Wall clock time and date at job start Mon Mar 30 2020 01:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50694 * 109.47284 * 2 1 4 4 N 1.31895 * 119.90936 * 271.48112 * 3 2 1 5 5 N 1.28277 * 122.67452 * 180.02562 * 4 3 2 6 6 C 1.32585 * 122.19830 * 0.02562 * 5 4 3 7 7 N 1.38454 * 120.27736 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00429 * 0.27881 * 7 6 5 9 9 C 1.53000 * 109.47326 * 179.71973 * 8 7 6 10 10 C 1.50702 * 109.47104 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99494 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00356 * 180.02562 * 10 9 8 13 13 N 1.31520 * 119.99321 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00517 * 179.97438 * 12 10 9 15 15 H 1.48510 * 109.46881 * 60.00029 * 14 12 10 16 16 H 1.48494 * 109.47356 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47058 * 300.00221 * 14 12 10 18 18 C 1.40768 * 119.44025 * 0.27354 * 6 5 4 19 19 C 1.43200 * 121.19586 * 179.72381 * 18 6 5 20 20 N 5.99392 * 107.13648 * 35.15291 * 2 1 3 21 21 C 1.38461 * 119.90523 * 91.50452 * 3 2 1 22 22 C 1.50694 * 121.05384 * 359.97438 * 21 3 2 23 23 C 1.53003 * 109.47272 * 90.67257 * 22 21 3 24 24 H 1.09002 * 109.46712 * 64.88726 * 1 2 3 25 25 H 1.08995 * 109.47343 * 184.88440 * 1 2 3 26 26 H 1.08994 * 109.46886 * 304.88825 * 1 2 3 27 27 H 1.09004 * 109.47121 * 239.99746 * 2 1 3 28 28 H 1.08998 * 109.47240 * 120.00232 * 2 1 3 29 29 H 0.97000 * 119.99888 * 179.97438 * 7 6 5 30 30 H 1.08999 * 109.47003 * 299.72499 * 8 7 6 31 31 H 1.09004 * 109.46774 * 59.72007 * 8 7 6 32 32 H 1.08994 * 109.47239 * 299.99869 * 9 8 7 33 33 H 1.09004 * 109.46759 * 59.99922 * 9 8 7 34 34 H 0.97003 * 119.99627 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.46958 * 210.67014 * 22 21 3 36 36 H 1.08996 * 109.47212 * 330.66909 * 22 21 3 37 37 H 1.08999 * 109.46929 * 175.73256 * 23 22 21 38 38 H 1.08997 * 109.47168 * 295.72928 * 23 22 21 39 39 H 1.08998 * 109.46976 * 55.72838 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 2.2237 2.0506 -1.1429 5 7 2.6498 3.2590 -1.2048 6 6 2.9305 3.9656 -0.1186 7 7 3.3887 5.2672 -0.2317 8 6 3.5595 5.8714 -1.5554 9 6 4.0664 7.3065 -1.3995 10 6 4.2426 7.9277 -2.7612 11 1 4.0160 7.3559 -3.6489 12 6 4.6940 9.2256 -2.8737 13 7 4.9713 9.9213 -1.7925 14 14 4.9131 9.9954 -4.5615 15 1 3.6100 10.0058 -5.2737 16 1 5.4050 11.3883 -4.4102 17 1 5.8977 9.2042 -5.3423 18 6 2.7648 3.3792 1.1503 19 6 3.0623 4.1059 2.3478 20 7 3.2961 4.6832 3.2979 21 6 2.2922 2.0611 1.1998 22 6 2.0804 1.3601 2.5169 23 6 3.3731 0.6555 2.9333 24 1 -0.3633 0.4362 -0.9306 25 1 -0.3634 -1.0239 0.0875 26 1 -0.3633 0.5878 0.8429 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 3.5926 5.7806 0.5656 30 1 4.2820 5.2911 -2.1292 31 1 2.6026 5.8788 -2.0775 32 1 3.3439 7.8868 -0.8258 33 1 5.0232 7.2991 -0.8773 34 1 5.2886 10.8346 -1.8716 35 1 1.8038 2.0907 3.2770 36 1 1.2829 0.6244 2.4128 37 1 3.2435 0.2124 3.9207 38 1 3.6090 -0.1270 2.2121 39 1 4.1877 1.3791 2.9638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273298125.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:33 Heat of formation + Delta-G solvation = 42.951862 kcal Electronic energy + Delta-G solvation = -20247.046718 eV Core-core repulsion = 17188.613800 eV Total energy + Delta-G solvation = -3058.432917 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.39069 -38.45950 -38.07252 -36.52331 -35.38623 -34.37119 -32.64405 -31.50417 -30.07357 -27.11724 -26.72039 -25.33889 -23.58271 -23.09866 -22.29921 -19.83367 -19.12770 -18.79253 -18.03089 -16.80686 -16.53915 -16.05606 -15.78367 -15.48242 -15.33523 -14.99502 -14.77703 -14.51265 -14.30079 -14.27753 -14.08845 -13.69097 -13.47952 -13.29114 -13.04145 -12.83224 -12.57413 -12.51479 -12.45841 -12.15365 -11.84529 -11.71339 -11.59430 -11.55092 -11.42357 -10.78857 -10.66707 -10.60205 -9.13862 -8.26343 -6.37809 -0.76830 0.06437 1.27993 1.41165 1.44228 1.52004 1.71384 1.89222 2.40641 2.46556 2.57064 2.99719 3.08838 3.38438 3.53645 3.65445 4.04512 4.13957 4.29159 4.38229 4.42398 4.48316 4.50865 4.56127 4.66345 4.80004 4.83108 4.99822 5.08213 5.13587 5.18787 5.32543 5.34004 5.35459 5.51161 5.55063 5.65068 5.85024 6.08043 6.13933 6.26905 6.76648 7.32180 7.77517 8.85857 Molecular weight = 274.15amu Principal moments of inertia in cm(-1) A = 0.025877 B = 0.003715 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.771193 B = 7536.070032 C = 8401.842199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C 0.013 3.987 4 N -0.195 5.195 5 N -0.327 5.327 6 C 0.373 3.627 7 N -0.699 5.699 8 C 0.151 3.849 9 C 0.019 3.981 10 C -0.543 4.543 11 H 0.067 0.933 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.969 3.031 15 H -0.265 1.265 16 H -0.284 1.284 17 H -0.265 1.265 18 C -0.114 4.114 19 C 0.275 3.725 20 N -0.425 5.425 21 C 0.037 3.963 22 C -0.093 4.093 23 C -0.147 4.147 24 H 0.042 0.958 25 H 0.087 0.913 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.114 0.886 29 H 0.408 0.592 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.001 0.999 33 H 0.001 0.999 34 H 0.265 0.735 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.983 -23.659 8.321 26.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.100 4.100 3 C -0.137 4.137 4 N -0.037 5.037 5 N -0.180 5.180 6 C 0.128 3.872 7 N -0.328 5.328 8 C 0.028 3.972 9 C -0.019 4.019 10 C -0.582 4.582 11 H 0.085 0.915 12 C -0.195 4.195 13 N -0.571 5.571 14 Si 0.793 3.207 15 H -0.190 1.190 16 H -0.209 1.209 17 H -0.190 1.190 18 C -0.133 4.133 19 C -0.040 4.040 20 N -0.102 5.102 21 C 0.022 3.978 22 C -0.131 4.131 23 C -0.205 4.205 24 H 0.062 0.938 25 H 0.106 0.894 26 H 0.077 0.923 27 H 0.107 0.893 28 H 0.132 0.868 29 H 0.244 0.756 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.106 0.894 38 H 0.097 0.903 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.563 -22.474 7.958 25.012 hybrid contribution 0.481 1.442 0.642 1.650 sum -7.082 -21.032 8.601 23.801 Atomic orbital electron populations 1.21773 0.93413 1.03502 1.01859 1.20548 0.96948 0.86877 1.05598 1.22945 1.02118 1.00707 0.87950 1.72533 1.04269 1.00461 1.26427 1.73248 1.18760 1.02249 1.23705 1.20178 0.89508 0.87510 0.90051 1.44865 1.67798 1.09672 1.10498 1.21361 1.00345 0.93762 0.81717 1.19162 0.95140 0.90537 0.97043 1.21425 1.44974 0.98631 0.93133 0.91465 1.25953 0.94658 0.97757 1.01107 1.70086 1.45818 1.10763 1.30461 0.85435 0.79093 0.77173 0.78998 1.19027 1.20908 1.19015 1.16432 1.14492 0.95931 0.86425 1.25030 0.93304 0.93183 0.92458 1.81304 1.09559 1.08264 1.11028 1.21309 0.87865 0.89531 0.99051 1.20930 1.01634 1.00637 0.89905 1.21780 0.94732 1.00454 1.03484 0.93833 0.89411 0.92265 0.89277 0.86815 0.75574 0.92173 0.92196 0.98058 0.98056 0.92608 0.90494 0.85445 0.89360 0.90300 0.94492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.77 71.98 0.70 -0.80 16 2 C -0.06 -0.70 5.58 29.85 0.17 -0.54 16 3 C 0.01 0.27 6.11 42.60 0.26 0.53 16 4 N -0.20 -5.68 11.39 -47.74 -0.54 -6.22 16 5 N -0.33 -11.27 10.74 -54.58 -0.59 -11.86 16 6 C 0.37 12.28 7.58 133.60 1.01 13.29 16 7 N -0.70 -25.67 5.63 -343.95 -1.94 -27.61 16 8 C 0.15 6.42 5.65 86.38 0.49 6.91 16 9 C 0.02 0.97 5.09 29.85 0.15 1.12 16 10 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 11 H 0.07 3.60 7.74 -2.91 -0.02 3.58 16 12 C 0.00 0.21 5.46 84.65 0.46 0.67 16 13 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 14 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 15 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 17 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 18 C -0.11 -3.03 5.79 -20.96 -0.12 -3.15 16 19 C 0.28 7.68 12.96 88.33 1.15 8.82 16 20 N -0.42 -13.05 18.54 19.00 0.35 -12.70 16 21 C 0.04 0.72 5.21 -19.36 -0.10 0.62 16 22 C -0.09 -1.11 5.04 29.85 0.15 -0.96 16 23 C -0.15 -1.53 9.81 71.98 0.71 -0.82 16 24 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.06 0.56 7.73 -2.39 -0.02 0.54 16 27 H 0.09 1.05 8.14 -2.38 -0.02 1.04 16 28 H 0.11 0.62 5.96 -2.39 -0.01 0.61 16 29 H 0.41 14.70 7.40 -92.71 -0.69 14.01 16 30 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.06 2.57 8.14 -2.38 -0.02 2.55 16 32 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 35 H 0.08 1.03 7.28 -2.39 -0.02 1.01 16 36 H 0.13 0.73 6.22 -2.39 -0.01 0.72 16 37 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 0.61 7.48 -2.39 -0.02 0.59 16 39 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 Total: -1.00 -67.86 335.01 5.24 -62.62 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.38 Total: 10.19 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: 5.26 Total: -4.54 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -2.43 Total: -114.23 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -67.86 5.24 -62.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273298125.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.576 kcal (2) G-P(sol) polarization free energy of solvation -67.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds