Wall clock time and date at job start Mon Mar 30 2020 03:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48502 * 109.47518 * 240.00145 * 3 2 1 5 5 H 1.48505 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47117 * 120.00134 * 3 2 1 7 7 C 1.37878 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46806 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46975 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99821 * 180.02562 * 11 10 9 13 13 C 1.53126 * 109.52017 * 204.99839 * 12 11 10 14 14 C 1.53032 * 109.27823 * 182.37465 * 13 12 11 15 15 N 1.46855 * 109.52274 * 59.17835 * 14 13 12 16 16 C 1.39676 * 110.99902 * 174.15844 * 15 14 13 17 17 C 1.38906 * 120.07135 * 179.97438 * 16 15 14 18 18 C 1.38111 * 119.92343 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.07382 * 0.28047 * 18 17 16 20 20 C 1.38286 * 120.14755 * 359.44532 * 19 18 17 21 21 C 1.38112 * 120.07587 * 0.55318 * 20 19 18 22 22 C 1.46847 * 111.19708 * 298.25795 * 15 14 13 23 23 C 1.53038 * 109.52090 * 61.74195 * 22 15 14 24 24 H 0.97002 * 119.99934 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47333 * 60.00249 * 9 7 2 26 26 H 1.08999 * 109.47009 * 299.99423 * 9 7 2 27 27 H 1.09000 * 109.47540 * 59.99443 * 10 9 7 28 28 H 1.08994 * 109.47169 * 299.99741 * 10 9 7 29 29 H 1.00900 * 110.99812 * 303.94821 * 11 10 9 30 30 H 1.09000 * 109.52125 * 325.12133 * 12 11 10 31 31 H 1.09003 * 109.50469 * 62.43469 * 13 12 11 32 32 H 1.09002 * 109.53631 * 302.33491 * 13 12 11 33 33 H 1.09002 * 109.46522 * 299.16950 * 14 13 12 34 34 H 1.09003 * 109.45639 * 179.19032 * 14 13 12 35 35 H 1.07999 * 120.03932 * 0.04675 * 17 16 15 36 36 H 1.08002 * 119.96028 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.92357 * 179.69823 * 19 18 17 38 38 H 1.08002 * 119.96005 * 180.25011 * 20 19 18 39 39 H 1.07998 * 120.03717 * 179.70130 * 21 20 19 40 40 H 1.08996 * 109.46146 * 181.75541 * 22 15 14 41 41 H 1.08997 * 109.46277 * 301.72638 * 22 15 14 42 42 H 1.09006 * 109.49692 * 180.87572 * 23 22 15 43 43 H 1.08998 * 109.50600 * 60.76251 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5108 -4.9342 -0.0020 12 6 2.4353 -6.0759 -0.0011 13 6 1.7413 -7.2967 -0.6115 14 6 2.6882 -8.4975 -0.5539 15 7 3.0542 -8.7673 0.8425 16 6 3.8119 -9.9363 0.9445 17 6 4.2604 -10.3689 2.1859 18 6 5.0099 -11.5249 2.2831 19 6 5.3186 -12.2484 1.1457 20 6 4.8688 -11.8235 -0.0910 21 6 4.1190 -10.6684 -0.1954 22 6 3.7640 -7.6267 1.4353 23 6 2.8492 -6.3999 1.4370 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5575 0.8881 27 1 2.8714 -3.6047 0.8890 28 1 2.8726 -3.6039 -0.8909 29 1 0.8741 -4.9845 0.7792 30 1 3.3200 -5.8285 -0.5879 31 1 1.4823 -7.0871 -1.6494 32 1 0.8353 -7.5204 -0.0484 33 1 3.5878 -8.2787 -1.1292 34 1 2.1918 -9.3720 -0.9747 35 1 4.0232 -9.8022 3.0741 36 1 5.3593 -11.8616 3.2480 37 1 5.9089 -13.1494 1.2240 38 1 5.1084 -12.3930 -0.9768 39 1 3.7721 -10.3346 -1.1621 40 1 4.0490 -7.8686 2.4592 41 1 4.6585 -7.4119 0.8506 42 1 3.3818 -5.5494 1.8628 43 1 1.9609 -6.6091 2.0329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273239520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:40 Heat of formation + Delta-G solvation = 21.614759 kcal Electronic energy + Delta-G solvation = -20470.218331 eV Core-core repulsion = 17514.400511 eV Total energy + Delta-G solvation = -2955.817820 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.52785 -38.28313 -35.91582 -33.41401 -31.92199 -31.74009 -30.50127 -29.45559 -27.77738 -24.64167 -23.99662 -23.00568 -21.78536 -21.28912 -20.71407 -19.64057 -17.89190 -16.33836 -16.02644 -15.62133 -15.42602 -14.70450 -14.58317 -14.45430 -14.24735 -13.87972 -13.71215 -13.59765 -13.25601 -12.80054 -12.48804 -12.20853 -12.16525 -11.64724 -11.41492 -11.26316 -11.24422 -11.12637 -10.93130 -10.68773 -10.61634 -10.40498 -9.98751 -9.85329 -9.34560 -9.15792 -9.13903 -8.35330 -7.98965 -7.78704 -5.99735 -4.02508 1.18686 1.20185 3.33031 3.37484 3.39707 3.42139 3.73145 4.40487 4.53066 4.67251 4.71867 4.77801 4.86268 4.93610 5.06831 5.13116 5.21740 5.24008 5.35764 5.36024 5.43217 5.49069 5.62648 5.67141 5.69717 5.77271 5.89484 6.00700 6.11443 6.21038 6.23544 6.32324 6.35157 6.37447 6.45590 6.59770 6.87665 6.97459 7.14842 7.49304 7.73011 7.82711 7.96186 8.08667 8.43382 9.04595 9.61177 11.11625 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.046517 B = 0.002712 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.784698 B =10321.563690 C =10539.229817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.025 3.975 10 C 0.066 3.934 11 N -0.685 5.685 12 C 0.085 3.915 13 C -0.105 4.105 14 C 0.052 3.948 15 N -0.489 5.489 16 C 0.118 3.882 17 C -0.144 4.144 18 C -0.096 4.096 19 C -0.154 4.154 20 C -0.094 4.094 21 C -0.174 4.174 22 C 0.065 3.935 23 C -0.149 4.149 24 H 0.261 0.739 25 H 0.025 0.975 26 H 0.013 0.987 27 H 0.015 0.985 28 H 0.056 0.944 29 H 0.338 0.662 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.045 0.955 34 H 0.081 0.919 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 -23.671 2.177 25.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.071 0.929 9 C -0.012 4.012 10 C -0.062 4.062 11 N -0.315 5.315 12 C -0.026 4.026 13 C -0.144 4.144 14 C -0.075 4.075 15 N -0.204 5.204 16 C 0.020 3.980 17 C -0.165 4.165 18 C -0.115 4.115 19 C -0.173 4.173 20 C -0.113 4.113 21 C -0.195 4.195 22 C -0.060 4.060 23 C -0.188 4.188 24 H 0.071 0.929 25 H 0.043 0.957 26 H 0.032 0.968 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.100 0.900 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 8.389 -23.489 1.738 25.003 hybrid contribution 1.390 1.034 0.582 1.827 sum 9.778 -22.455 2.320 24.601 Atomic orbital electron populations 1.69964 1.06023 1.26707 1.50528 1.25005 0.94850 0.99207 0.95303 0.86649 0.79565 0.83132 0.78579 1.20228 1.21255 1.20307 1.21137 0.92911 0.91060 1.51032 0.92867 1.19062 0.94023 0.90429 0.97693 1.22179 0.96984 0.88547 0.98472 1.60680 1.19185 1.01855 1.49730 1.21616 0.95416 0.91574 0.93970 1.21609 0.98334 0.92288 1.02142 1.22325 0.98992 0.99353 0.86813 1.59010 1.39969 1.02244 1.19134 1.19052 0.92339 0.92911 0.93701 1.20822 1.01238 0.98146 0.96246 1.21009 0.97424 0.94529 0.98492 1.21045 1.02600 1.00834 0.92803 1.21006 0.96849 0.95833 0.97594 1.21361 1.02228 0.98120 0.97821 1.22167 0.94979 0.89242 0.99649 1.22414 1.00364 0.96532 0.99526 0.92923 0.95683 0.96833 0.96676 0.92510 0.84457 0.91112 0.90372 0.90980 0.93709 0.90018 0.85837 0.86073 0.86398 0.86214 0.85512 0.90293 0.93887 0.90921 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.88 9.11 -34.44 -0.31 -15.20 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.66 5.23 -27.88 -0.15 0.52 16 10 C 0.07 1.38 5.42 -3.82 -0.02 1.36 16 11 N -0.69 -11.99 6.26 -106.59 -0.67 -12.65 16 12 C 0.09 1.20 2.53 -67.59 -0.17 1.03 16 13 C -0.11 -1.29 5.70 -26.65 -0.15 -1.44 16 14 C 0.05 0.56 4.15 -3.83 -0.02 0.54 16 15 N -0.49 -5.56 4.70 -171.15 -0.80 -6.36 16 16 C 0.12 1.30 5.64 -83.79 -0.47 0.83 16 17 C -0.14 -1.46 9.16 -39.38 -0.36 -1.82 16 18 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 19 C -0.15 -1.31 10.04 -39.55 -0.40 -1.71 16 20 C -0.09 -0.84 10.04 -39.61 -0.40 -1.23 16 21 C -0.17 -1.75 8.82 -39.38 -0.35 -2.10 16 22 C 0.07 0.73 5.26 -3.83 -0.02 0.71 16 23 C -0.15 -1.87 5.35 -26.65 -0.14 -2.02 16 24 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.01 0.31 7.51 -51.93 -0.39 -0.08 16 28 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 29 H 0.34 5.79 8.45 -39.29 -0.33 5.46 16 30 H 0.07 1.04 7.80 -51.93 -0.41 0.64 16 31 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.04 0.47 7.74 -51.93 -0.40 0.07 16 34 H 0.08 0.80 6.98 -51.93 -0.36 0.43 16 35 H 0.12 1.15 7.15 -52.49 -0.38 0.78 16 36 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 37 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 39 H 0.13 1.13 5.81 -52.49 -0.30 0.83 16 40 H 0.08 0.81 6.70 -51.93 -0.35 0.46 16 41 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.96 7.54 -51.93 -0.39 0.57 16 43 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -30.37 339.83 -11.16 -41.53 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -7.07 Total: 2.15 kcal Atomic # 6 Polarization: -16.75 SS G_CDS: -3.45 Total: -20.20 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: -0.73 Total: -45.31 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.37 -11.16 -41.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273239520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.145 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds