Wall clock time and date at job start Mon Mar 30 2020 02:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47490 * 2 1 4 4 C 1.53006 * 109.47323 * 239.99716 * 2 1 3 5 5 C 1.53002 * 109.47032 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47163 * 60.00135 * 5 4 2 7 7 H 1.08996 * 109.46932 * 179.97438 * 6 5 4 8 8 O 1.42908 * 109.46971 * 59.99619 * 6 5 4 9 9 C 1.35676 * 116.99600 * 83.27021 * 8 6 5 10 10 C 1.39310 * 119.81301 * 175.05906 * 9 8 6 11 11 C 1.36442 * 120.18035 * 179.75786 * 10 9 8 12 12 C 1.40834 * 119.81389 * 0.51382 * 11 10 9 13 13 C 1.41212 * 120.17995 * 179.71772 * 12 11 10 14 14 H 1.08002 * 119.99841 * 28.85782 * 13 12 11 15 15 C 1.39891 * 120.00087 * 208.85163 * 13 12 11 16 16 N 1.30880 * 119.99626 * 11.10896 * 15 13 12 17 17 Si 1.86803 * 119.99874 * 191.10501 * 15 13 12 18 18 H 1.48495 * 109.47040 * 60.00621 * 17 15 13 19 19 H 1.48503 * 109.46631 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47055 * 300.00185 * 17 15 13 21 21 C 1.40837 * 119.64072 * 359.73869 * 12 11 10 22 22 C 1.36438 * 119.80769 * 0.02562 * 21 12 11 23 23 C 1.53006 * 109.47036 * 299.99863 * 6 5 4 24 24 C 1.52999 * 109.46828 * 119.99878 * 2 1 3 25 25 H 1.09005 * 109.47626 * 60.00272 * 24 2 1 26 26 C 1.53000 * 109.47200 * 299.99757 * 24 2 1 27 27 H 1.08999 * 109.46905 * 300.00280 * 1 2 3 28 28 H 1.09003 * 109.46948 * 60.00450 * 1 2 3 29 29 H 1.08995 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46665 * 59.99726 * 4 2 1 31 31 H 1.09006 * 109.46754 * 300.00115 * 4 2 1 32 32 H 1.08995 * 109.46802 * 299.99686 * 5 4 2 33 33 H 1.08999 * 109.46615 * 180.02562 * 5 4 2 34 34 H 1.07998 * 119.91317 * 0.02562 * 10 9 8 35 35 H 1.08005 * 120.08993 * 180.24988 * 11 10 9 36 36 H 0.96999 * 119.99643 * 179.97438 * 16 15 13 37 37 H 1.07991 * 120.09519 * 180.02562 * 21 12 11 38 38 H 1.08006 * 119.90178 * 179.97438 * 22 21 12 39 39 H 1.08996 * 109.46700 * 300.00144 * 23 6 5 40 40 H 1.08999 * 109.46366 * 180.02562 * 23 6 5 41 41 H 1.08996 * 109.47197 * 299.99926 * 26 24 2 42 42 H 1.08999 * 109.46871 * 60.00616 * 26 24 2 43 43 H 1.09006 * 109.47108 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 1 5.1695 -1.4442 0.0004 8 8 3.6026 -2.7906 0.0002 9 6 4.3106 -3.6944 -0.7228 10 6 3.9596 -5.0419 -0.6818 11 6 4.6633 -5.9565 -1.4097 12 6 5.7540 -5.5365 -2.1955 13 6 6.4914 -6.4774 -2.9472 14 1 6.0112 -7.3741 -3.3102 15 6 7.8438 -6.2480 -3.2217 16 7 8.4815 -5.2835 -2.6083 17 14 8.7394 -7.3182 -4.4634 18 1 8.0791 -7.1977 -5.7881 19 1 10.1523 -6.8738 -4.5719 20 1 8.6991 -8.7339 -4.0170 21 6 6.1055 -4.1731 -2.2272 22 6 5.3884 -3.2707 -1.4972 23 6 3.5695 -0.7221 1.2497 24 6 2.0399 -0.7212 1.2493 25 1 1.6766 -1.7490 1.2493 26 6 1.5299 0.0001 2.4985 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6767 -0.2075 -2.1392 31 1 1.6767 -1.7490 -1.2491 32 1 3.9337 0.3057 -1.2487 33 1 3.9334 -1.2353 -2.1390 34 1 3.1254 -5.3629 -0.0755 35 1 4.3874 -7.0003 -1.3799 36 1 9.4193 -5.1247 -2.7984 37 1 6.9402 -3.8429 -2.8275 38 1 5.6569 -2.2248 -1.5200 39 1 3.9332 0.3054 1.2498 40 1 3.9328 -1.2360 2.1396 41 1 1.8933 1.0277 2.4985 42 1 0.4400 0.0000 2.4985 43 1 1.8929 -0.5140 3.3885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251612745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:46 Heat of formation + Delta-G solvation = -51.810573 kcal Electronic energy + Delta-G solvation = -21400.747291 eV Core-core repulsion = 18409.452759 eV Total energy + Delta-G solvation = -2991.294533 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.80861 -37.86726 -36.03709 -33.31714 -32.20563 -31.68550 -29.59572 -28.94692 -27.16115 -25.42963 -24.77213 -21.98293 -21.35634 -20.93533 -20.17787 -19.09513 -17.30649 -16.65378 -15.56162 -15.22024 -14.81138 -14.43752 -14.19313 -13.90966 -13.69362 -13.53392 -12.97437 -12.70838 -12.34619 -12.22875 -12.13296 -11.86947 -11.75086 -11.60560 -11.42616 -11.36984 -11.17126 -11.08898 -10.95282 -10.76533 -10.53557 -10.36863 -10.04361 -9.81503 -9.69224 -9.55732 -9.24866 -8.99281 -7.60384 -6.88726 -6.63483 -4.22871 2.82432 3.00389 3.10180 3.13389 3.24896 3.99598 4.19156 4.69268 4.77250 4.80842 4.87137 5.14183 5.28880 5.44585 5.47755 5.52216 5.61718 5.68472 5.70335 5.76226 5.84230 5.85979 5.94858 5.97561 6.07574 6.13171 6.14289 6.18637 6.30726 6.38003 6.42320 6.47048 6.55321 6.68388 6.80797 6.94339 7.12355 7.34226 7.47282 7.61173 7.96128 8.05138 8.21026 8.51940 8.71646 8.95984 9.04540 10.31679 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.039297 B = 0.003760 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.354366 B = 7444.957005 C = 7509.008585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.084 4.084 3 H 0.063 0.937 4 C -0.107 4.107 5 C -0.144 4.144 6 C 0.092 3.908 7 H 0.064 0.936 8 O -0.317 6.317 9 C 0.003 3.997 10 C -0.121 4.121 11 C -0.191 4.191 12 C 0.085 3.915 13 C -0.466 4.466 14 H 0.074 0.926 15 C 0.073 3.927 16 N -0.811 5.811 17 Si 0.909 3.091 18 H -0.266 1.266 19 H -0.280 1.280 20 H -0.267 1.267 21 C -0.126 4.126 22 C -0.179 4.179 23 C -0.106 4.106 24 C -0.084 4.084 25 H 0.080 0.920 26 C -0.148 4.148 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.278 0.722 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.953 10.530 4.681 14.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.103 4.103 3 H 0.081 0.919 4 C -0.145 4.145 5 C -0.182 4.182 6 C 0.035 3.965 7 H 0.082 0.918 8 O -0.233 6.233 9 C -0.040 4.040 10 C -0.139 4.139 11 C -0.211 4.211 12 C 0.082 3.918 13 C -0.497 4.497 14 H 0.092 0.908 15 C -0.142 4.142 16 N -0.438 5.438 17 Si 0.734 3.266 18 H -0.190 1.190 19 H -0.205 1.205 20 H -0.192 1.192 21 C -0.145 4.145 22 C -0.198 4.198 23 C -0.144 4.144 24 C -0.102 4.102 25 H 0.098 0.902 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.089 0.911 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.115 0.885 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.879 10.594 4.809 14.635 hybrid contribution 0.847 -0.347 -0.658 1.128 sum -8.032 10.247 4.151 13.665 Atomic orbital electron populations 1.21879 0.95681 1.01824 1.01109 1.21144 0.95130 0.98960 0.95039 0.91850 1.21456 0.95122 1.01331 0.96561 1.22084 0.96680 1.00178 0.99233 1.22052 0.97945 0.81937 0.94569 0.91795 1.85865 1.52204 1.16687 1.68549 1.18612 0.96296 0.88863 1.00239 1.19615 1.01248 0.90234 1.02840 1.20645 1.01371 0.97133 1.01935 1.17586 0.91092 0.92318 0.90759 1.19411 0.94308 1.05806 1.30164 0.90760 1.25830 0.97952 0.95295 0.95158 1.69796 1.10787 1.27948 1.35292 0.86357 0.78170 0.80676 0.81371 1.19036 1.20491 1.19166 1.20997 1.00189 0.92590 1.00753 1.20678 0.98194 0.98580 1.02345 1.21639 0.95940 0.99550 0.97240 1.21071 0.94862 1.00396 0.93884 0.90193 1.21903 1.00908 1.00089 0.97652 0.92714 0.93130 0.92642 0.92661 0.91051 0.91811 0.90953 0.88691 0.88356 0.91141 0.86078 0.88535 0.91082 0.91441 0.93117 0.92602 0.92922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 8.84 37.16 0.33 -1.17 16 2 C -0.08 -0.97 2.25 -90.62 -0.20 -1.17 16 3 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.11 -1.45 5.06 -26.73 -0.14 -1.58 16 5 C -0.14 -2.11 5.23 -26.73 -0.14 -2.25 16 6 C 0.09 1.49 2.43 -26.73 -0.06 1.43 16 7 H 0.06 1.10 6.36 -51.93 -0.33 0.77 16 8 O -0.32 -6.28 8.44 -18.73 -0.16 -6.44 16 9 C 0.00 0.07 6.61 -38.78 -0.26 -0.18 16 10 C -0.12 -2.81 9.92 -39.83 -0.40 -3.21 16 11 C -0.19 -4.75 9.74 -39.25 -0.38 -5.14 16 12 C 0.08 2.28 5.55 -106.80 -0.59 1.68 16 13 C -0.47 -12.54 9.05 -37.83 -0.34 -12.88 16 14 H 0.07 1.92 7.87 -52.49 -0.41 1.50 16 15 C 0.07 1.86 5.24 -17.34 -0.09 1.77 16 16 N -0.81 -21.34 10.86 55.54 0.60 -20.73 16 17 Si 0.91 19.06 29.57 -169.99 -5.03 14.04 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 C -0.13 -3.28 8.60 -39.25 -0.34 -3.62 16 22 C -0.18 -4.19 8.10 -39.83 -0.32 -4.52 16 23 C -0.11 -1.40 4.94 -26.75 -0.13 -1.53 16 24 C -0.08 -1.02 2.10 -90.64 -0.19 -1.21 16 25 H 0.08 1.15 7.68 -51.93 -0.40 0.75 16 26 C -0.15 -1.48 8.84 37.16 0.33 -1.15 16 27 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.12 7.68 -51.93 -0.40 0.72 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.20 6.76 -51.93 -0.35 0.85 16 34 H 0.09 2.01 8.06 -52.49 -0.42 1.58 16 35 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 36 H 0.28 6.71 8.30 -40.82 -0.34 6.37 16 37 H 0.12 3.27 6.23 -52.49 -0.33 2.94 16 38 H 0.10 2.03 5.35 -52.48 -0.28 1.75 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.51 6.43 -51.93 -0.33 0.18 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -27.41 331.18 -9.47 -36.88 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.95 Total: 6.01 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: -2.93 Total: -34.75 kcal Atomic # 7 Polarization: -21.34 SS G_CDS: 0.60 Total: -20.73 kcal Atomic # 8 Polarization: -6.28 SS G_CDS: -0.16 Total: -6.44 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.03 Total: 14.04 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.41 -9.47 -36.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251612745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.930 kcal (2) G-P(sol) polarization free energy of solvation -27.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds