1.21802 0.95036 0.90168 1.01415 1.21606 0.97913 1.03488 0.91203 1.22475 1.01742 0.83374 1.00655 1.43865 1.40074 1.09105 1.13881 0.92808 0.90518 0.90991 0.84115 0.94878 0.90524 0.93063 0.93729 0.98688 0.98501 0.92715 0.81166 0.79165 0.78303 0.79052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.40 71.98 0.68 -2.34 16 2 C 0.18 4.59 3.09 44.17 0.14 4.73 16 3 H 0.08 1.60 7.37 -2.38 -0.02 1.59 16 4 N -0.68 -21.00 6.30 -495.43 -3.12 -24.12 16 5 C 0.07 2.50 5.48 86.30 0.47 2.97 16 6 C -0.09 -4.01 5.41 30.59 0.17 -3.84 16 7 C 0.03 1.48 4.97 29.85 0.15 1.63 16 8 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 9 H 0.05 3.15 7.74 -2.91 -0.02 3.12 16 10 C 0.00 0.06 5.46 84.65 0.46 0.52 16 11 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 12 Si 0.96 45.10 29.54 68.60 2.03 47.13 16 13 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 14 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C 0.13 3.63 6.63 137.71 0.91 4.54 16 17 N -0.27 -9.24 12.18 -49.68 -0.61 -9.84 16 18 N -0.35 -11.58 12.31 -55.40 -0.68 -12.26 16 19 C 0.18 4.49 7.92 134.06 1.06 5.55 16 20 C -0.11 -1.54 10.11 22.38 0.23 -1.32 16 21 C -0.06 -0.36 10.07 22.32 0.22 -0.14 16 22 C -0.12 -0.67 9.98 22.08 0.22 -0.45 16 23 C 0.04 0.47 10.80 83.23 0.90 1.37 16 24 N -0.39 -8.59 2.95 -342.88 -1.01 -9.61 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.08 1.70 7.45 -2.38 -0.02 1.68 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.34 11.05 8.35 -89.69 -0.75 10.30 16 29 H 0.03 1.06 8.06 -2.39 -0.02 1.04 16 30 H 0.08 2.52 7.44 -2.39 -0.02 2.50 16 31 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 32 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 33 H -0.01 -0.30 8.14 -2.39 -0.02 -0.31 16 34 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 35 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 36 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 37 H 0.19 -0.44 8.06 -2.91 -0.02 -0.46 16 38 H 0.20 -0.59 8.06 -2.91 -0.02 -0.61 16 39 H 0.19 1.24 7.76 -2.91 -0.02 1.22 16 Total: -1.00 -78.85 331.81 3.03 -75.83 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 0.30 Total: 7.69 kcal Atomic # 6 Polarization: -24.13 SS G_CDS: 5.84 Total: -18.29 kcal Atomic # 7 Polarization: -107.22 SS G_CDS: -5.13 Total: -112.36 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -78.85 3.03 -75.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182677035.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.191 kcal (2) G-P(sol) polarization free energy of solvation -78.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds