Wall clock time and date at job start Mon Mar 30 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35753 * 125.67803 * 2 1 4 4 C 1.35363 * 108.85099 * 179.73689 * 3 2 1 5 5 C 1.50699 * 126.07655 * 180.28378 * 4 3 2 6 6 N 1.46902 * 109.46833 * 89.99944 * 5 4 3 7 7 C 1.46894 * 111.00088 * 294.30021 * 6 5 4 8 8 C 1.53242 * 109.33767 * 172.74708 * 7 6 5 9 9 N 1.47077 * 108.52198 * 53.83508 * 8 7 6 10 10 C 1.36931 * 120.88246 * 128.83701 * 9 8 7 11 11 H 1.08006 * 119.99938 * 206.56408 * 10 9 8 12 12 C 1.38814 * 120.00291 * 26.56175 * 10 9 8 13 13 N 1.31623 * 119.99536 * 17.01732 * 12 10 9 14 14 Si 1.86798 * 120.00209 * 197.01659 * 12 10 9 15 15 H 1.48504 * 109.46824 * 89.99988 * 14 12 10 16 16 H 1.48499 * 109.46951 * 209.99912 * 14 12 10 17 17 H 1.48498 * 109.47113 * 330.00196 * 14 12 10 18 18 C 1.47080 * 118.23603 * 308.81285 * 9 8 7 19 19 C 1.46907 * 110.99785 * 169.99925 * 6 5 4 20 20 C 1.39964 * 107.85182 * 0.26604 * 4 3 2 21 21 C 1.37566 * 125.67892 * 180.19738 * 2 1 3 22 22 C 1.43203 * 126.22685 * 359.97438 * 21 2 1 23 23 N 3.55845 * 90.07514 * 180.19432 * 2 1 3 24 24 H 1.09000 * 109.46951 * 89.99425 * 1 2 3 25 25 H 1.08998 * 109.47226 * 209.99628 * 1 2 3 26 26 H 1.08996 * 109.47262 * 330.00300 * 1 2 3 27 27 H 1.08000 * 125.57863 * 0.02562 * 3 2 1 28 28 H 1.08997 * 109.47381 * 210.00026 * 5 4 3 29 29 H 1.09000 * 109.46947 * 330.00439 * 5 4 3 30 30 H 1.08990 * 109.49740 * 292.70695 * 7 6 5 31 31 H 1.09005 * 109.48897 * 52.79235 * 7 6 5 32 32 H 1.09004 * 109.62678 * 294.12002 * 8 7 6 33 33 H 1.08997 * 109.62792 * 173.54583 * 8 7 6 34 34 H 0.96998 * 119.99974 * 179.97438 * 13 12 10 35 35 H 1.09000 * 109.62887 * 291.47571 * 18 9 8 36 36 H 1.08997 * 109.78904 * 170.99039 * 18 9 8 37 37 H 1.08994 * 109.49626 * 307.21720 * 19 6 5 38 38 H 1.08999 * 109.48756 * 67.29550 * 19 6 5 39 39 H 1.08001 * 126.44551 * 179.97438 * 20 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2568 1.1027 0.0000 4 6 3.5525 0.7109 0.0059 5 6 4.7545 1.6198 0.0140 6 7 5.1378 1.9123 1.4016 7 6 4.0960 2.6927 2.0823 8 6 4.4475 2.8210 3.5683 9 7 5.8079 3.3684 3.6810 10 6 6.0657 4.4521 4.4774 11 1 6.8989 5.1015 4.2525 12 6 5.2561 4.7163 5.5736 13 7 4.4664 3.7771 6.0499 14 14 5.2873 6.4044 6.3727 15 1 4.2733 7.2764 5.7271 16 1 4.9784 6.2730 7.8193 17 1 6.6349 7.0057 6.2069 18 6 6.8842 2.7206 2.9162 19 6 6.4369 2.5962 1.4559 20 6 3.5775 -0.6885 0.0035 21 6 2.2674 -1.1174 -0.0038 22 6 1.8227 -2.4786 -0.0080 23 7 1.4697 -3.5584 -0.0121 24 1 -0.3633 0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.9098 2.1255 0.0004 28 1 5.5837 1.1302 -0.4966 29 1 4.5100 2.5499 -0.4992 30 1 4.0349 3.6852 1.6360 31 1 3.1361 2.1868 1.9779 32 1 4.4075 1.8392 4.0401 33 1 3.7408 3.4932 4.0550 34 1 3.9009 3.9615 6.8162 35 1 7.0786 1.7291 3.3253 36 1 7.7906 3.3235 2.9714 37 1 7.1747 2.0204 0.8972 38 1 6.3432 3.5900 1.0182 39 1 4.4577 -1.3145 0.0065 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191305974.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:23 Heat of formation + Delta-G solvation = 119.430753 kcal Electronic energy + Delta-G solvation = -20788.531781 eV Core-core repulsion = 17733.415238 eV Total energy + Delta-G solvation = -3055.116544 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.41774 -37.96176 -36.52292 -34.69355 -33.06133 -31.29186 -29.90177 -29.66428 -27.91133 -26.17687 -24.22731 -22.80757 -22.32085 -21.91515 -19.83732 -18.99175 -17.87740 -16.72591 -15.87084 -15.74216 -15.01868 -14.57305 -14.39244 -14.04451 -13.97171 -13.59746 -13.38850 -13.34553 -13.02360 -13.01412 -12.90020 -12.59919 -12.32533 -12.19209 -11.73223 -11.32151 -11.28690 -10.99950 -10.72692 -10.41696 -10.23313 -9.99775 -9.70281 -9.56606 -8.69076 -8.46612 -8.20819 -7.66939 -6.61289 -5.74105 -3.14965 1.34386 2.13773 2.63759 2.94848 3.39205 3.40630 3.46175 3.47570 3.82472 4.48559 4.52406 4.69696 4.85762 4.94233 5.12661 5.24679 5.31378 5.42721 5.52049 5.59728 5.81742 5.94314 6.00471 6.02436 6.21887 6.29533 6.33791 6.41997 6.61379 6.72085 6.77980 6.89489 7.01109 7.02116 7.32211 7.37058 7.71156 7.73652 7.79140 7.89215 8.47821 9.25792 9.89533 10.48342 11.34475 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025122 B = 0.004116 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.306063 B = 6801.332655 C = 7262.270432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.427 5.427 3 C 0.039 3.961 4 C -0.150 4.150 5 C 0.123 3.877 6 N -0.528 5.528 7 C 0.036 3.964 8 C 0.179 3.821 9 N -0.596 5.596 10 C -0.250 4.250 11 H 0.066 0.934 12 C 0.001 3.999 13 N -0.903 5.903 14 Si 0.901 3.099 15 H -0.289 1.289 16 H -0.292 1.292 17 H -0.279 1.279 18 C 0.149 3.851 19 C 0.045 3.955 20 C -0.086 4.086 21 C 0.033 3.967 22 C 0.289 3.711 23 N -0.424 5.424 24 H 0.077 0.923 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.171 0.829 28 H 0.076 0.924 29 H 0.033 0.967 30 H 0.021 0.979 31 H 0.063 0.937 32 H 0.025 0.975 33 H 0.085 0.915 34 H 0.253 0.747 35 H 0.025 0.975 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.674 -4.413 -14.677 16.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.102 5.102 3 C -0.096 4.096 4 C -0.156 4.156 5 C -0.005 4.005 6 N -0.253 5.253 7 C -0.093 4.093 8 C 0.053 3.947 9 N -0.319 5.319 10 C -0.380 4.380 11 H 0.083 0.917 12 C -0.198 4.198 13 N -0.548 5.548 14 Si 0.731 3.269 15 H -0.216 1.216 16 H -0.218 1.218 17 H -0.205 1.205 18 C 0.022 3.978 19 C -0.084 4.084 20 C -0.115 4.115 21 C -0.078 4.078 22 C -0.026 4.026 23 N -0.101 5.101 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.189 0.811 28 H 0.095 0.905 29 H 0.051 0.949 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -6.673 -6.518 -14.264 17.043 hybrid contribution -0.151 2.039 0.137 2.049 sum -6.824 -4.479 -14.127 16.316 Atomic orbital electron populations 1.22144 0.76586 1.04977 1.03580 1.43798 1.06228 1.04805 1.55345 1.21904 0.90084 0.91066 1.06588 1.19276 0.93500 0.93617 1.09234 1.20407 0.93845 0.95585 0.90653 1.61955 1.03196 1.47144 1.13025 1.22896 0.93771 0.93744 0.98871 1.20843 0.87270 0.97804 0.88805 1.44133 1.02532 1.33575 1.51693 1.19219 1.13821 1.00793 1.04140 0.91662 1.25010 1.00862 0.97719 0.96175 1.70042 1.29113 1.30799 1.24879 0.86301 0.77821 0.84367 0.78365 1.21583 1.21807 1.20487 1.20968 0.91660 0.96148 0.89041 1.22607 0.90389 0.95580 0.99843 1.21157 0.93539 0.94655 1.02156 1.15583 0.90159 0.80448 1.21637 1.24388 0.93776 0.91586 0.92822 1.81280 1.06331 1.11112 1.11405 0.90465 0.90004 0.88808 0.81148 0.90524 0.94913 0.96069 0.91901 0.95726 0.89643 0.93715 0.95712 0.92765 0.92000 0.95541 0.83353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.92 59.85 0.65 1.11 16 2 N -0.43 -4.34 3.17 -121.40 -0.38 -4.73 16 3 C 0.04 0.42 9.73 -16.84 -0.16 0.26 16 4 C -0.15 -1.84 5.00 -105.00 -0.52 -2.37 16 5 C 0.12 1.62 5.45 -4.98 -0.03 1.60 16 6 N -0.53 -9.00 4.62 -235.77 -1.09 -10.09 16 7 C 0.04 0.68 5.43 -3.70 -0.02 0.66 16 8 C 0.18 4.29 5.42 -3.60 -0.02 4.27 16 9 N -0.60 -15.06 3.04 -172.01 -0.52 -15.58 16 10 C -0.25 -6.87 9.63 -15.06 -0.15 -7.02 16 11 H 0.07 1.76 7.88 -52.48 -0.41 1.34 16 12 C 0.00 0.02 4.94 -17.43 -0.09 -0.07 16 13 N -0.90 -26.26 11.15 55.49 0.62 -25.64 16 14 Si 0.90 21.59 29.59 -169.99 -5.03 16.56 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.15 3.14 6.69 -3.60 -0.02 3.11 16 19 C 0.05 0.78 5.62 -3.70 -0.02 0.76 16 20 C -0.09 -1.03 10.79 -39.08 -0.42 -1.46 16 21 C 0.03 0.39 6.75 -83.51 -0.56 -0.17 16 22 C 0.29 3.63 15.21 -22.47 -0.34 3.28 16 23 N -0.42 -5.99 18.54 41.84 0.78 -5.21 16 24 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.56 7.80 -51.93 -0.40 0.15 16 26 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.17 1.49 8.06 -52.49 -0.42 1.07 16 28 H 0.08 0.91 7.97 -51.93 -0.41 0.50 16 29 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 1.07 5.92 -51.93 -0.31 0.76 16 32 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.09 2.27 6.12 -51.93 -0.32 1.95 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.05 1.10 7.96 -51.93 -0.41 0.68 16 37 H 0.06 0.91 7.99 -51.93 -0.41 0.49 16 38 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.15 1.62 8.06 -52.49 -0.42 1.19 16 LS Contribution 326.04 15.07 4.91 4.91 Total: -1.00 -31.74 326.04 -8.05 -39.79 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -5.62 Total: -3.98 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -1.71 Total: 3.98 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.60 Total: -61.25 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.74 -8.05 -39.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191305974.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.218 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds