Wall clock time and date at job start Mon Mar 30 2020 03:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.46929 * 269.99986 * 3 2 1 5 5 H 1.48502 * 109.47083 * 29.99510 * 3 2 1 6 6 H 1.48499 * 109.47446 * 149.99591 * 3 2 1 7 7 C 1.37881 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00282 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99928 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.53124 * 109.52739 * 185.00207 * 10 9 7 12 12 C 1.53037 * 109.28148 * 182.44191 * 11 10 9 13 13 N 1.46844 * 109.52152 * 59.17731 * 12 11 10 14 14 C 1.46906 * 110.99887 * 174.16043 * 13 12 11 15 15 C 1.53000 * 109.47072 * 170.00138 * 14 13 12 16 16 C 1.50696 * 109.47198 * 180.02562 * 15 14 13 17 17 C 1.38669 * 120.42527 * 89.99567 * 16 15 14 18 18 C 1.38623 * 118.42602 * 180.02562 * 17 16 15 19 19 C 1.38227 * 119.16054 * 0.02562 * 18 17 16 20 20 N 1.31855 * 120.76487 * 0.02562 * 19 18 17 21 21 C 1.31889 * 121.72186 * 359.70637 * 20 19 18 22 22 C 1.46850 * 111.19991 * 298.25708 * 13 12 11 23 23 C 1.53032 * 109.52098 * 61.74469 * 22 13 12 24 24 H 0.96997 * 120.00199 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47245 * 60.00648 * 9 7 2 26 26 H 1.09001 * 109.47674 * 300.00347 * 9 7 2 27 27 H 1.09001 * 109.57651 * 305.16118 * 10 9 7 28 28 H 1.08997 * 109.50392 * 62.49613 * 11 10 9 29 29 H 1.09000 * 109.49712 * 302.38247 * 11 10 9 30 30 H 1.08995 * 109.46089 * 299.16330 * 12 11 10 31 31 H 1.09000 * 109.45256 * 179.18504 * 12 11 10 32 32 H 1.08993 * 109.47164 * 289.99991 * 14 13 12 33 33 H 1.08996 * 109.46920 * 50.00025 * 14 13 12 34 34 H 1.09002 * 109.46936 * 299.99708 * 15 14 13 35 35 H 1.08996 * 109.47340 * 60.00144 * 15 14 13 36 36 H 1.08003 * 120.78327 * 359.97438 * 17 16 15 37 37 H 1.08004 * 120.42123 * 180.02562 * 18 17 16 38 38 H 1.07995 * 119.61971 * 179.97438 * 19 18 17 39 39 H 1.08003 * 119.61433 * 180.31219 * 21 20 19 40 40 H 1.09005 * 109.46314 * 181.76064 * 22 13 12 41 41 H 1.08998 * 109.46244 * 301.72632 * 22 13 12 42 42 H 1.09004 * 109.50441 * 180.87586 * 23 22 13 43 43 H 1.08999 * 109.50499 * 60.76414 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5475 -2.6399 0.1274 12 6 6.0566 -4.0818 0.0654 13 7 5.6517 -4.6908 -1.2079 14 6 6.2399 -6.0280 -1.3625 15 6 5.6061 -6.7280 -2.5664 16 6 6.2091 -8.1000 -2.7245 17 6 5.6424 -9.1937 -2.0877 18 6 6.2313 -10.4366 -2.2615 19 6 7.3562 -10.5435 -3.0576 20 7 7.8686 -9.4813 -3.6472 21 6 7.3319 -8.2846 -3.5085 22 6 4.1892 -4.7418 -1.3309 23 6 3.6244 -3.3196 -1.3106 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.5853 -3.1782 0.8403 28 1 5.8348 -2.1931 1.0792 29 1 5.9816 -2.0652 -0.6908 30 1 5.6329 -4.6523 0.8919 31 1 7.1440 -4.0864 0.1407 32 1 7.3145 -5.9363 -1.5198 33 1 6.0532 -6.6133 -0.4621 34 1 4.5314 -6.8198 -2.4090 35 1 5.7928 -6.1427 -3.4667 36 1 4.7636 -9.0798 -1.4704 37 1 5.8165 -11.3103 -1.7808 38 1 7.8212 -11.5081 -3.1977 39 1 7.7770 -7.4385 -4.0111 40 1 3.9203 -5.2260 -2.2697 41 1 3.7743 -5.3093 -0.4979 42 1 2.5377 -3.3585 -1.3863 43 1 4.0283 -2.7557 -2.1514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259871206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:08 Heat of formation + Delta-G solvation = 18.499055 kcal Electronic energy + Delta-G solvation = -20554.020128 eV Core-core repulsion = 17598.067200 eV Total energy + Delta-G solvation = -2955.952927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47557 -38.92379 -35.52761 -33.56626 -32.36841 -31.94641 -30.52374 -29.34113 -27.49313 -24.54679 -23.83000 -22.98856 -22.81665 -21.10412 -20.24770 -19.01130 -17.36307 -16.73261 -16.65369 -16.11319 -15.14538 -14.81565 -14.56499 -14.29989 -14.04527 -13.77347 -13.47454 -13.32694 -13.20454 -13.02898 -12.76433 -12.19359 -11.94331 -11.86542 -11.61992 -11.34611 -11.13414 -10.86286 -10.72157 -10.55959 -10.16330 -10.03037 -9.76147 -9.70117 -9.56615 -9.30464 -9.12298 -8.98284 -8.50579 -8.14795 -6.01545 -3.98362 0.82808 1.00474 3.32854 3.40227 3.44348 3.52097 3.95881 4.22057 4.48090 4.52938 4.61786 4.71379 4.75564 4.95229 5.03211 5.20501 5.31080 5.31845 5.34043 5.40962 5.49390 5.55904 5.65429 5.74529 5.78651 5.82830 5.88726 5.95079 6.05417 6.08315 6.18028 6.34451 6.43274 6.48478 6.57505 6.85677 6.95447 7.04351 7.24314 7.29107 7.36623 7.51544 7.70181 7.84066 8.57629 9.03567 9.61912 11.11905 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.042458 B = 0.002969 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.320194 B = 9428.259474 C = 9710.304167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.514 4.514 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.073 4.073 11 C -0.115 4.115 12 C 0.060 3.940 13 N -0.536 5.536 14 C 0.063 3.937 15 C -0.083 4.083 16 C -0.126 4.126 17 C -0.074 4.074 18 C -0.171 4.171 19 C 0.088 3.912 20 N -0.485 5.485 21 C 0.102 3.898 22 C 0.048 3.952 23 C -0.101 4.101 24 H 0.262 0.738 25 H 0.014 0.986 26 H 0.012 0.988 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.073 0.927 41 H 0.028 0.972 42 H 0.077 0.923 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.990 -18.206 -4.001 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.552 4.552 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.092 4.092 11 C -0.152 4.152 12 C -0.067 4.067 13 N -0.261 5.261 14 C -0.065 4.065 15 C -0.121 4.121 16 C -0.129 4.129 17 C -0.100 4.100 18 C -0.191 4.191 19 C -0.069 4.069 20 N -0.193 5.193 21 C -0.055 4.055 22 C -0.079 4.079 23 C -0.139 4.139 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.048 0.952 34 H 0.099 0.901 35 H 0.106 0.894 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.171 0.829 39 H 0.173 0.827 40 H 0.092 0.908 41 H 0.046 0.954 42 H 0.096 0.904 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.765 -17.888 -4.889 23.704 hybrid contribution -0.774 0.435 1.268 1.548 sum 13.992 -17.452 -3.621 22.660 Atomic orbital electron populations 1.69915 1.06287 1.26768 1.51580 1.25036 0.94700 0.99136 0.94752 0.86795 0.80360 0.83753 0.78470 1.20355 1.21561 1.19055 1.21154 0.89539 0.94258 1.50205 0.90997 1.19608 0.97050 0.91822 0.96128 1.21053 0.92449 0.98796 0.96870 1.21726 0.97583 0.94483 1.01442 1.22076 0.99370 0.96259 0.89041 1.62046 1.10185 1.19394 1.34505 1.22049 0.99377 0.89019 0.96044 1.20759 1.00287 0.90981 1.00085 1.20955 0.97148 0.96581 0.98204 1.21562 0.99186 0.92166 0.97102 1.22152 0.97848 0.98446 1.00640 1.22751 0.93353 0.97454 0.93317 1.67699 1.31283 0.99392 1.20943 1.22750 0.92391 0.94868 0.95522 1.22341 0.86424 0.99041 1.00107 1.21564 1.01049 0.92932 0.98371 0.92856 0.96812 0.96991 0.92493 0.92132 0.91578 0.95299 0.91617 0.90875 0.95204 0.90053 0.89446 0.84892 0.84855 0.82947 0.82671 0.90843 0.95420 0.90421 0.91889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 3 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 7 C -0.51 -14.38 9.00 -34.44 -0.31 -14.69 16 8 H 0.07 2.15 7.33 -52.49 -0.38 1.77 16 9 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 10 C -0.07 -1.42 2.20 -90.50 -0.20 -1.62 16 11 C -0.11 -1.85 5.38 -26.65 -0.14 -1.99 16 12 C 0.06 0.83 5.42 -3.84 -0.02 0.81 16 13 N -0.54 -7.22 4.81 -234.67 -1.13 -8.35 16 14 C 0.06 0.68 5.26 -3.82 -0.02 0.66 16 15 C -0.08 -0.79 4.62 -27.88 -0.13 -0.92 16 16 C -0.13 -1.18 5.15 -104.48 -0.54 -1.72 16 17 C -0.07 -0.64 9.86 -39.28 -0.39 -1.02 16 18 C -0.17 -1.33 10.11 -39.44 -0.40 -1.73 16 19 C 0.09 0.76 11.18 -17.55 -0.20 0.57 16 20 N -0.48 -5.22 10.36 -13.25 -0.14 -5.36 16 21 C 0.10 1.00 10.86 -17.55 -0.19 0.81 16 22 C 0.05 0.70 4.85 -3.83 -0.02 0.68 16 23 C -0.10 -1.83 5.15 -26.65 -0.14 -1.97 16 24 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 25 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16 26 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.81 8.12 -51.93 -0.42 0.38 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.03 0.33 8.08 -51.93 -0.42 -0.09 16 34 H 0.08 0.78 6.16 -51.93 -0.32 0.46 16 35 H 0.09 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 37 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 38 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 39 H 0.16 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.07 0.94 5.81 -51.93 -0.30 0.64 16 41 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.08 1.55 7.06 -51.93 -0.37 1.19 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -31.24 338.33 -10.17 -41.40 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -7.22 Total: -2.19 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -2.88 Total: -20.65 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -0.49 Total: -40.83 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.24 -10.17 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.903 kcal (2) G-P(sol) polarization free energy of solvation -31.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds