Wall clock time and date at job start Mon Mar 30 2020 03:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48501 * 109.47332 * 270.00074 * 3 2 1 5 5 H 1.48503 * 109.47278 * 29.99635 * 3 2 1 6 6 H 1.48501 * 109.47490 * 150.00157 * 3 2 1 7 7 C 1.37877 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99758 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00467 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.50457 * 60.07710 * 9 7 2 11 11 C 1.53127 * 109.50110 * 300.00260 * 9 7 2 12 12 C 1.53117 * 109.15989 * 182.36245 * 11 9 7 13 13 C 1.53044 * 109.27792 * 57.65607 * 12 11 9 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 11 15 15 C 1.46901 * 111.00144 * 185.83239 * 14 13 12 16 16 C 1.53002 * 109.47055 * 66.04768 * 15 14 13 17 17 C 1.52994 * 109.47274 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47139 * 179.97438 * 17 16 15 19 19 C 1.38643 * 120.79243 * 269.72010 * 18 17 16 20 20 C 1.38202 * 119.16604 * 179.75498 * 19 18 17 21 21 N 1.31870 * 120.76203 * 0.53276 * 20 19 18 22 22 C 1.31875 * 121.72563 * 359.73739 * 21 20 19 23 23 C 1.38204 * 120.76283 * 359.97438 * 22 21 20 24 24 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 25 25 H 0.97004 * 119.99551 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52581 * 62.45879 * 11 9 7 27 27 H 1.08998 * 109.57452 * 302.29661 * 11 9 7 28 28 H 1.09001 * 109.50874 * 297.71787 * 12 11 9 29 29 H 1.09002 * 109.53469 * 177.60908 * 12 11 9 30 30 H 1.09002 * 109.46396 * 60.83566 * 13 12 11 31 31 H 1.08994 * 109.46485 * 180.81491 * 13 12 11 32 32 H 1.08999 * 109.47329 * 186.04739 * 15 14 13 33 33 H 1.08996 * 109.46902 * 306.05049 * 15 14 13 34 34 H 1.08999 * 109.47028 * 300.00156 * 16 15 14 35 35 H 1.09006 * 109.47128 * 59.99807 * 16 15 14 36 36 H 1.08999 * 109.47245 * 300.00054 * 17 16 15 37 37 H 1.08996 * 109.47225 * 59.99955 * 17 16 15 38 38 H 1.08005 * 120.41860 * 0.02562 * 19 18 17 39 39 H 1.07996 * 119.62454 * 180.25415 * 20 19 18 40 40 H 1.07998 * 119.62157 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.41757 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.46742 * 178.23410 * 24 14 13 43 43 H 1.09004 * 109.45381 * 58.25744 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 1 3.8750 -0.6814 0.8916 11 6 4.0231 -0.4727 -1.2489 12 6 5.5531 -0.5288 -1.2705 13 6 6.0057 -1.9904 -1.2377 14 7 5.4913 -2.6360 -0.0231 15 6 6.0197 -4.0000 0.1122 16 6 7.5309 -3.9409 0.3435 17 6 8.0812 -5.3614 0.4851 18 6 9.5698 -5.3032 0.7124 19 6 10.4525 -5.3286 -0.3565 20 6 11.8110 -5.2683 -0.1097 21 7 12.2698 -5.1981 1.1246 22 6 11.4601 -5.1775 2.1653 23 6 10.0894 -5.2287 1.9957 24 6 4.0232 -2.6364 -0.0028 25 1 -0.4850 0.8401 0.0004 26 1 3.6971 0.5672 -1.2285 27 1 3.6281 -0.9609 -2.1397 28 1 5.9489 -0.0057 -0.4000 29 1 5.9224 -0.0539 -2.1795 30 1 5.6211 -2.5095 -2.1156 31 1 7.0948 -2.0335 -1.2384 32 1 5.5415 -4.4926 0.9588 33 1 5.8133 -4.5615 -0.7989 34 1 8.0091 -3.4483 -0.5031 35 1 7.7373 -3.3792 1.2547 36 1 7.6029 -5.8536 1.3319 37 1 7.8748 -5.9235 -0.4257 38 1 10.0830 -5.3902 -1.3695 39 1 12.5050 -5.2834 -0.9369 40 1 11.8727 -5.1199 3.1617 41 1 9.4314 -5.2110 2.8519 42 1 3.6724 -3.1487 0.8930 43 1 3.6480 -3.1524 -0.8867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259872633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:34 Heat of formation + Delta-G solvation = 22.131244 kcal Electronic energy + Delta-G solvation = -20627.639777 eV Core-core repulsion = 17671.844353 eV Total energy + Delta-G solvation = -2955.795424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39661 -38.62424 -35.74859 -33.75816 -32.22362 -31.43515 -30.61741 -30.22583 -26.44769 -24.96664 -23.69518 -23.47463 -21.89926 -21.59882 -20.40633 -18.87039 -16.96404 -16.67188 -16.64438 -15.86152 -15.55228 -15.11471 -14.51941 -14.22539 -14.01264 -13.91811 -13.65070 -13.41872 -13.13344 -12.84698 -12.45843 -12.27688 -12.19408 -11.91492 -11.61491 -11.28723 -11.09584 -11.04900 -10.63276 -10.45217 -10.06936 -9.96232 -9.73885 -9.68840 -9.67695 -9.39981 -9.08039 -8.92391 -8.51224 -7.83565 -6.06830 -4.05891 0.89168 1.01369 3.28715 3.40071 3.43560 3.56520 4.19718 4.23147 4.42875 4.47531 4.48535 4.85601 4.88809 4.95993 5.15448 5.20122 5.25622 5.35985 5.40331 5.49850 5.52888 5.55519 5.62930 5.72702 5.81469 5.84505 5.95507 6.01911 6.13644 6.22189 6.24399 6.28516 6.32319 6.46815 6.49071 6.60789 6.80922 6.84114 7.20204 7.40934 7.60758 7.65581 7.73012 7.87000 8.52392 8.96268 9.56175 11.06460 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037513 B = 0.003139 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.230661 B = 8918.220237 C = 9097.274765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.888 3.112 4 H -0.280 1.280 5 H -0.299 1.299 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.072 0.928 9 C 0.020 3.980 10 H 0.035 0.965 11 C -0.122 4.122 12 C -0.120 4.120 13 C 0.061 3.939 14 N -0.543 5.543 15 C 0.056 3.944 16 C -0.109 4.109 17 C -0.084 4.084 18 C -0.031 4.031 19 C -0.173 4.173 20 C 0.097 3.903 21 N -0.494 5.494 22 C 0.098 3.902 23 C -0.171 4.171 24 C 0.077 3.923 25 H 0.263 0.737 26 H 0.046 0.954 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.027 0.973 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.028 0.972 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.154 0.846 40 H 0.154 0.846 41 H 0.135 0.865 42 H 0.066 0.934 43 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.316 -10.391 -0.124 22.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.053 0.947 11 C -0.160 4.160 12 C -0.158 4.158 13 C -0.067 4.067 14 N -0.267 5.267 15 C -0.072 4.072 16 C -0.147 4.147 17 C -0.122 4.122 18 C -0.039 4.039 19 C -0.192 4.192 20 C -0.059 4.059 21 N -0.203 5.203 22 C -0.059 4.059 23 C -0.190 4.190 24 C -0.049 4.049 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.151 0.849 39 H 0.171 0.829 40 H 0.171 0.829 41 H 0.153 0.847 42 H 0.085 0.915 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 21.205 -9.979 0.418 23.439 hybrid contribution -0.896 0.471 -0.961 1.396 sum 20.309 -9.508 -0.543 22.431 Atomic orbital electron populations 1.69901 1.06315 1.26930 1.50957 1.24984 0.94669 0.99067 0.94412 0.86820 0.80011 0.83439 0.77841 1.20747 1.22631 1.18815 1.21006 0.88820 0.94469 1.50967 0.90991 1.19157 0.95903 0.91164 0.93681 0.94688 1.22025 0.92638 1.00218 1.01117 1.21658 0.98096 0.95284 1.00763 1.22030 0.98607 0.95448 0.90586 1.61981 1.10297 1.16601 1.37817 1.22053 0.94361 0.90506 1.00302 1.21576 0.95403 0.94718 1.02971 1.20677 0.89738 0.98598 1.03189 1.20390 0.96543 0.93846 0.93091 1.22081 0.94505 1.02654 0.99999 1.22746 0.93739 0.95085 0.94348 1.67671 1.40467 1.12549 0.99614 1.22764 0.90125 0.95025 0.97952 1.22109 0.96893 1.02300 0.97733 1.22078 0.83543 0.99637 0.99677 0.92696 0.93578 0.92606 0.91868 0.92879 0.95524 0.91765 0.90894 0.95371 0.91795 0.90878 0.90277 0.90588 0.84878 0.82916 0.82851 0.84685 0.91515 0.95628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 2 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 3 Si 0.89 22.18 24.35 -169.99 -4.14 18.04 16 4 H -0.28 -6.82 6.89 56.52 0.39 -6.43 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 6 H -0.26 -6.35 6.53 56.52 0.37 -5.98 16 7 C -0.51 -14.37 9.15 -34.44 -0.32 -14.69 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.02 0.47 1.85 -91.69 -0.17 0.30 16 10 H 0.04 0.87 7.21 -51.93 -0.37 0.50 16 11 C -0.12 -2.65 4.73 -26.61 -0.13 -2.77 16 12 C -0.12 -2.12 6.09 -26.65 -0.16 -2.28 16 13 C 0.06 0.97 5.29 -3.83 -0.02 0.95 16 14 N -0.54 -9.09 4.65 -234.68 -1.09 -10.18 16 15 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 16 C -0.11 -1.17 5.13 -26.73 -0.14 -1.30 16 17 C -0.08 -0.72 5.39 -27.88 -0.15 -0.87 16 18 C -0.03 -0.28 5.17 -104.32 -0.54 -0.82 16 19 C -0.17 -1.50 9.82 -39.45 -0.39 -1.89 16 20 C 0.10 0.90 11.18 -17.55 -0.20 0.70 16 21 N -0.49 -5.33 10.36 -13.25 -0.14 -5.47 16 22 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 23 C -0.17 -1.51 9.82 -39.44 -0.39 -1.90 16 24 C 0.08 1.55 4.68 -3.84 -0.02 1.53 16 25 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 26 H 0.05 1.06 3.34 -51.93 -0.17 0.88 16 27 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.88 6.22 -51.93 -0.32 0.55 16 32 H 0.07 0.93 7.98 -51.93 -0.41 0.51 16 33 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 34 H 0.06 0.70 6.44 -51.93 -0.33 0.37 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.13 0.92 8.06 -52.48 -0.42 0.49 16 39 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 40 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.14 0.96 8.06 -52.48 -0.42 0.54 16 42 H 0.07 1.33 8.01 -51.93 -0.42 0.91 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 334.66 15.07 5.04 5.04 Total: -1.00 -31.35 334.66 -9.60 -40.95 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -7.13 Total: -1.78 kcal Atomic # 6 Polarization: -16.77 SS G_CDS: -2.92 Total: -19.69 kcal Atomic # 7 Polarization: -42.10 SS G_CDS: -0.46 Total: -42.56 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.35 -9.60 -40.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.079 kcal (2) G-P(sol) polarization free energy of solvation -31.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds