Wall clock time and date at job start Mon Mar 30 2020 03:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48502 * 109.47518 * 240.00145 * 3 2 1 5 5 H 1.48505 * 109.47048 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47117 * 120.00134 * 3 2 1 7 7 C 1.37878 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99525 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99938 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46806 * 180.02562 * 9 7 2 11 11 N 1.46900 * 109.46975 * 179.97438 * 10 9 7 12 12 C 1.46903 * 110.99821 * 180.02562 * 11 10 9 13 13 C 1.53126 * 109.52017 * 204.99839 * 12 11 10 14 14 C 1.53032 * 109.27823 * 182.37465 * 13 12 11 15 15 N 1.46855 * 109.52274 * 59.17835 * 14 13 12 16 16 C 1.39676 * 110.99902 * 174.15844 * 15 14 13 17 17 C 1.38906 * 120.07135 * 179.97438 * 16 15 14 18 18 C 1.38111 * 119.92343 * 180.02562 * 17 16 15 19 19 C 1.38288 * 120.07382 * 0.28047 * 18 17 16 20 20 C 1.38286 * 120.14755 * 359.44532 * 19 18 17 21 21 C 1.38112 * 120.07587 * 0.55318 * 20 19 18 22 22 C 1.46847 * 111.19708 * 298.25795 * 15 14 13 23 23 C 1.53038 * 109.52090 * 61.74195 * 22 15 14 24 24 H 0.97002 * 119.99934 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.47333 * 60.00249 * 9 7 2 26 26 H 1.08999 * 109.47009 * 299.99423 * 9 7 2 27 27 H 1.09000 * 109.47540 * 59.99443 * 10 9 7 28 28 H 1.08994 * 109.47169 * 299.99741 * 10 9 7 29 29 H 1.00900 * 110.99812 * 303.94821 * 11 10 9 30 30 H 1.09000 * 109.52125 * 325.12133 * 12 11 10 31 31 H 1.09003 * 109.50469 * 62.43469 * 13 12 11 32 32 H 1.09002 * 109.53631 * 302.33491 * 13 12 11 33 33 H 1.09002 * 109.46522 * 299.16950 * 14 13 12 34 34 H 1.09003 * 109.45639 * 179.19032 * 14 13 12 35 35 H 1.07999 * 120.03932 * 0.04675 * 17 16 15 36 36 H 1.08002 * 119.96028 * 179.97438 * 18 17 16 37 37 H 1.08001 * 119.92357 * 179.69823 * 19 18 17 38 38 H 1.08002 * 119.96005 * 180.25011 * 20 19 18 39 39 H 1.07998 * 120.03717 * 179.70130 * 21 20 19 40 40 H 1.08996 * 109.46146 * 181.75541 * 22 15 14 41 41 H 1.08997 * 109.46277 * 301.72638 * 22 15 14 42 42 H 1.09006 * 109.49692 * 180.87572 * 23 22 15 43 43 H 1.08998 * 109.50600 * 60.76251 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0015 11 7 1.5108 -4.9342 -0.0020 12 6 2.4353 -6.0759 -0.0011 13 6 1.7413 -7.2967 -0.6115 14 6 2.6882 -8.4975 -0.5539 15 7 3.0542 -8.7673 0.8425 16 6 3.8119 -9.9363 0.9445 17 6 4.2604 -10.3689 2.1859 18 6 5.0099 -11.5249 2.2831 19 6 5.3186 -12.2484 1.1457 20 6 4.8688 -11.8235 -0.0910 21 6 4.1190 -10.6684 -0.1954 22 6 3.7640 -7.6267 1.4353 23 6 2.8492 -6.3999 1.4370 24 1 -0.4850 0.8401 -0.0004 25 1 0.6247 -2.5563 -0.8920 26 1 0.6241 -2.5575 0.8881 27 1 2.8714 -3.6047 0.8890 28 1 2.8726 -3.6039 -0.8909 29 1 0.8741 -4.9845 0.7792 30 1 3.3200 -5.8285 -0.5879 31 1 1.4823 -7.0871 -1.6494 32 1 0.8353 -7.5204 -0.0484 33 1 3.5878 -8.2787 -1.1292 34 1 2.1918 -9.3720 -0.9747 35 1 4.0232 -9.8022 3.0741 36 1 5.3593 -11.8616 3.2480 37 1 5.9089 -13.1494 1.2240 38 1 5.1084 -12.3930 -0.9768 39 1 3.7721 -10.3346 -1.1621 40 1 4.0490 -7.8686 2.4592 41 1 4.6585 -7.4119 0.8506 42 1 3.3818 -5.5494 1.8628 43 1 1.9609 -6.6091 2.0329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273239520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:04:36 Heat of formation + Delta-G solvation = 3.452492 kcal Electronic energy + Delta-G solvation = -20471.005906 eV Core-core repulsion = 17514.400511 eV Total energy + Delta-G solvation = -2956.605395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.35411 -39.22184 -37.17215 -35.27242 -33.41550 -32.57370 -31.31031 -30.86539 -29.03187 -26.29761 -24.94774 -24.22212 -22.64067 -22.44833 -22.15545 -20.72785 -18.68444 -18.48164 -16.89926 -16.62737 -16.40598 -16.36644 -15.93265 -15.59147 -15.21420 -14.94351 -14.81118 -14.48604 -14.34606 -14.22276 -13.85932 -13.50443 -13.26171 -13.01450 -12.83088 -12.62072 -12.39959 -12.30106 -12.19411 -12.14675 -11.94909 -11.68750 -11.53023 -11.37756 -11.09636 -10.62850 -10.56492 -9.83184 -9.23055 -8.76441 -8.20656 -6.32404 0.48204 0.51215 1.39817 1.43089 1.51078 2.40027 2.64613 2.98509 3.12563 3.27301 3.74210 3.81836 3.94710 4.09820 4.14891 4.15899 4.29267 4.33073 4.46445 4.48096 4.52952 4.58831 4.61346 4.63883 4.71265 4.77020 4.80733 4.89935 5.03775 5.08348 5.13912 5.20985 5.28487 5.39398 5.44968 5.54341 5.67687 5.68359 5.78926 5.89168 6.06058 6.14806 6.28966 6.38117 6.54493 6.84881 7.36846 8.91271 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.046517 B = 0.002712 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.784698 B =10321.563690 C =10539.229817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.032 3.968 10 C 0.086 3.914 11 N -0.691 5.691 12 C 0.086 3.914 13 C -0.098 4.098 14 C 0.059 3.941 15 N -0.496 5.496 16 C 0.097 3.903 17 C -0.157 4.157 18 C -0.101 4.101 19 C -0.156 4.156 20 C -0.100 4.100 21 C -0.186 4.186 22 C 0.071 3.929 23 C -0.141 4.141 24 H 0.264 0.736 25 H -0.007 1.007 26 H -0.009 1.009 27 H 0.020 0.980 28 H 0.055 0.945 29 H 0.339 0.661 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.133 0.867 40 H 0.089 0.911 41 H 0.041 0.959 42 H 0.065 0.935 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.891 -24.819 2.324 27.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.791 3.209 4 H -0.191 1.191 5 H -0.208 1.208 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C -0.006 4.006 10 C -0.042 4.042 11 N -0.320 5.320 12 C -0.024 4.024 13 C -0.136 4.136 14 C -0.069 4.069 15 N -0.212 5.212 16 C 0.000 4.000 17 C -0.178 4.178 18 C -0.119 4.119 19 C -0.175 4.175 20 C -0.119 4.119 21 C -0.206 4.206 22 C -0.055 4.055 23 C -0.180 4.180 24 H 0.073 0.927 25 H 0.012 0.988 26 H 0.009 0.991 27 H 0.038 0.962 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.112 0.888 35 H 0.144 0.856 36 H 0.160 0.840 37 H 0.159 0.841 38 H 0.158 0.842 39 H 0.151 0.849 40 H 0.107 0.893 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.175 -24.669 1.886 26.752 hybrid contribution 0.828 1.290 0.538 1.625 sum 11.003 -23.379 2.424 25.952 Atomic orbital electron populations 1.70104 1.07831 1.27882 1.51327 1.25990 0.95783 1.03411 0.94622 0.85475 0.78246 0.77956 0.79205 1.19150 1.20792 1.19104 1.21585 0.93510 0.92281 1.51041 0.92170 1.18916 0.94318 0.92342 0.94983 1.21771 0.95530 0.88393 0.98547 1.60603 1.19800 1.01591 1.50051 1.21678 0.94739 0.90829 0.95181 1.21519 0.98345 0.92066 1.01691 1.22266 0.98758 0.98871 0.86956 1.59023 1.40466 1.02410 1.19257 1.19198 0.93353 0.92990 0.94493 1.20992 1.01743 0.98893 0.96130 1.21313 0.96848 0.94022 0.99743 1.21399 1.02180 1.01385 0.92516 1.21321 0.96269 0.95577 0.98708 1.21543 1.02611 0.98618 0.97863 1.22088 0.94372 0.88660 1.00337 1.22285 1.00498 0.97102 0.98141 0.92723 0.98844 0.99093 0.96199 0.92673 0.84315 0.91527 0.90516 0.91514 0.93338 0.88835 0.85631 0.84043 0.84136 0.84174 0.84888 0.89285 0.94055 0.91623 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 8 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 9 C 0.03 1.72 5.23 29.85 0.16 1.88 16 10 C 0.09 3.65 5.42 86.30 0.47 4.12 16 11 N -0.69 -24.46 6.26 -491.15 -3.07 -27.54 16 12 C 0.09 2.39 2.53 44.99 0.11 2.50 16 13 C -0.10 -2.34 5.70 30.65 0.17 -2.16 16 14 C 0.06 1.19 4.15 86.32 0.36 1.55 16 15 N -0.50 -10.76 4.70 -695.39 -3.27 -14.03 16 16 C 0.10 2.02 5.64 38.21 0.22 2.23 16 17 C -0.16 -2.97 9.16 22.40 0.21 -2.77 16 18 C -0.10 -1.57 10.04 22.25 0.22 -1.35 16 19 C -0.16 -2.26 10.04 22.29 0.22 -2.04 16 20 C -0.10 -1.55 10.04 22.25 0.22 -1.33 16 21 C -0.19 -3.42 8.82 22.40 0.20 -3.22 16 22 C 0.07 1.53 5.26 86.33 0.45 1.99 16 23 C -0.14 -3.48 5.35 30.64 0.16 -3.31 16 24 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 27 H 0.02 0.82 7.51 -2.39 -0.02 0.80 16 28 H 0.05 2.34 8.06 -2.39 -0.02 2.32 16 29 H 0.34 11.85 8.45 -89.69 -0.76 11.10 16 30 H 0.07 1.92 7.80 -2.39 -0.02 1.90 16 31 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.05 0.95 7.74 -2.39 -0.02 0.94 16 34 H 0.09 1.69 6.98 -2.39 -0.02 1.67 16 35 H 0.13 2.21 7.15 -2.91 -0.02 2.19 16 36 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 37 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.48 16 39 H 0.13 2.16 5.81 -2.91 -0.02 2.15 16 40 H 0.09 1.73 6.70 -2.39 -0.02 1.71 16 41 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 1.71 7.54 -2.38 -0.02 1.69 16 43 H 0.07 1.81 8.10 -2.39 -0.02 1.79 16 Total: -1.00 -65.24 339.83 0.06 -65.17 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.22 Total: 19.68 kcal Atomic # 6 Polarization: -36.55 SS G_CDS: 3.87 Total: -32.68 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -6.06 Total: -98.69 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -65.24 0.06 -65.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273239520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.624 kcal (2) G-P(sol) polarization free energy of solvation -65.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds