Wall clock time and date at job start Mon Mar 30 2020 03:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00011 * 2 1 4 4 H 1.48498 * 109.47037 * 273.76322 * 3 2 1 5 5 H 1.48497 * 109.47044 * 33.76302 * 3 2 1 6 6 H 1.48500 * 109.46868 * 153.76576 * 3 2 1 7 7 C 1.37882 * 120.00039 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99404 * 353.02141 * 7 2 1 9 9 C 1.50694 * 120.00073 * 173.30285 * 7 2 1 10 10 C 1.52995 * 115.55405 * 91.23462 * 9 7 2 11 11 N 1.46906 * 109.46658 * 55.69136 * 10 9 7 12 12 C 1.46903 * 110.99767 * 200.52688 * 11 10 9 13 13 C 1.52995 * 109.47264 * 76.05695 * 12 11 10 14 14 N 1.46901 * 109.47148 * 184.14974 * 13 12 11 15 15 C 1.46899 * 111.00177 * 76.56998 * 11 10 9 16 16 C 1.50699 * 109.47310 * 195.55231 * 15 11 10 17 17 C 1.38229 * 120.00385 * 263.74679 * 16 15 11 18 18 C 1.38241 * 119.99702 * 179.76415 * 17 16 15 19 19 C 1.38232 * 120.00145 * 0.50704 * 18 17 16 20 20 C 1.38235 * 120.00009 * 359.75072 * 19 18 17 21 21 C 1.38237 * 119.99924 * 359.97438 * 20 19 18 22 22 C 1.53005 * 117.49635 * 305.56704 * 9 7 2 23 23 C 1.53005 * 117.49463 * 236.91055 * 9 7 2 24 24 H 0.97001 * 120.00089 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47048 * 175.68627 * 10 9 7 26 26 H 1.08998 * 109.47409 * 295.69273 * 10 9 7 27 27 H 1.09003 * 109.47149 * 196.06229 * 12 11 10 28 28 H 1.09003 * 109.47151 * 316.05725 * 12 11 10 29 29 H 1.08998 * 109.47293 * 304.15308 * 13 12 11 30 30 H 1.09004 * 109.47160 * 64.15350 * 13 12 11 31 31 H 1.00901 * 110.99955 * 184.39569 * 14 13 12 32 32 H 1.00905 * 111.00044 * 308.34704 * 14 13 12 33 33 H 1.08992 * 109.47391 * 315.56090 * 15 11 10 34 34 H 1.09004 * 109.46863 * 75.55779 * 15 11 10 35 35 H 1.07998 * 120.00284 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.99345 * 180.23167 * 18 17 16 37 37 H 1.07999 * 120.00016 * 179.72085 * 19 18 17 38 38 H 1.07999 * 120.00216 * 179.97438 * 20 19 18 39 39 H 1.08004 * 119.99932 * 179.97438 * 21 20 19 40 40 H 1.09001 * 117.50012 * 0.02562 * 22 9 7 41 41 H 1.09005 * 117.49932 * 145.02481 * 22 9 7 42 42 H 1.09002 * 117.49533 * 214.97797 * 23 9 7 43 43 H 1.08991 * 117.50122 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4170 2.0923 -1.3970 5 1 1.4886 2.6284 0.7781 6 1 3.5842 1.4184 0.6189 7 6 2.0045 -1.1941 -0.0005 8 1 1.4705 -2.1259 0.1127 9 6 3.5038 -1.1985 -0.1527 10 6 4.2998 -1.1502 1.1529 11 7 3.8887 -2.2638 2.0184 12 6 4.2378 -1.9976 3.4203 13 6 3.2501 -0.9885 4.0090 14 7 3.6569 -0.6469 5.3786 15 6 4.4756 -3.5305 1.5610 16 6 3.7525 -4.6825 2.2100 17 6 4.2672 -5.2663 3.3523 18 6 3.6013 -6.3198 3.9502 19 6 2.4262 -6.7964 3.3998 20 6 1.9143 -6.2160 2.2544 21 6 2.5772 -5.1587 1.6597 22 6 4.0927 -0.4763 -1.3663 23 6 4.0939 -2.0061 -1.3106 24 1 -0.4850 0.8400 0.0004 25 1 5.3640 -1.2348 0.9329 26 1 4.1077 -0.2052 1.6609 27 1 4.1909 -2.9263 3.9891 28 1 5.2476 -1.5904 3.4722 29 1 3.2432 -0.0869 3.3965 30 1 2.2512 -1.4245 4.0249 31 1 2.9817 -0.0372 5.8150 32 1 3.8028 -1.4789 5.9307 33 1 4.3799 -3.6051 0.4779 34 1 5.5300 -3.5624 1.8356 35 1 5.1878 -4.8971 3.7797 36 1 4.0015 -6.7735 4.8449 37 1 1.9083 -7.6224 3.8644 38 1 0.9964 -6.5885 1.8241 39 1 2.1775 -4.7056 0.7645 40 1 3.3958 0.0023 -2.0543 41 1 5.0476 0.0327 -1.2345 42 1 5.0494 -2.5028 -1.1422 43 1 3.3978 -2.5345 -1.9619 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000236180977.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:49 Heat of formation + Delta-G solvation = 40.935119 kcal Electronic energy + Delta-G solvation = -21895.293939 eV Core-core repulsion = 18940.313913 eV Total energy + Delta-G solvation = -2954.980027 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.48858 -39.23487 -37.38072 -35.13060 -34.07342 -32.40922 -31.70010 -28.92129 -28.24872 -27.09185 -24.58783 -23.50781 -23.24369 -22.26864 -21.56033 -20.72338 -18.19532 -17.66143 -17.14969 -16.82019 -16.43873 -16.10241 -15.97522 -15.71615 -15.32093 -14.96077 -14.82161 -14.64821 -14.20812 -13.95976 -13.73856 -13.35156 -13.31621 -13.19379 -12.97032 -12.52537 -12.36639 -12.16878 -12.03968 -11.88950 -11.72647 -11.61732 -11.42790 -10.75994 -10.52708 -10.18900 -9.71893 -9.68024 -9.56179 -8.93993 -8.16941 -6.15986 0.51966 0.59805 1.35561 1.39593 1.50242 2.43505 2.76593 3.10695 3.18871 3.41422 3.84582 3.98029 4.02937 4.05275 4.20331 4.25095 4.30423 4.35280 4.39906 4.44478 4.52534 4.61545 4.66914 4.69660 4.73170 4.85625 4.86779 4.99062 4.99414 5.09438 5.10602 5.22075 5.25820 5.43941 5.54296 5.63943 5.70471 5.81570 5.86092 6.10993 6.20599 6.33711 6.40172 6.54002 6.60294 6.89530 7.48461 8.99859 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.016292 B = 0.006585 C = 0.005894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.227277 B = 4251.076944 C = 4749.776261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C 0.017 3.983 3 Si 0.930 3.070 4 H -0.277 1.277 5 H -0.305 1.305 6 H -0.236 1.236 7 C -0.436 4.436 8 H 0.030 0.970 9 C -0.010 4.010 10 C 0.102 3.898 11 N -0.528 5.528 12 C 0.064 3.936 13 C 0.073 3.927 14 N -0.846 5.846 15 C 0.096 3.904 16 C -0.080 4.080 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.127 4.127 20 C -0.134 4.134 21 C -0.114 4.114 22 C -0.202 4.202 23 C -0.166 4.166 24 H 0.258 0.742 25 H 0.035 0.965 26 H 0.055 0.945 27 H 0.083 0.917 28 H 0.041 0.959 29 H 0.047 0.953 30 H 0.013 0.987 31 H 0.349 0.651 32 H 0.348 0.652 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.135 0.865 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.501 -9.611 8.906 17.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.233 1.233 6 H -0.159 1.159 7 C -0.474 4.474 8 H 0.049 0.951 9 C -0.011 4.011 10 C -0.026 4.026 11 N -0.252 5.252 12 C -0.064 4.064 13 C -0.058 4.058 14 N -0.377 5.377 15 C -0.031 4.031 16 C -0.080 4.080 17 C -0.140 4.140 18 C -0.141 4.141 19 C -0.145 4.145 20 C -0.152 4.152 21 C -0.133 4.133 22 C -0.240 4.240 23 C -0.203 4.203 24 H 0.067 0.933 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.101 0.899 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.162 0.838 32 H 0.161 0.839 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.501 -9.198 8.525 17.016 hybrid contribution -0.730 0.739 -0.152 1.050 sum 10.771 -8.459 8.372 16.052 Atomic orbital electron populations 1.70061 1.08167 1.27186 1.54458 1.25651 0.94987 1.02123 0.95099 0.86034 0.80393 0.79706 0.78155 1.20265 1.23333 1.15916 1.20165 0.89113 0.92217 1.45946 0.95128 1.19328 0.93450 1.01313 0.87042 1.21724 0.94558 0.93071 0.93250 1.61481 1.60568 1.01698 1.01412 1.22002 0.96435 0.98767 0.89203 1.21527 0.96145 0.97979 0.90147 1.58711 1.53431 1.22372 1.03151 1.21082 0.94956 0.86997 1.00039 1.19864 0.95680 0.96166 0.96302 1.21251 1.00725 0.96993 0.94998 1.21416 0.95470 0.96693 1.00521 1.21413 0.96776 1.00597 0.95714 1.21350 1.00218 0.96572 0.97085 1.21102 0.95407 0.96510 1.00281 1.23007 1.01823 0.95603 1.03525 1.22862 1.01447 0.92497 1.03476 0.93275 0.94735 0.92626 0.89916 0.94055 0.93428 0.96903 0.83847 0.83915 0.90296 0.93093 0.84713 0.83394 0.83880 0.85641 0.88462 0.91227 0.88331 0.88091 0.90889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.78 13.96 21.45 0.30 -60.48 16 2 C 0.02 0.97 5.46 84.66 0.46 1.43 16 3 Si 0.93 45.36 24.92 68.60 1.71 47.07 16 4 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 5 H -0.31 -15.22 7.11 99.48 0.71 -14.51 16 6 H -0.24 -10.45 5.61 99.48 0.56 -9.89 16 7 C -0.44 -24.40 9.13 25.60 0.23 -24.17 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 9 C -0.01 -0.44 0.77 -52.93 -0.04 -0.49 16 10 C 0.10 3.96 4.49 86.30 0.39 4.35 16 11 N -0.53 -19.28 4.02 -900.80 -3.62 -22.90 16 12 C 0.06 2.01 5.01 86.30 0.43 2.44 16 13 C 0.07 2.50 6.95 86.30 0.60 3.10 16 14 N -0.85 -22.00 9.65 -186.72 -1.80 -23.80 16 15 C 0.10 3.04 4.92 85.56 0.42 3.47 16 16 C -0.08 -2.43 4.94 -19.87 -0.10 -2.53 16 17 C -0.12 -2.95 8.20 22.27 0.18 -2.77 16 18 C -0.12 -2.63 10.05 22.27 0.22 -2.41 16 19 C -0.13 -2.91 10.05 22.27 0.22 -2.69 16 20 C -0.13 -3.80 10.05 22.27 0.22 -3.58 16 21 C -0.11 -3.85 9.73 22.27 0.22 -3.63 16 22 C -0.20 -8.12 7.62 30.62 0.23 -7.89 16 23 C -0.17 -6.33 8.48 30.62 0.26 -6.07 16 24 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 25 H 0.03 1.18 7.94 -2.39 -0.02 1.16 16 26 H 0.06 2.34 4.84 -2.39 -0.01 2.33 16 27 H 0.08 2.32 5.75 -2.39 -0.01 2.30 16 28 H 0.04 1.23 7.99 -2.39 -0.02 1.21 16 29 H 0.05 1.88 6.70 -2.39 -0.02 1.86 16 30 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 31 H 0.35 8.18 9.08 -89.69 -0.81 7.37 16 32 H 0.35 7.43 8.94 -89.69 -0.80 6.63 16 33 H 0.08 2.68 5.49 -2.39 -0.01 2.67 16 34 H 0.05 1.37 7.96 -2.38 -0.02 1.35 16 35 H 0.14 2.67 7.88 -2.91 -0.02 2.65 16 36 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 37 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.13 3.21 8.06 -2.91 -0.02 3.18 16 39 H 0.10 3.79 8.06 -2.91 -0.02 3.77 16 40 H 0.07 3.05 7.15 -2.39 -0.02 3.04 16 41 H 0.10 3.41 8.14 -2.38 -0.02 3.39 16 42 H 0.10 3.21 7.56 -2.39 -0.02 3.19 16 43 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 Total: -1.00 -67.31 338.53 -0.21 -67.51 By element: Atomic # 1 Polarization: 34.78 SS G_CDS: -0.76 Total: 34.02 kcal Atomic # 6 Polarization: -45.38 SS G_CDS: 3.96 Total: -41.42 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -5.12 Total: -107.18 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.71 Total: 47.07 kcal Total: -67.31 -0.21 -67.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000236180977.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.449 kcal (2) G-P(sol) polarization free energy of solvation -67.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds