Wall clock time and date at job start Mon Mar 30 2020 03:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86795 * 120.00229 * 2 1 4 4 H 1.48503 * 109.46929 * 269.99986 * 3 2 1 5 5 H 1.48502 * 109.47083 * 29.99510 * 3 2 1 6 6 H 1.48499 * 109.47446 * 149.99591 * 3 2 1 7 7 C 1.37881 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00282 * 0.02562 * 7 2 1 9 9 C 1.50695 * 119.99928 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47326 * 180.02562 * 9 7 2 11 11 C 1.53124 * 109.52739 * 185.00207 * 10 9 7 12 12 C 1.53037 * 109.28148 * 182.44191 * 11 10 9 13 13 N 1.46844 * 109.52152 * 59.17731 * 12 11 10 14 14 C 1.46906 * 110.99887 * 174.16043 * 13 12 11 15 15 C 1.53000 * 109.47072 * 170.00138 * 14 13 12 16 16 C 1.50696 * 109.47198 * 180.02562 * 15 14 13 17 17 C 1.38669 * 120.42527 * 89.99567 * 16 15 14 18 18 C 1.38623 * 118.42602 * 180.02562 * 17 16 15 19 19 C 1.38227 * 119.16054 * 0.02562 * 18 17 16 20 20 N 1.31855 * 120.76487 * 0.02562 * 19 18 17 21 21 C 1.31889 * 121.72186 * 359.70637 * 20 19 18 22 22 C 1.46850 * 111.19991 * 298.25708 * 13 12 11 23 23 C 1.53032 * 109.52098 * 61.74469 * 22 13 12 24 24 H 0.96997 * 120.00199 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47245 * 60.00648 * 9 7 2 26 26 H 1.09001 * 109.47674 * 300.00347 * 9 7 2 27 27 H 1.09001 * 109.57651 * 305.16118 * 10 9 7 28 28 H 1.08997 * 109.50392 * 62.49613 * 11 10 9 29 29 H 1.09000 * 109.49712 * 302.38247 * 11 10 9 30 30 H 1.08995 * 109.46089 * 299.16330 * 12 11 10 31 31 H 1.09000 * 109.45256 * 179.18504 * 12 11 10 32 32 H 1.08993 * 109.47164 * 289.99991 * 14 13 12 33 33 H 1.08996 * 109.46920 * 50.00025 * 14 13 12 34 34 H 1.09002 * 109.46936 * 299.99708 * 15 14 13 35 35 H 1.08996 * 109.47340 * 60.00144 * 15 14 13 36 36 H 1.08003 * 120.78327 * 359.97438 * 17 16 15 37 37 H 1.08004 * 120.42123 * 180.02562 * 18 17 16 38 38 H 1.07995 * 119.61971 * 179.97438 * 19 18 17 39 39 H 1.08003 * 119.61433 * 180.31219 * 21 20 19 40 40 H 1.09005 * 109.46314 * 181.76064 * 22 13 12 41 41 H 1.08998 * 109.46244 * 301.72632 * 22 13 12 42 42 H 1.09004 * 109.50441 * 180.87586 * 23 22 13 43 43 H 1.08999 * 109.50499 * 60.76414 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5475 -2.6399 0.1274 12 6 6.0566 -4.0818 0.0654 13 7 5.6517 -4.6908 -1.2079 14 6 6.2399 -6.0280 -1.3625 15 6 5.6061 -6.7280 -2.5664 16 6 6.2091 -8.1000 -2.7245 17 6 5.6424 -9.1937 -2.0877 18 6 6.2313 -10.4366 -2.2615 19 6 7.3562 -10.5435 -3.0576 20 7 7.8686 -9.4813 -3.6472 21 6 7.3319 -8.2846 -3.5085 22 6 4.1892 -4.7418 -1.3309 23 6 3.6244 -3.3196 -1.3106 24 1 -0.4850 0.8400 -0.0004 25 1 3.8745 -0.6802 0.8912 26 1 3.8752 -0.6804 -0.8888 27 1 3.5853 -3.1782 0.8403 28 1 5.8348 -2.1931 1.0792 29 1 5.9816 -2.0652 -0.6908 30 1 5.6329 -4.6523 0.8919 31 1 7.1440 -4.0864 0.1407 32 1 7.3145 -5.9363 -1.5198 33 1 6.0532 -6.6133 -0.4621 34 1 4.5314 -6.8198 -2.4090 35 1 5.7928 -6.1427 -3.4667 36 1 4.7636 -9.0798 -1.4704 37 1 5.8165 -11.3103 -1.7808 38 1 7.8212 -11.5081 -3.1977 39 1 7.7770 -7.4385 -4.0111 40 1 3.9203 -5.2260 -2.2697 41 1 3.7743 -5.3093 -0.4979 42 1 2.5377 -3.3585 -1.3863 43 1 4.0283 -2.7557 -2.1514 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259871206.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:07 Heat of formation + Delta-G solvation = -0.276255 kcal Electronic energy + Delta-G solvation = -20554.834286 eV Core-core repulsion = 17598.067200 eV Total energy + Delta-G solvation = -2956.767086 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.15576 -40.10317 -36.78270 -34.94672 -33.85749 -32.82708 -31.75435 -30.73478 -28.74721 -25.90475 -24.49613 -24.31678 -23.86707 -22.34531 -21.45477 -20.45406 -18.85998 -17.97713 -17.35382 -17.13312 -16.36185 -16.04644 -15.74327 -15.54189 -15.12895 -14.91066 -14.71998 -14.47554 -14.32357 -14.14209 -13.93842 -13.63579 -13.39149 -13.02046 -12.91864 -12.51470 -12.42777 -12.26443 -12.08249 -11.94057 -11.81886 -11.65873 -11.26412 -10.89739 -10.79834 -10.71911 -10.66552 -10.35869 -9.85317 -9.21221 -8.26000 -6.27903 0.18467 0.35633 1.36364 1.37580 1.49626 2.38068 2.82956 2.99688 3.09627 3.59394 3.87444 3.89914 3.99492 4.04573 4.06450 4.11198 4.12349 4.24045 4.37037 4.42378 4.58224 4.59805 4.61206 4.70308 4.75078 4.84043 4.90748 4.95729 5.01032 5.04971 5.13169 5.15739 5.22591 5.24773 5.35313 5.41243 5.43356 5.54294 5.72677 5.75806 5.81486 6.17792 6.22562 6.34885 6.79349 7.04900 7.35871 8.90674 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.042458 B = 0.002969 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.320194 B = 9428.259474 C = 9710.304167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.248 1.248 7 C -0.517 4.517 8 H 0.034 0.966 9 C -0.006 4.006 10 C -0.072 4.072 11 C -0.108 4.108 12 C 0.063 3.937 13 N -0.542 5.542 14 C 0.068 3.932 15 C -0.075 4.075 16 C -0.132 4.132 17 C -0.083 4.083 18 C -0.168 4.168 19 C 0.078 3.922 20 N -0.513 5.513 21 C 0.088 3.912 22 C 0.059 3.941 23 C -0.098 4.098 24 H 0.264 0.736 25 H 0.014 0.986 26 H 0.015 0.985 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.029 0.971 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.145 0.855 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.164 0.836 40 H 0.091 0.909 41 H 0.025 0.975 42 H 0.045 0.955 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.263 -18.898 -3.974 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.195 4.195 3 Si 0.771 3.229 4 H -0.194 1.194 5 H -0.212 1.212 6 H -0.171 1.171 7 C -0.555 4.555 8 H 0.053 0.947 9 C -0.043 4.043 10 C -0.090 4.090 11 C -0.146 4.146 12 C -0.064 4.064 13 N -0.267 5.267 14 C -0.059 4.059 15 C -0.113 4.113 16 C -0.134 4.134 17 C -0.109 4.109 18 C -0.188 4.188 19 C -0.078 4.078 20 N -0.222 5.222 21 C -0.068 4.068 22 C -0.068 4.068 23 C -0.136 4.136 24 H 0.073 0.927 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.061 0.939 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.047 0.953 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.163 0.837 37 H 0.178 0.822 38 H 0.192 0.808 39 H 0.181 0.819 40 H 0.109 0.891 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 17.060 -18.597 -4.863 25.701 hybrid contribution -1.540 0.540 1.262 2.063 sum 15.520 -18.057 -3.601 24.081 Atomic orbital electron populations 1.70069 1.08216 1.27907 1.53342 1.25994 0.95566 1.03381 0.94566 0.85702 0.79517 0.78622 0.79068 1.19365 1.21219 1.17128 1.21469 0.91999 0.92877 1.49201 0.94723 1.19573 0.93947 0.94822 0.95997 1.20979 0.95081 0.95981 0.96996 1.21636 0.94470 0.96535 1.01919 1.22048 1.00668 0.94490 0.89220 1.62019 1.09134 1.21184 1.34379 1.22060 0.99683 0.87561 0.96644 1.20649 1.00038 0.91102 0.99519 1.20917 0.97240 0.96635 0.98645 1.21837 0.99609 0.92383 0.97078 1.22452 0.97241 0.99092 0.99971 1.23217 0.93722 0.97895 0.93008 1.67705 1.32294 1.00141 1.22054 1.22931 0.92799 0.95096 0.95969 1.22169 0.87334 0.96299 1.01046 1.21446 0.99228 0.95439 0.97479 0.92716 0.96724 0.96711 0.93933 0.91284 0.91579 0.95300 0.89236 0.90017 0.95011 0.90178 0.89408 0.83676 0.82212 0.80752 0.81923 0.89056 0.95653 0.93621 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.42 13.96 21.45 0.30 -60.12 16 2 C 0.00 0.06 5.47 84.66 0.46 0.52 16 3 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 6 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 7 C -0.52 -29.81 9.00 25.60 0.23 -29.58 16 8 H 0.03 2.19 7.33 -2.91 -0.02 2.17 16 9 C -0.01 -0.28 3.52 29.85 0.11 -0.18 16 10 C -0.07 -2.77 2.20 -10.71 -0.02 -2.79 16 11 C -0.11 -3.27 5.38 30.65 0.16 -3.11 16 12 C 0.06 1.59 5.42 86.33 0.47 2.06 16 13 N -0.54 -13.39 4.81 -896.38 -4.31 -17.70 16 14 C 0.07 1.31 5.26 86.30 0.45 1.76 16 15 C -0.08 -1.28 4.62 29.85 0.14 -1.14 16 16 C -0.13 -2.24 5.15 -19.77 -0.10 -2.34 16 17 C -0.08 -1.25 9.86 22.46 0.22 -1.03 16 18 C -0.17 -2.20 10.11 22.36 0.23 -1.98 16 19 C 0.08 1.21 11.18 84.69 0.95 2.16 16 20 N -0.51 -10.42 10.36 -195.84 -2.03 -12.44 16 21 C 0.09 1.63 10.86 84.67 0.92 2.55 16 22 C 0.06 1.64 4.85 86.32 0.42 2.06 16 23 C -0.10 -3.57 5.15 30.64 0.16 -3.41 16 24 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 25 H 0.01 0.68 7.20 -2.39 -0.02 0.66 16 26 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.09 1.87 8.12 -2.39 -0.02 1.85 16 32 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.03 0.62 8.08 -2.39 -0.02 0.60 16 34 H 0.08 1.38 6.16 -2.39 -0.01 1.37 16 35 H 0.09 1.50 8.09 -2.39 -0.02 1.48 16 36 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 37 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 38 H 0.18 1.71 8.06 -2.91 -0.02 1.69 16 39 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 40 H 0.09 2.22 5.81 -2.38 -0.01 2.20 16 41 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.05 1.92 7.06 -2.38 -0.02 1.90 16 43 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -68.45 338.33 1.54 -66.92 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: 0.90 Total: 10.98 kcal Atomic # 6 Polarization: -39.26 SS G_CDS: 4.79 Total: -34.47 kcal Atomic # 7 Polarization: -84.23 SS G_CDS: -6.04 Total: -90.26 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -68.45 1.54 -66.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259871206.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.639 kcal (2) G-P(sol) polarization free energy of solvation -68.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds