Wall clock time and date at job start Mon Mar 30 2020 03:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99622 * 2 1 4 4 H 1.48498 * 109.47201 * 269.99621 * 3 2 1 5 5 H 1.48500 * 109.47238 * 30.00355 * 3 2 1 6 6 H 1.48499 * 109.47066 * 150.00140 * 3 2 1 7 7 C 1.37877 * 120.00086 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99775 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99854 * 0.02562 * 7 2 1 10 10 C 1.53120 * 109.52064 * 180.02562 * 9 7 2 11 11 C 1.53033 * 109.27903 * 177.62126 * 10 9 7 12 12 N 1.46848 * 109.52176 * 300.81571 * 11 10 9 13 13 C 1.46906 * 110.99843 * 185.83803 * 12 11 10 14 14 C 1.53002 * 109.46782 * 170.00061 * 13 12 11 15 15 C 1.52995 * 109.46875 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47285 * 179.97438 * 15 14 13 17 17 C 1.38675 * 120.41529 * 89.99913 * 16 15 14 18 18 C 1.38631 * 118.41792 * 179.97438 * 17 16 15 19 19 C 1.38221 * 119.16077 * 0.25627 * 18 17 16 20 20 N 1.31860 * 120.76509 * 359.49797 * 19 18 17 21 21 C 1.31882 * 121.72556 * 0.49011 * 20 19 18 22 22 C 1.46846 * 111.19655 * 61.74545 * 12 11 10 23 23 C 1.53036 * 109.52018 * 298.25382 * 22 12 11 24 24 H 0.97001 * 120.00165 * 359.97438 * 1 2 3 25 25 H 1.08991 * 109.52684 * 59.87113 * 9 7 2 26 26 H 1.09000 * 109.50559 * 57.67436 * 10 9 7 27 27 H 1.09005 * 109.50292 * 297.55991 * 10 9 7 28 28 H 1.09005 * 109.46279 * 180.79973 * 11 10 9 29 29 H 1.09004 * 109.45676 * 60.82924 * 11 10 9 30 30 H 1.09003 * 109.46972 * 50.00238 * 13 12 11 31 31 H 1.09001 * 109.46946 * 290.00000 * 13 12 11 32 32 H 1.08995 * 109.47078 * 60.00095 * 14 13 12 33 33 H 1.09001 * 109.47331 * 299.99704 * 14 13 12 34 34 H 1.09008 * 109.47427 * 59.99953 * 15 14 13 35 35 H 1.08998 * 109.47562 * 299.99860 * 15 14 13 36 36 H 1.07998 * 120.79161 * 359.96013 * 17 16 15 37 37 H 1.08002 * 120.41548 * 179.97438 * 18 17 16 38 38 H 1.08002 * 119.62066 * 179.74470 * 19 18 17 39 39 H 1.07993 * 119.62126 * 179.75488 * 21 20 19 40 40 H 1.08999 * 109.46542 * 58.27122 * 22 12 11 41 41 H 1.09002 * 109.46346 * 178.24407 * 22 12 11 42 42 H 1.08994 * 109.50812 * 299.23877 * 23 22 12 43 43 H 1.09005 * 109.49939 * 179.12250 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2450 -3.6638 -0.0015 11 6 1.4752 -4.9851 0.0573 12 7 0.6525 -5.0200 1.2732 13 6 0.0061 -6.3294 1.4340 14 6 -0.6335 -6.4154 2.8213 15 6 -1.3063 -7.7792 2.9889 16 6 -1.9357 -7.8643 4.3556 17 6 -3.2465 -7.4562 4.5514 18 6 -3.7843 -7.5530 5.8255 19 6 -2.9999 -8.0445 6.8520 20 7 -1.7583 -8.4277 6.6280 21 6 -1.2142 -8.3503 5.4292 22 6 -0.3413 -3.9389 1.2732 23 6 0.3744 -2.5864 1.2507 24 1 -0.4850 0.8400 0.0004 25 1 0.6227 -2.5562 -0.8904 26 1 2.8985 -3.5844 0.8673 27 1 2.8436 -3.6316 -0.9119 28 1 2.1805 -5.8160 0.0720 29 1 0.8322 -5.0699 -0.8188 30 1 0.7511 -7.1179 1.3278 31 1 -0.7630 -6.4509 0.6711 32 1 -1.3785 -5.6269 2.9274 33 1 0.1355 -6.2938 3.5841 34 1 -0.5609 -8.5676 2.8829 35 1 -2.0752 -7.9014 2.2262 36 1 -3.8344 -7.0719 3.7310 37 1 -4.8017 -7.2439 6.0145 38 1 -3.4100 -8.1192 7.8484 39 1 -0.1929 -8.6702 5.2849 40 1 -0.9757 -4.0288 0.3914 41 1 -0.9553 -4.0100 2.1710 42 1 0.9984 -2.4900 2.1392 43 1 -0.3637 -1.7844 1.2349 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260098812.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:05 Heat of formation + Delta-G solvation = -2.065830 kcal Electronic energy + Delta-G solvation = -20561.644392 eV Core-core repulsion = 17604.799704 eV Total energy + Delta-G solvation = -2956.844688 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07180 -39.86792 -36.68191 -35.19098 -33.45055 -32.80323 -31.46938 -30.97264 -28.01145 -26.19653 -24.45933 -24.12277 -23.63634 -22.52066 -21.57791 -20.34254 -18.44687 -17.96350 -17.35829 -16.94656 -16.42514 -16.07202 -15.87615 -15.38428 -15.02259 -14.81830 -14.57431 -14.45554 -14.14942 -14.09834 -13.91192 -13.35226 -13.15617 -12.89823 -12.77172 -12.62693 -12.45732 -12.38077 -11.97724 -11.90932 -11.84337 -11.61565 -11.24943 -10.79542 -10.68451 -10.60335 -10.37304 -10.34374 -9.82878 -9.13791 -8.07997 -6.21285 0.21230 0.38087 1.40459 1.41434 1.51735 2.43699 2.86638 3.10266 3.18912 3.59317 3.83826 3.93524 4.08789 4.12414 4.20567 4.21306 4.30155 4.40276 4.44025 4.51561 4.57139 4.65735 4.75895 4.78146 4.83402 4.88241 4.92728 4.98041 5.03467 5.08652 5.20082 5.24449 5.24931 5.35153 5.43062 5.48535 5.57605 5.63428 5.84054 6.01322 6.04563 6.32702 6.40024 6.41793 6.90464 7.06474 7.46380 8.96498 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.026583 B = 0.003184 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.062233 B = 8792.034133 C = 9359.021666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.044 3.956 10 C -0.101 4.101 11 C 0.066 3.934 12 N -0.546 5.546 13 C 0.056 3.944 14 C -0.102 4.102 15 C -0.066 4.066 16 C -0.133 4.133 17 C -0.085 4.085 18 C -0.170 4.170 19 C 0.074 3.926 20 N -0.515 5.515 21 C 0.084 3.916 22 C 0.070 3.930 23 C -0.096 4.096 24 H 0.260 0.740 25 H -0.013 1.013 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.021 0.979 30 H 0.089 0.911 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.164 0.836 40 H 0.012 0.988 41 H 0.072 0.928 42 H 0.027 0.973 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.776 -17.809 7.783 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.025 3.975 10 C -0.139 4.139 11 C -0.061 4.061 12 N -0.271 5.271 13 C -0.071 4.071 14 C -0.140 4.140 15 C -0.104 4.104 16 C -0.135 4.135 17 C -0.111 4.111 18 C -0.190 4.190 19 C -0.082 4.082 20 N -0.224 5.224 21 C -0.072 4.072 22 C -0.058 4.058 23 C -0.134 4.134 24 H 0.069 0.931 25 H 0.005 0.995 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.039 0.961 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.191 0.809 39 H 0.181 0.819 40 H 0.031 0.969 41 H 0.090 0.910 42 H 0.046 0.954 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.109 -17.946 8.878 20.934 hybrid contribution -0.728 1.579 -1.454 2.266 sum -6.837 -16.368 7.424 19.229 Atomic orbital electron populations 1.70015 1.07126 1.27011 1.51591 1.25748 0.95708 1.02356 0.94895 0.85635 0.78774 0.79537 0.78188 1.20151 1.20862 1.19400 1.21601 0.92981 0.92339 1.50247 0.93171 1.18657 0.93183 0.92663 0.92970 1.21552 0.97989 0.94218 1.00108 1.22041 0.96020 0.98219 0.89837 1.61941 1.23534 1.03470 1.38105 1.22178 0.97719 0.90573 0.96647 1.21483 0.99342 0.96589 0.96566 1.20472 1.00384 0.97485 0.92062 1.21068 0.95288 0.99466 0.97711 1.21873 0.94887 0.96021 0.98347 1.22460 1.02631 1.00447 0.93436 1.23189 0.89554 0.94724 1.00751 1.67676 1.13804 1.16495 1.24388 1.22950 1.00502 0.96195 0.87600 1.22035 0.93066 0.91763 0.98952 1.21421 0.99125 0.94886 0.98006 0.93116 0.99461 0.93178 0.92865 0.89221 0.96118 0.89237 0.94939 0.93016 0.91993 0.89004 0.89776 0.83406 0.82316 0.80915 0.81877 0.96927 0.90955 0.95365 0.92253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.81 11.37 21.45 0.24 -53.56 16 2 C 0.01 0.63 5.31 84.66 0.45 1.08 16 3 Si 0.95 44.39 29.54 68.60 2.03 46.41 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.53 -30.21 8.56 25.60 0.22 -29.99 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.04 2.25 2.16 -11.46 -0.02 2.23 16 10 C -0.10 -4.25 5.32 30.65 0.16 -4.08 16 11 C 0.07 2.27 5.46 86.32 0.47 2.74 16 12 N -0.55 -18.34 4.66 -896.33 -4.17 -22.51 16 13 C 0.06 1.37 4.96 86.30 0.43 1.80 16 14 C -0.10 -2.23 5.13 30.59 0.16 -2.07 16 15 C -0.07 -1.05 5.37 29.85 0.16 -0.89 16 16 C -0.13 -2.47 5.15 -19.77 -0.10 -2.57 16 17 C -0.09 -1.46 9.86 22.47 0.22 -1.23 16 18 C -0.17 -2.66 10.11 22.36 0.23 -2.44 16 19 C 0.07 1.35 11.18 84.68 0.95 2.30 16 20 N -0.51 -11.74 10.36 -195.85 -2.03 -13.77 16 21 C 0.08 1.72 10.86 84.67 0.92 2.64 16 22 C 0.07 2.71 5.29 86.33 0.46 3.17 16 23 C -0.10 -4.69 5.12 30.65 0.16 -4.53 16 24 H 0.26 14.48 8.31 -92.71 -0.77 13.70 16 25 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 26 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 28 H 0.09 2.52 8.02 -2.38 -0.02 2.50 16 29 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 1.84 7.99 -2.39 -0.02 1.82 16 31 H 0.03 0.78 8.12 -2.39 -0.02 0.76 16 32 H 0.05 1.27 6.43 -2.39 -0.02 1.26 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.09 1.21 8.09 -2.38 -0.02 1.19 16 35 H 0.08 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 37 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16 38 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.07 2.58 6.21 -2.39 -0.01 2.56 16 42 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.06 3.26 6.17 -2.38 -0.01 3.25 16 Total: -1.00 -65.71 341.50 1.87 -63.84 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.96 Total: 11.45 kcal Atomic # 6 Polarization: -36.70 SS G_CDS: 4.85 Total: -31.85 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -5.96 Total: -89.85 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -65.71 1.87 -63.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260098812.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.770 kcal (2) G-P(sol) polarization free energy of solvation -65.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds