Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47490 * 2 1 4 4 C 1.53006 * 109.47323 * 239.99716 * 2 1 3 5 5 C 1.53002 * 109.47032 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47163 * 60.00135 * 5 4 2 7 7 H 1.08996 * 109.46932 * 179.97438 * 6 5 4 8 8 O 1.42908 * 109.46971 * 59.99619 * 6 5 4 9 9 C 1.35676 * 116.99600 * 83.27021 * 8 6 5 10 10 C 1.39310 * 119.81301 * 175.05906 * 9 8 6 11 11 C 1.36442 * 120.18035 * 179.75786 * 10 9 8 12 12 C 1.40834 * 119.81389 * 0.51382 * 11 10 9 13 13 C 1.41212 * 120.17995 * 179.71772 * 12 11 10 14 14 H 1.08002 * 119.99841 * 28.85782 * 13 12 11 15 15 C 1.39891 * 120.00087 * 208.85163 * 13 12 11 16 16 N 1.30880 * 119.99626 * 11.10896 * 15 13 12 17 17 Si 1.86803 * 119.99874 * 191.10501 * 15 13 12 18 18 H 1.48495 * 109.47040 * 60.00621 * 17 15 13 19 19 H 1.48503 * 109.46631 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47055 * 300.00185 * 17 15 13 21 21 C 1.40837 * 119.64072 * 359.73869 * 12 11 10 22 22 C 1.36438 * 119.80769 * 0.02562 * 21 12 11 23 23 C 1.53006 * 109.47036 * 299.99863 * 6 5 4 24 24 C 1.52999 * 109.46828 * 119.99878 * 2 1 3 25 25 H 1.09005 * 109.47626 * 60.00272 * 24 2 1 26 26 C 1.53000 * 109.47200 * 299.99757 * 24 2 1 27 27 H 1.08999 * 109.46905 * 300.00280 * 1 2 3 28 28 H 1.09003 * 109.46948 * 60.00450 * 1 2 3 29 29 H 1.08995 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46665 * 59.99726 * 4 2 1 31 31 H 1.09006 * 109.46754 * 300.00115 * 4 2 1 32 32 H 1.08995 * 109.46802 * 299.99686 * 5 4 2 33 33 H 1.08999 * 109.46615 * 180.02562 * 5 4 2 34 34 H 1.07998 * 119.91317 * 0.02562 * 10 9 8 35 35 H 1.08005 * 120.08993 * 180.24988 * 11 10 9 36 36 H 0.96999 * 119.99643 * 179.97438 * 16 15 13 37 37 H 1.07991 * 120.09519 * 180.02562 * 21 12 11 38 38 H 1.08006 * 119.90178 * 179.97438 * 22 21 12 39 39 H 1.08996 * 109.46700 * 300.00144 * 23 6 5 40 40 H 1.08999 * 109.46366 * 180.02562 * 23 6 5 41 41 H 1.08996 * 109.47197 * 299.99926 * 26 24 2 42 42 H 1.08999 * 109.46871 * 60.00616 * 26 24 2 43 43 H 1.09006 * 109.47108 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5701 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 1 5.1695 -1.4442 0.0004 8 8 3.6026 -2.7906 0.0002 9 6 4.3106 -3.6944 -0.7228 10 6 3.9596 -5.0419 -0.6818 11 6 4.6633 -5.9565 -1.4097 12 6 5.7540 -5.5365 -2.1955 13 6 6.4914 -6.4774 -2.9472 14 1 6.0112 -7.3741 -3.3102 15 6 7.8438 -6.2480 -3.2217 16 7 8.4815 -5.2835 -2.6083 17 14 8.7394 -7.3182 -4.4634 18 1 8.0791 -7.1977 -5.7881 19 1 10.1523 -6.8738 -4.5719 20 1 8.6991 -8.7339 -4.0170 21 6 6.1055 -4.1731 -2.2272 22 6 5.3884 -3.2707 -1.4972 23 6 3.5695 -0.7221 1.2497 24 6 2.0399 -0.7212 1.2493 25 1 1.6766 -1.7490 1.2493 26 6 1.5299 0.0001 2.4985 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6767 -0.2075 -2.1392 31 1 1.6767 -1.7490 -1.2491 32 1 3.9337 0.3057 -1.2487 33 1 3.9334 -1.2353 -2.1390 34 1 3.1254 -5.3629 -0.0755 35 1 4.3874 -7.0003 -1.3799 36 1 9.4193 -5.1247 -2.7984 37 1 6.9402 -3.8429 -2.8275 38 1 5.6569 -2.2248 -1.5200 39 1 3.9332 0.3054 1.2498 40 1 3.9328 -1.2360 2.1396 41 1 1.8933 1.0277 2.4985 42 1 0.4400 0.0000 2.4985 43 1 1.8929 -0.5140 3.3885 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251612745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = -63.458525 kcal Electronic energy + Delta-G solvation = -21401.252384 eV Core-core repulsion = 18409.452759 eV Total energy + Delta-G solvation = -2991.799626 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.167 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.20583 -39.40062 -37.64992 -35.18334 -33.34069 -32.78825 -31.50549 -30.81366 -28.17188 -26.68268 -26.43880 -23.35428 -22.84160 -22.60205 -21.41760 -20.39832 -19.24789 -18.28777 -17.15634 -16.61431 -16.35137 -15.79608 -15.39331 -15.29948 -15.04021 -14.83438 -14.41763 -14.27166 -13.94902 -13.70401 -13.53818 -13.12387 -13.03941 -12.84597 -12.72874 -12.67356 -12.60252 -12.41864 -12.37159 -12.11228 -11.83298 -11.71471 -11.60954 -11.28950 -11.10923 -10.98139 -10.76638 -10.68169 -9.54331 -8.80437 -8.54157 -6.23717 0.95842 1.06034 1.39116 1.50451 1.53388 2.23983 2.67934 2.78221 3.68938 3.75933 3.77963 3.83931 4.11127 4.18066 4.27474 4.37841 4.43198 4.47171 4.56407 4.66941 4.70250 4.80128 4.81562 4.92949 4.95846 4.99027 5.02913 5.08576 5.11403 5.16676 5.20150 5.21946 5.34715 5.35632 5.39904 5.47267 5.56902 5.58381 5.68284 5.72027 6.00589 6.08582 6.25996 6.59278 6.84391 6.97780 7.13963 8.42580 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.039297 B = 0.003760 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.354366 B = 7444.957005 C = 7509.008585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 H 0.082 0.918 4 C -0.105 4.105 5 C -0.141 4.141 6 C 0.081 3.919 7 H 0.052 0.948 8 O -0.320 6.320 9 C 0.015 3.985 10 C -0.130 4.130 11 C -0.199 4.199 12 C 0.051 3.949 13 C -0.503 4.503 14 H 0.074 0.926 15 C 0.031 3.969 16 N -0.842 5.842 17 Si 0.984 3.016 18 H -0.261 1.261 19 H -0.269 1.269 20 H -0.261 1.261 21 C -0.146 4.146 22 C -0.179 4.179 23 C -0.102 4.102 24 C -0.083 4.083 25 H 0.052 0.948 26 C -0.143 4.143 27 H 0.070 0.930 28 H 0.058 0.942 29 H 0.042 0.958 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.284 0.716 37 H 0.105 0.895 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.668 12.160 5.211 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.100 0.900 4 C -0.143 4.143 5 C -0.179 4.179 6 C 0.025 3.975 7 H 0.070 0.930 8 O -0.236 6.236 9 C -0.029 4.029 10 C -0.149 4.149 11 C -0.219 4.219 12 C 0.049 3.951 13 C -0.534 4.534 14 H 0.092 0.908 15 C -0.181 4.181 16 N -0.470 5.470 17 Si 0.805 3.195 18 H -0.186 1.186 19 H -0.194 1.194 20 H -0.186 1.186 21 C -0.166 4.166 22 C -0.198 4.198 23 C -0.139 4.139 24 C -0.101 4.101 25 H 0.071 0.929 26 C -0.200 4.200 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.614 12.238 5.356 16.459 hybrid contribution 0.975 -0.741 -0.728 1.425 sum -8.639 11.497 4.627 15.107 Atomic orbital electron populations 1.21859 0.94563 1.01461 1.02373 1.21130 0.96063 0.99294 0.93312 0.90006 1.21444 0.94144 1.00189 0.98528 1.22063 0.97608 1.01094 0.97136 1.22427 0.97534 0.80381 0.97174 0.92978 1.85884 1.51898 1.18158 1.67629 1.18717 0.95471 0.89473 0.99214 1.19890 1.01705 0.90479 1.02785 1.20839 1.01108 0.98078 1.01852 1.17931 0.92300 0.92911 0.91957 1.19676 0.95523 1.06333 1.31851 0.90819 1.26691 0.98226 0.96626 0.96592 1.69867 1.11372 1.29387 1.36394 0.85233 0.77061 0.78749 0.78495 1.18565 1.19374 1.18552 1.20953 1.00659 0.93039 1.01940 1.20837 0.98001 0.99217 1.01748 1.21684 0.96742 1.00387 0.95134 1.21040 0.94039 0.99422 0.95608 0.92929 1.21853 1.01494 1.00516 0.96150 0.91095 0.92257 0.93852 0.91371 0.93924 0.89051 0.93494 0.86479 0.87388 0.90526 0.87668 0.86603 0.88327 0.91897 0.91568 0.91678 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.84 71.98 0.64 -1.93 16 2 C -0.08 -1.62 2.25 -10.79 -0.02 -1.64 16 3 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.11 -2.70 5.06 30.60 0.15 -2.54 16 5 C -0.14 -3.96 5.23 30.59 0.16 -3.80 16 6 C 0.08 2.55 2.43 30.60 0.07 2.62 16 7 H 0.05 1.76 6.36 -2.39 -0.02 1.74 16 8 O -0.32 -12.60 8.44 -89.93 -0.76 -13.36 16 9 C 0.02 0.71 6.61 22.79 0.15 0.86 16 10 C -0.13 -6.11 9.92 22.11 0.22 -5.89 16 11 C -0.20 -10.15 9.74 22.49 0.22 -9.93 16 12 C 0.05 2.84 5.55 -21.28 -0.12 2.73 16 13 C -0.50 -27.98 9.05 23.40 0.21 -27.77 16 14 H 0.07 3.93 7.87 -2.91 -0.02 3.91 16 15 C 0.03 1.60 5.24 85.23 0.45 2.04 16 16 N -0.84 -45.45 10.86 21.82 0.24 -45.22 16 17 Si 0.98 39.45 29.57 68.60 2.03 41.48 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 21 C -0.15 -7.93 8.60 22.49 0.19 -7.74 16 22 C -0.18 -8.58 8.10 22.11 0.18 -8.40 16 23 C -0.10 -2.46 4.94 30.58 0.15 -2.31 16 24 C -0.08 -1.83 2.10 -10.81 -0.02 -1.86 16 25 H 0.05 1.46 7.68 -2.38 -0.02 1.44 16 26 C -0.14 -2.40 8.84 71.98 0.64 -1.77 16 27 H 0.07 1.03 6.43 -2.39 -0.02 1.02 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.32 7.68 -2.38 -0.02 1.31 16 32 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 33 H 0.05 1.55 6.76 -2.39 -0.02 1.53 16 34 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 35 H 0.11 5.13 8.06 -2.91 -0.02 5.10 16 36 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 37 H 0.11 5.95 6.23 -2.92 -0.02 5.94 16 38 H 0.12 4.96 5.35 -2.91 -0.02 4.94 16 39 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.06 0.98 6.43 -2.39 -0.02 0.97 16 43 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 Total: -1.00 -60.74 331.18 5.75 -54.99 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.97 Total: 29.43 kcal Atomic # 6 Polarization: -70.60 SS G_CDS: 3.27 Total: -67.33 kcal Atomic # 7 Polarization: -45.45 SS G_CDS: 0.24 Total: -45.22 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: -0.76 Total: -13.36 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -60.74 5.75 -54.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251612745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.464 kcal (2) G-P(sol) polarization free energy of solvation -60.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds