Wall clock time and date at job start Mon Mar 30 2020 03:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86795 * 120.00297 * 2 1 4 4 H 1.48501 * 109.47332 * 270.00074 * 3 2 1 5 5 H 1.48503 * 109.47278 * 29.99635 * 3 2 1 6 6 H 1.48501 * 109.47490 * 150.00157 * 3 2 1 7 7 C 1.37877 * 120.00087 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99758 * 0.02562 * 7 2 1 9 9 C 1.50694 * 120.00467 * 180.02562 * 7 2 1 10 10 H 1.08997 * 109.50457 * 60.07710 * 9 7 2 11 11 C 1.53127 * 109.50110 * 300.00260 * 9 7 2 12 12 C 1.53117 * 109.15989 * 182.36245 * 11 9 7 13 13 C 1.53044 * 109.27792 * 57.65607 * 12 11 9 14 14 N 1.46847 * 109.51335 * 300.82256 * 13 12 11 15 15 C 1.46901 * 111.00144 * 185.83239 * 14 13 12 16 16 C 1.53002 * 109.47055 * 66.04768 * 15 14 13 17 17 C 1.52994 * 109.47274 * 179.97438 * 16 15 14 18 18 C 1.50704 * 109.47139 * 179.97438 * 17 16 15 19 19 C 1.38643 * 120.79243 * 269.72010 * 18 17 16 20 20 C 1.38202 * 119.16604 * 179.75498 * 19 18 17 21 21 N 1.31870 * 120.76203 * 0.53276 * 20 19 18 22 22 C 1.31875 * 121.72563 * 359.73739 * 21 20 19 23 23 C 1.38204 * 120.76283 * 359.97438 * 22 21 20 24 24 C 1.46830 * 111.21086 * 61.74856 * 14 13 12 25 25 H 0.97004 * 119.99551 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.52581 * 62.45879 * 11 9 7 27 27 H 1.08998 * 109.57452 * 302.29661 * 11 9 7 28 28 H 1.09001 * 109.50874 * 297.71787 * 12 11 9 29 29 H 1.09002 * 109.53469 * 177.60908 * 12 11 9 30 30 H 1.09002 * 109.46396 * 60.83566 * 13 12 11 31 31 H 1.08994 * 109.46485 * 180.81491 * 13 12 11 32 32 H 1.08999 * 109.47329 * 186.04739 * 15 14 13 33 33 H 1.08996 * 109.46902 * 306.05049 * 15 14 13 34 34 H 1.08999 * 109.47028 * 300.00156 * 16 15 14 35 35 H 1.09006 * 109.47128 * 59.99807 * 16 15 14 36 36 H 1.08999 * 109.47245 * 300.00054 * 17 16 15 37 37 H 1.08996 * 109.47225 * 59.99955 * 17 16 15 38 38 H 1.08005 * 120.41860 * 0.02562 * 19 18 17 39 39 H 1.07996 * 119.62454 * 180.25415 * 20 19 18 40 40 H 1.07998 * 119.62157 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.41757 * 180.02562 * 23 22 21 42 42 H 1.08995 * 109.46742 * 178.23410 * 24 14 13 43 43 H 1.09004 * 109.45381 * 58.25744 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5114 -1.1941 0.0011 10 1 3.8750 -0.6814 0.8916 11 6 4.0231 -0.4727 -1.2489 12 6 5.5531 -0.5288 -1.2705 13 6 6.0057 -1.9904 -1.2377 14 7 5.4913 -2.6360 -0.0231 15 6 6.0197 -4.0000 0.1122 16 6 7.5309 -3.9409 0.3435 17 6 8.0812 -5.3614 0.4851 18 6 9.5698 -5.3032 0.7124 19 6 10.4525 -5.3286 -0.3565 20 6 11.8110 -5.2683 -0.1097 21 7 12.2698 -5.1981 1.1246 22 6 11.4601 -5.1775 2.1653 23 6 10.0894 -5.2287 1.9957 24 6 4.0232 -2.6364 -0.0028 25 1 -0.4850 0.8401 0.0004 26 1 3.6971 0.5672 -1.2285 27 1 3.6281 -0.9609 -2.1397 28 1 5.9489 -0.0057 -0.4000 29 1 5.9224 -0.0539 -2.1795 30 1 5.6211 -2.5095 -2.1156 31 1 7.0948 -2.0335 -1.2384 32 1 5.5415 -4.4926 0.9588 33 1 5.8133 -4.5615 -0.7989 34 1 8.0091 -3.4483 -0.5031 35 1 7.7373 -3.3792 1.2547 36 1 7.6029 -5.8536 1.3319 37 1 7.8748 -5.9235 -0.4257 38 1 10.0830 -5.3902 -1.3695 39 1 12.5050 -5.2834 -0.9369 40 1 11.8727 -5.1199 3.1617 41 1 9.4314 -5.2110 2.8519 42 1 3.6724 -3.1487 0.8930 43 1 3.6480 -3.1524 -0.8867 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259872633.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:31 Heat of formation + Delta-G solvation = 2.547268 kcal Electronic energy + Delta-G solvation = -20628.489001 eV Core-core repulsion = 17671.844353 eV Total energy + Delta-G solvation = -2956.644649 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.05114 -40.02829 -36.79971 -35.21145 -33.92205 -32.06056 -32.02210 -31.53769 -27.49657 -26.81304 -24.67780 -24.33069 -23.31334 -22.56494 -21.55449 -20.49467 -18.83313 -17.63144 -17.35441 -17.08866 -16.43144 -16.16574 -16.01106 -15.58738 -15.28758 -14.87090 -14.81388 -14.70320 -14.41042 -14.22769 -13.83572 -13.65999 -13.08231 -13.04891 -12.88321 -12.67153 -12.42451 -12.32563 -12.05901 -11.90083 -11.73593 -11.48135 -11.41603 -11.00815 -10.76016 -10.61865 -10.41510 -10.35008 -10.03343 -9.16123 -8.30978 -6.34279 0.25917 0.34703 1.29448 1.35987 1.47137 2.32411 2.87623 3.05014 3.06794 3.63082 3.71304 3.86435 4.02588 4.05127 4.16228 4.24313 4.25381 4.30717 4.40362 4.45095 4.49808 4.57693 4.67244 4.72908 4.76208 4.81946 4.82901 4.91268 4.95160 4.99004 5.07422 5.14880 5.15506 5.17182 5.26738 5.38850 5.45360 5.53754 5.64301 5.73426 5.85346 6.17501 6.31842 6.37205 6.73421 7.08151 7.31593 8.85927 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.037513 B = 0.003139 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.230661 B = 8918.220237 C = 9097.274765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.300 1.300 6 H -0.248 1.248 7 C -0.519 4.519 8 H 0.033 0.967 9 C 0.020 3.980 10 H 0.024 0.976 11 C -0.123 4.123 12 C -0.116 4.116 13 C 0.061 3.939 14 N -0.550 5.550 15 C 0.055 3.945 16 C -0.096 4.096 17 C -0.076 4.076 18 C -0.041 4.041 19 C -0.175 4.175 20 C 0.085 3.915 21 N -0.522 5.522 22 C 0.085 3.915 23 C -0.176 4.176 24 C 0.089 3.911 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.048 0.952 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.029 0.971 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.036 0.964 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.173 0.827 40 H 0.171 0.829 41 H 0.149 0.851 42 H 0.059 0.941 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.029 -10.318 -0.734 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.228 1.228 6 H -0.172 1.172 7 C -0.558 4.558 8 H 0.051 0.949 9 C 0.000 4.000 10 H 0.042 0.958 11 C -0.160 4.160 12 C -0.153 4.153 13 C -0.066 4.066 14 N -0.274 5.274 15 C -0.072 4.072 16 C -0.134 4.134 17 C -0.113 4.113 18 C -0.049 4.049 19 C -0.194 4.194 20 C -0.071 4.071 21 N -0.232 5.232 22 C -0.071 4.071 23 C -0.196 4.196 24 C -0.039 4.039 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.080 0.920 29 H 0.099 0.901 30 H 0.047 0.953 31 H 0.113 0.887 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.170 0.830 39 H 0.190 0.810 40 H 0.188 0.812 41 H 0.167 0.833 42 H 0.078 0.922 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 23.947 -9.928 -0.195 25.924 hybrid contribution -1.777 0.340 -0.755 1.960 sum 22.170 -9.589 -0.951 24.174 Atomic orbital electron populations 1.70047 1.08180 1.27994 1.52906 1.25843 0.95396 1.02972 0.94225 0.85790 0.79056 0.78659 0.78592 1.19337 1.22768 1.17244 1.21352 0.91551 0.92966 1.49905 0.94868 1.19070 0.92816 0.93776 0.94289 0.95820 1.21925 0.95979 0.98772 0.99357 1.21642 0.94564 0.96967 1.02176 1.22100 1.00314 0.94080 0.90109 1.61934 1.07710 1.19106 1.38652 1.22147 0.95854 0.88463 1.00744 1.21437 0.93394 0.96062 1.02549 1.20593 0.89339 0.97303 1.04110 1.20534 0.96820 0.94169 0.93394 1.22318 0.94281 1.01951 1.00872 1.23142 0.94609 0.94872 0.94491 1.67684 1.41448 1.13527 1.00517 1.23119 0.90493 0.94960 0.98551 1.22327 0.97001 1.01883 0.98349 1.21763 0.86187 0.97012 0.98940 0.92573 0.94834 0.93353 0.91980 0.90057 0.95308 0.88680 0.90833 0.94593 0.91541 0.91794 0.89600 0.89485 0.83016 0.81029 0.81170 0.83288 0.92250 0.96597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 2 C 0.01 0.74 5.45 84.66 0.46 1.20 16 3 Si 0.95 45.91 24.35 68.60 1.67 47.58 16 4 H -0.27 -12.24 6.89 99.48 0.69 -11.55 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 6 H -0.25 -11.27 6.53 99.48 0.65 -10.62 16 7 C -0.52 -29.90 9.15 25.60 0.23 -29.67 16 8 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 9 C 0.02 0.92 1.85 -11.49 -0.02 0.90 16 10 H 0.02 1.16 7.21 -2.39 -0.02 1.14 16 11 C -0.12 -5.12 4.73 30.68 0.15 -4.98 16 12 C -0.12 -3.70 6.09 30.65 0.19 -3.51 16 13 C 0.06 1.73 5.29 86.33 0.46 2.19 16 14 N -0.55 -17.20 4.65 -896.40 -4.17 -21.37 16 15 C 0.06 1.31 4.96 86.30 0.43 1.73 16 16 C -0.10 -1.76 5.13 30.59 0.16 -1.60 16 17 C -0.08 -1.07 5.39 29.85 0.16 -0.91 16 18 C -0.04 -0.64 5.17 -19.67 -0.10 -0.75 16 19 C -0.17 -2.59 9.82 22.36 0.22 -2.37 16 20 C 0.09 1.40 11.18 84.68 0.95 2.35 16 21 N -0.52 -10.57 10.36 -195.85 -2.03 -12.60 16 22 C 0.08 1.45 11.18 84.68 0.95 2.40 16 23 C -0.18 -2.76 9.82 22.36 0.22 -2.54 16 24 C 0.09 3.51 4.68 86.33 0.40 3.92 16 25 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 26 H 0.03 1.47 3.34 -2.39 -0.01 1.46 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.10 2.15 6.22 -2.39 -0.01 2.14 16 32 H 0.07 1.72 7.98 -2.39 -0.02 1.70 16 33 H 0.04 0.81 8.12 -2.39 -0.02 0.79 16 34 H 0.07 1.19 6.44 -2.39 -0.02 1.18 16 35 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 36 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.09 1.06 8.10 -2.39 -0.02 1.04 16 38 H 0.15 1.59 8.06 -2.91 -0.02 1.56 16 39 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.17 2.07 8.06 -2.91 -0.02 2.05 16 41 H 0.15 1.80 8.06 -2.91 -0.02 1.78 16 42 H 0.06 2.39 8.01 -2.39 -0.02 2.37 16 43 H 0.02 0.65 8.14 -2.38 -0.02 0.63 16 Total: -1.00 -69.07 334.66 1.50 -67.57 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 0.89 Total: 10.25 kcal Atomic # 6 Polarization: -36.48 SS G_CDS: 4.84 Total: -31.64 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -5.90 Total: -93.76 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.67 Total: 47.58 kcal Total: -69.07 1.50 -67.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259872633.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.118 kcal (2) G-P(sol) polarization free energy of solvation -69.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds