Wall clock time and date at job start Mon Mar 30 2020 03:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47037 * 273.76322 * 3 2 1 5 5 H 1.48497 * 109.47044 * 33.76302 * 3 2 1 6 6 H 1.48500 * 109.46868 * 153.76576 * 3 2 1 7 7 C 1.37882 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99404 * 353.02141 * 7 2 1 9 9 C 1.50694 * 120.00073 * 173.30285 * 7 2 1 10 10 C 1.52995 * 115.55405 * 91.23462 * 9 7 2 11 11 N 1.46906 * 109.46658 * 55.69136 * 10 9 7 12 12 C 1.46903 * 110.99767 * 200.52688 * 11 10 9 13 13 C 1.52995 * 109.47264 * 76.05695 * 12 11 10 14 14 N 1.46901 * 109.47148 * 184.14974 * 13 12 11 15 15 C 1.46899 * 111.00177 * 76.56998 * 11 10 9 16 16 C 1.50699 * 109.47310 * 195.55231 * 15 11 10 17 17 C 1.38229 * 120.00385 * 263.74679 * 16 15 11 18 18 C 1.38241 * 119.99702 * 179.76415 * 17 16 15 19 19 C 1.38232 * 120.00145 * 0.50704 * 18 17 16 20 20 C 1.38235 * 120.00009 * 359.75072 * 19 18 17 21 21 C 1.38237 * 119.99924 * 359.97438 * 20 19 18 22 22 C 1.53005 * 117.49635 * 305.56704 * 9 7 2 23 23 C 1.53005 * 117.49463 * 236.91055 * 9 7 2 24 24 H 0.97001 * 120.00089 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47048 * 175.68627 * 10 9 7 26 26 H 1.08998 * 109.47409 * 295.69273 * 10 9 7 27 27 H 1.09003 * 109.47149 * 196.06229 * 12 11 10 28 28 H 1.09003 * 109.47151 * 316.05725 * 12 11 10 29 29 H 1.08998 * 109.47293 * 304.15308 * 13 12 11 30 30 H 1.09004 * 109.47160 * 64.15350 * 13 12 11 31 31 H 1.00901 * 110.99955 * 184.39569 * 14 13 12 32 32 H 1.00905 * 111.00044 * 308.34704 * 14 13 12 33 33 H 1.08992 * 109.47391 * 315.56090 * 15 11 10 34 34 H 1.09004 * 109.46863 * 75.55779 * 15 11 10 35 35 H 1.07998 * 120.00284 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.99345 * 180.23167 * 18 17 16 37 37 H 1.07999 * 120.00016 * 179.72085 * 19 18 17 38 38 H 1.07999 * 120.00216 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.99932 * 179.97438 * 21 20 19 40 40 H 1.09001 * 117.50012 * 0.02562 * 22 9 7 41 41 H 1.09005 * 117.49932 * 145.02481 * 22 9 7 42 42 H 1.09002 * 117.49533 * 214.97797 * 23 9 7 43 43 H 1.08991 * 117.50122 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4170 2.0923 -1.3970 5 1 1.4886 2.6284 0.7781 6 1 3.5842 1.4184 0.6189 7 6 2.0045 -1.1941 -0.0005 8 1 1.4705 -2.1259 0.1127 9 6 3.5038 -1.1985 -0.1527 10 6 4.2998 -1.1502 1.1529 11 7 3.8887 -2.2638 2.0184 12 6 4.2378 -1.9976 3.4203 13 6 3.2501 -0.9885 4.0090 14 7 3.6569 -0.6469 5.3786 15 6 4.4756 -3.5305 1.5610 16 6 3.7525 -4.6825 2.2100 17 6 4.2672 -5.2663 3.3523 18 6 3.6013 -6.3198 3.9502 19 6 2.4262 -6.7964 3.3998 20 6 1.9143 -6.2160 2.2544 21 6 2.5772 -5.1587 1.6597 22 6 4.0927 -0.4763 -1.3663 23 6 4.0939 -2.0061 -1.3106 24 1 -0.4850 0.8400 0.0004 25 1 5.3640 -1.2348 0.9329 26 1 4.1077 -0.2052 1.6609 27 1 4.1909 -2.9263 3.9891 28 1 5.2476 -1.5904 3.4722 29 1 3.2432 -0.0869 3.3965 30 1 2.2512 -1.4245 4.0249 31 1 2.9817 -0.0372 5.8150 32 1 3.8028 -1.4789 5.9307 33 1 4.3799 -3.6051 0.4779 34 1 5.5300 -3.5624 1.8356 35 1 5.1878 -4.8971 3.7797 36 1 4.0015 -6.7735 4.8449 37 1 1.9083 -7.6224 3.8644 38 1 0.9964 -6.5885 1.8241 39 1 2.1775 -4.7056 0.7645 40 1 3.3958 0.0023 -2.0543 41 1 5.0476 0.0327 -1.2345 42 1 5.0494 -2.5028 -1.1422 43 1 3.3978 -2.5345 -1.9619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000236180977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:50 Heat of formation + Delta-G solvation = 60.541222 kcal Electronic energy + Delta-G solvation = -21894.443755 eV Core-core repulsion = 18940.313913 eV Total energy + Delta-G solvation = -2954.129842 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.27218 -37.79552 -35.86990 -33.85239 -31.93167 -31.22507 -30.62475 -27.54686 -26.73916 -25.19314 -23.22789 -22.34527 -21.68724 -20.98765 -20.27119 -18.87623 -16.56254 -16.25229 -15.84447 -15.25496 -15.02807 -14.82944 -14.58132 -14.38894 -13.83916 -13.53499 -13.27011 -13.14204 -12.71454 -12.64540 -12.26942 -12.14897 -11.88522 -11.62562 -11.29384 -10.98313 -10.87279 -10.71049 -10.63670 -10.39073 -10.23851 -9.93719 -9.55080 -8.91375 -8.63480 -8.52533 -8.47428 -8.44724 -8.32176 -7.55899 -5.97629 -3.94446 1.60728 1.69169 3.34399 3.44458 3.47669 3.96826 4.41489 4.52060 4.94059 5.07662 5.08942 5.19958 5.25621 5.31447 5.36336 5.42581 5.56299 5.66072 5.76734 5.89244 5.95596 5.97123 6.00485 6.07536 6.18540 6.22735 6.30286 6.33464 6.39317 6.48066 6.50605 6.55880 6.68912 6.75961 6.79837 7.00156 7.11152 7.20583 7.28986 7.31170 7.59449 7.69676 7.82291 7.91531 8.67376 9.09839 9.67176 11.15099 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.006585 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.227277 B = 4251.076944 C = 4749.776261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.074 3.926 3 Si 0.874 3.126 4 H -0.283 1.283 5 H -0.297 1.297 6 H -0.261 1.261 7 C -0.451 4.451 8 H 0.079 0.921 9 C 0.014 3.986 10 C 0.092 3.908 11 N -0.503 5.503 12 C 0.056 3.944 13 C 0.065 3.935 14 N -0.854 5.854 15 C 0.092 3.908 16 C -0.065 4.065 17 C -0.121 4.121 18 C -0.129 4.129 19 C -0.129 4.129 20 C -0.123 4.123 21 C -0.085 4.085 22 C -0.204 4.204 23 C -0.187 4.187 24 H 0.260 0.740 25 H 0.010 0.990 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.031 0.969 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.340 0.660 32 H 0.333 0.667 33 H 0.094 0.906 34 H 0.029 0.971 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.087 0.913 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 -8.808 7.172 14.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.209 1.209 5 H -0.224 1.224 6 H -0.186 1.186 7 C -0.489 4.489 8 H 0.097 0.903 9 C 0.013 3.987 10 C -0.035 4.035 11 N -0.226 5.226 12 C -0.073 4.073 13 C -0.065 4.065 14 N -0.383 5.383 15 C -0.035 4.035 16 C -0.065 4.065 17 C -0.140 4.140 18 C -0.147 4.147 19 C -0.147 4.147 20 C -0.141 4.141 21 C -0.104 4.104 22 C -0.242 4.242 23 C -0.224 4.224 24 H 0.070 0.930 25 H 0.028 0.972 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.254 -8.375 6.785 13.575 hybrid contribution 0.335 0.655 0.357 0.818 sum 8.589 -7.720 7.141 13.578 Atomic orbital electron populations 1.69901 1.06226 1.26560 1.51529 1.24908 0.94446 0.98550 0.94777 0.86964 0.80647 0.84163 0.77953 1.20925 1.22426 1.18594 1.20078 0.86348 0.94371 1.48117 0.90332 1.19416 0.95921 0.98423 0.84975 1.21964 0.93795 0.93086 0.94655 1.61582 1.59252 1.01273 1.00500 1.22052 0.96517 0.98364 0.90325 1.21732 0.97015 0.99210 0.88577 1.58776 1.53565 1.21563 1.04426 1.21124 0.93831 0.87775 1.00781 1.19862 0.95698 0.95851 0.95104 1.21019 1.00035 0.96951 0.95985 1.20992 0.96135 0.97604 0.99961 1.21053 0.96603 1.00340 0.96724 1.21173 0.99837 0.96862 0.96200 1.21193 0.93975 0.94880 1.00311 1.22967 1.01171 0.94725 1.05339 1.22879 1.00634 0.92927 1.05962 0.92968 0.97207 0.90953 0.91456 0.95066 0.90679 0.94195 0.84809 0.85562 0.88804 0.95323 0.86876 0.86793 0.86778 0.86352 0.85192 0.89416 0.91295 0.91440 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.25 13.96 55.43 0.77 -26.47 16 2 C 0.07 2.07 5.46 -17.82 -0.10 1.97 16 3 Si 0.87 21.64 24.92 -169.99 -4.24 17.41 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 5 H -0.30 -7.50 7.11 56.52 0.40 -7.09 16 6 H -0.26 -6.13 5.61 56.52 0.32 -5.81 16 7 C -0.45 -12.09 9.13 -34.44 -0.31 -12.41 16 8 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 9 C 0.01 0.31 0.77 -155.66 -0.12 0.19 16 10 C 0.09 1.87 4.49 -3.82 -0.02 1.85 16 11 N -0.50 -9.36 4.02 -236.07 -0.95 -10.31 16 12 C 0.06 0.93 5.01 -3.82 -0.02 0.91 16 13 C 0.07 1.12 6.95 -3.83 -0.03 1.10 16 14 N -0.85 -11.88 9.65 -10.37 -0.10 -11.98 16 15 C 0.09 1.52 4.92 -4.98 -0.02 1.50 16 16 C -0.06 -1.01 4.94 -104.63 -0.52 -1.53 16 17 C -0.12 -1.65 8.20 -39.58 -0.32 -1.98 16 18 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 19 C -0.13 -1.64 10.05 -39.58 -0.40 -2.04 16 20 C -0.12 -1.74 10.05 -39.58 -0.40 -2.14 16 21 C -0.09 -1.38 9.73 -39.58 -0.38 -1.76 16 22 C -0.20 -4.30 7.62 -26.69 -0.20 -4.51 16 23 C -0.19 -3.68 8.48 -26.69 -0.23 -3.91 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.01 0.19 7.94 -51.93 -0.41 -0.23 16 26 H 0.07 1.57 4.84 -51.93 -0.25 1.32 16 27 H 0.07 1.03 5.75 -51.93 -0.30 0.73 16 28 H 0.03 0.51 7.99 -51.93 -0.42 0.10 16 29 H 0.07 1.47 6.70 -51.93 -0.35 1.12 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.34 4.23 9.08 -39.29 -0.36 3.88 16 32 H 0.33 3.99 8.94 -39.29 -0.35 3.64 16 33 H 0.09 1.62 5.49 -51.93 -0.29 1.33 16 34 H 0.03 0.43 7.96 -51.93 -0.41 0.02 16 35 H 0.11 1.37 7.88 -52.49 -0.41 0.95 16 36 H 0.11 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 39 H 0.13 2.28 8.06 -52.48 -0.42 1.86 16 40 H 0.09 1.97 7.15 -51.93 -0.37 1.60 16 41 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.07 1.17 7.56 -51.93 -0.39 0.78 16 43 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 338.53 15.07 5.10 5.10 Total: -1.00 -29.47 338.53 -9.79 -39.26 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -6.91 Total: 11.75 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -3.47 Total: -24.76 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.27 Total: -48.76 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.24 Total: 17.41 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.47 -9.79 -39.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236180977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.803 kcal (2) G-P(sol) polarization free energy of solvation -29.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds