Wall clock time and date at job start Mon Mar 30 2020 01:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47284 * 2 1 4 4 N 1.31895 * 119.90936 * 271.48112 * 3 2 1 5 5 N 1.28277 * 122.67452 * 180.02562 * 4 3 2 6 6 C 1.32585 * 122.19830 * 0.02562 * 5 4 3 7 7 N 1.38454 * 120.27736 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00429 * 0.27881 * 7 6 5 9 9 C 1.53000 * 109.47326 * 179.71973 * 8 7 6 10 10 C 1.50702 * 109.47104 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99494 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00356 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99321 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00517 * 179.97438 * 12 10 9 15 15 H 1.48510 * 109.46881 * 60.00029 * 14 12 10 16 16 H 1.48494 * 109.47356 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47058 * 300.00221 * 14 12 10 18 18 C 1.40768 * 119.44025 * 0.27354 * 6 5 4 19 19 C 1.43200 * 121.19586 * 179.72381 * 18 6 5 20 20 N 5.99392 * 107.13648 * 35.15291 * 2 1 3 21 21 C 1.38461 * 119.90523 * 91.50452 * 3 2 1 22 22 C 1.50694 * 121.05384 * 359.97438 * 21 3 2 23 23 C 1.53003 * 109.47272 * 90.67257 * 22 21 3 24 24 H 1.09002 * 109.46712 * 64.88726 * 1 2 3 25 25 H 1.08995 * 109.47343 * 184.88440 * 1 2 3 26 26 H 1.08994 * 109.46886 * 304.88825 * 1 2 3 27 27 H 1.09004 * 109.47121 * 239.99746 * 2 1 3 28 28 H 1.08998 * 109.47240 * 120.00232 * 2 1 3 29 29 H 0.97000 * 119.99888 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47003 * 299.72499 * 8 7 6 31 31 H 1.09004 * 109.46774 * 59.72007 * 8 7 6 32 32 H 1.08994 * 109.47239 * 299.99869 * 9 8 7 33 33 H 1.09004 * 109.46759 * 59.99922 * 9 8 7 34 34 H 0.97003 * 119.99627 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.46958 * 210.67014 * 22 21 3 36 36 H 1.08996 * 109.47212 * 330.66909 * 22 21 3 37 37 H 1.08999 * 109.46929 * 175.73256 * 23 22 21 38 38 H 1.08997 * 109.47168 * 295.72928 * 23 22 21 39 39 H 1.08998 * 109.46976 * 55.72838 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2237 2.0506 -1.1429 5 7 2.6498 3.2590 -1.2048 6 6 2.9305 3.9656 -0.1186 7 7 3.3887 5.2672 -0.2317 8 6 3.5595 5.8714 -1.5554 9 6 4.0664 7.3065 -1.3995 10 6 4.2426 7.9277 -2.7612 11 1 4.0160 7.3559 -3.6489 12 6 4.6940 9.2256 -2.8737 13 7 4.9713 9.9213 -1.7925 14 14 4.9131 9.9954 -4.5615 15 1 3.6100 10.0058 -5.2737 16 1 5.4050 11.3883 -4.4102 17 1 5.8977 9.2042 -5.3423 18 6 2.7648 3.3792 1.1503 19 6 3.0623 4.1059 2.3478 20 7 3.2961 4.6832 3.2979 21 6 2.2922 2.0611 1.1998 22 6 2.0804 1.3601 2.5169 23 6 3.3731 0.6555 2.9333 24 1 -0.3633 0.4362 -0.9306 25 1 -0.3634 -1.0239 0.0875 26 1 -0.3633 0.5878 0.8429 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.5926 5.7806 0.5656 30 1 4.2820 5.2911 -2.1292 31 1 2.6026 5.8788 -2.0775 32 1 3.3439 7.8868 -0.8258 33 1 5.0232 7.2991 -0.8773 34 1 5.2886 10.8346 -1.8716 35 1 1.8038 2.0907 3.2770 36 1 1.2829 0.6244 2.4128 37 1 3.2435 0.2124 3.9207 38 1 3.6090 -0.1270 2.2121 39 1 4.1877 1.3791 2.9638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273298125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:34 Heat of formation + Delta-G solvation = 60.769526 kcal Electronic energy + Delta-G solvation = -20246.274086 eV Core-core repulsion = 17188.613800 eV Total energy + Delta-G solvation = -3057.660286 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -41.29631 -37.22362 -36.93387 -35.39457 -33.89959 -33.00758 -31.46258 -30.30799 -28.69205 -26.01144 -25.27359 -24.12745 -22.84351 -21.50660 -21.11318 -18.70184 -17.96866 -17.38607 -16.16960 -15.65580 -15.20124 -14.77810 -14.51544 -14.41352 -13.97569 -13.89043 -13.82645 -13.59396 -13.26792 -13.02678 -12.83833 -12.67982 -12.33595 -12.10059 -11.88832 -11.53210 -11.32347 -11.29618 -11.25988 -10.83032 -10.81620 -10.66007 -10.02648 -9.76721 -9.67638 -9.60782 -9.35616 -8.47380 -7.82138 -6.12184 -4.16029 0.30333 1.14029 2.42990 2.85031 3.18575 3.29939 3.34149 3.37840 3.58600 3.67583 4.00097 4.27908 4.38102 4.50241 4.57889 4.86779 4.89290 4.91108 5.14721 5.16888 5.24071 5.24872 5.42005 5.44220 5.52996 5.64692 5.74710 5.83413 5.92550 5.98640 6.09325 6.20306 6.24126 6.64657 7.06790 7.28842 7.49696 7.53236 7.56916 7.85656 8.22596 8.88508 8.90651 9.49185 10.99435 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.003715 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.771193 B = 7536.070032 C = 8401.842199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.060 4.060 3 C -0.005 4.005 4 N -0.167 5.167 5 N -0.292 5.292 6 C 0.385 3.615 7 N -0.687 5.687 8 C 0.124 3.876 9 C 0.010 3.990 10 C -0.523 4.523 11 H 0.061 0.939 12 C 0.059 3.941 13 N -0.894 5.894 14 Si 0.899 3.101 15 H -0.275 1.275 16 H -0.287 1.287 17 H -0.275 1.275 18 C -0.110 4.110 19 C 0.259 3.741 20 N -0.401 5.401 21 C 0.020 3.980 22 C -0.094 4.094 23 C -0.147 4.147 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.408 0.592 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.022 0.978 33 H 0.022 0.978 34 H 0.263 0.737 35 H 0.079 0.921 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.058 -20.935 8.013 23.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.099 4.099 3 C -0.153 4.153 4 N -0.011 5.011 5 N -0.146 5.146 6 C 0.139 3.861 7 N -0.314 5.314 8 C 0.002 3.998 9 C -0.027 4.027 10 C -0.561 4.561 11 H 0.080 0.920 12 C -0.143 4.143 13 N -0.532 5.532 14 Si 0.726 3.274 15 H -0.200 1.200 16 H -0.213 1.213 17 H -0.200 1.200 18 C -0.130 4.130 19 C -0.056 4.056 20 N -0.078 5.078 21 C 0.006 3.994 22 C -0.132 4.132 23 C -0.205 4.205 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.073 0.927 27 H 0.104 0.896 28 H 0.099 0.901 29 H 0.245 0.755 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.620 -19.700 7.668 22.152 hybrid contribution 0.261 0.797 0.631 1.049 sum -6.358 -18.903 8.299 21.602 Atomic orbital electron populations 1.21767 0.94366 1.01905 1.02613 1.20304 0.96313 0.89571 1.03738 1.22208 1.04887 0.99341 0.88881 1.72584 1.02986 1.00958 1.24613 1.73327 1.17389 1.01051 1.22874 1.20153 0.88781 0.88169 0.89030 1.45246 1.65573 1.08655 1.11929 1.21959 1.01183 0.96394 0.80226 1.19349 0.96734 0.88113 0.98506 1.20961 1.45202 0.98044 0.91915 0.92037 1.25008 0.95101 0.97158 0.97010 1.69955 1.44830 1.10378 1.28076 0.86541 0.78707 0.78170 0.83951 1.20028 1.21260 1.20022 1.16353 1.14112 0.94888 0.87682 1.25051 0.94024 0.93765 0.92780 1.81294 1.08727 1.07687 1.10078 1.20829 0.90454 0.90818 0.97326 1.20734 1.00053 1.00136 0.92286 1.21743 0.96203 1.00706 1.01820 0.91950 0.91967 0.92727 0.89631 0.90111 0.75529 0.91653 0.91668 0.95948 0.95944 0.92717 0.90293 0.88773 0.91437 0.91683 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.77 37.16 0.36 -0.66 16 2 C -0.06 -0.46 5.58 -27.89 -0.16 -0.62 16 3 C 0.00 -0.05 6.11 -82.49 -0.50 -0.56 16 4 N -0.17 -2.48 11.39 33.56 0.38 -2.09 16 5 N -0.29 -4.95 10.74 31.40 0.34 -4.61 16 6 C 0.39 6.21 7.58 -154.77 -1.17 5.04 16 7 N -0.69 -12.07 5.63 -60.07 -0.34 -12.40 16 8 C 0.12 2.52 5.65 -4.04 -0.02 2.50 16 9 C 0.01 0.26 5.09 -27.88 -0.14 0.12 16 10 C -0.52 -14.31 9.11 -34.44 -0.31 -14.62 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 14 Si 0.90 21.28 29.54 -169.99 -5.02 16.25 16 15 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C -0.11 -1.50 5.79 -106.31 -0.62 -2.11 16 19 C 0.26 3.64 12.96 -22.47 -0.29 3.35 16 20 N -0.40 -6.17 18.54 41.84 0.78 -5.40 16 21 C 0.02 0.22 5.21 -103.84 -0.54 -0.33 16 22 C -0.09 -0.73 5.04 -27.88 -0.14 -0.87 16 23 C -0.15 -1.03 9.81 37.16 0.36 -0.66 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.05 0.37 7.73 -51.93 -0.40 -0.04 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.45 5.96 -51.93 -0.31 0.14 16 29 H 0.41 6.95 7.40 -40.82 -0.30 6.65 16 30 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.08 0.65 7.28 -51.93 -0.38 0.27 16 36 H 0.09 0.53 6.22 -51.93 -0.32 0.20 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.40 7.48 -51.93 -0.39 0.01 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -30.28 335.01 -6.80 -37.08 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -5.45 Total: -0.48 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -3.27 Total: -7.87 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 1.89 Total: -50.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.28 -6.80 -37.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273298125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.851 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds