Wall clock time and date at job start Mon Mar 30 2020 03:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00293 * 2 1 4 4 H 1.48505 * 109.46972 * 240.00193 * 3 2 1 5 5 H 1.48494 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47040 * 120.00572 * 3 2 1 7 7 C 1.37881 * 119.99311 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99553 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00552 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47082 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47270 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00204 * 185.30138 * 12 11 10 14 14 H 1.09007 * 109.46990 * 32.21245 * 13 12 11 15 15 C 1.50690 * 109.47290 * 152.21680 * 13 12 11 16 16 C 1.38678 * 120.41771 * 219.99523 * 15 13 12 17 17 C 1.38626 * 118.42261 * 180.02562 * 16 15 13 18 18 C 1.38233 * 119.16041 * 0.02562 * 17 16 15 19 19 N 1.31859 * 120.76141 * 359.97438 * 18 17 16 20 20 C 1.31885 * 121.72739 * 359.70477 * 19 18 17 21 21 C 1.53000 * 109.46796 * 272.21753 * 13 12 11 22 22 C 1.53788 * 113.61619 * 83.55395 * 21 13 12 23 23 C 1.54050 * 86.98488 * 140.01889 * 22 21 13 24 24 C 1.53784 * 113.61212 * 181.15977 * 21 13 12 25 25 H 0.97000 * 119.99300 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46648 * 59.99876 * 9 7 2 27 27 H 1.08994 * 109.47128 * 300.00067 * 9 7 2 28 28 H 1.09006 * 109.47150 * 60.00533 * 10 9 7 29 29 H 1.08994 * 109.47435 * 300.00228 * 10 9 7 30 30 H 1.09000 * 109.46743 * 59.99901 * 11 10 9 31 31 H 1.09004 * 109.47093 * 300.00306 * 11 10 9 32 32 H 1.00890 * 111.00283 * 61.34306 * 12 11 10 33 33 H 1.08000 * 120.78952 * 359.97438 * 16 15 13 34 34 H 1.07994 * 120.42232 * 180.02562 * 17 16 15 35 35 H 1.07997 * 119.61753 * 179.97438 * 18 17 16 36 36 H 1.07998 * 119.61822 * 180.30637 * 20 19 18 37 37 H 1.08999 * 112.85215 * 312.35590 * 21 13 12 38 38 H 1.09004 * 113.61193 * 254.61379 * 22 21 13 39 39 H 1.09004 * 113.61360 * 25.51046 * 22 21 13 40 40 H 1.09000 * 113.61762 * 220.02142 * 23 22 21 41 41 H 1.08996 * 113.69170 * 89.12953 * 23 22 21 42 42 H 1.08997 * 113.61600 * 334.47640 * 24 21 13 43 43 H 1.08996 * 113.61723 * 105.39057 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4800 -4.9872 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 1.7386 -7.3913 -0.1279 14 1 0.8411 -7.2615 -0.7329 15 6 2.6501 -8.3923 -0.7896 16 6 2.1512 -9.2833 -1.7279 17 6 3.0263 -10.1869 -2.3104 18 6 4.3577 -10.1702 -1.9389 19 7 4.7971 -9.3084 -1.0429 20 6 3.9946 -8.4307 -0.4729 21 6 1.3478 -7.8980 1.2618 22 6 0.0311 -7.3018 1.7872 23 6 -0.2888 -8.7039 2.3394 24 6 0.6347 -9.2604 1.2427 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5572 0.8896 28 1 2.8724 -3.6049 0.8878 29 1 2.8711 -3.6041 -0.8922 30 1 0.8524 -5.0447 -0.8905 31 1 0.8543 -5.0450 0.8895 32 1 3.0134 -6.0851 0.8243 33 1 1.1055 -9.2741 -1.9978 34 1 2.6725 -10.8949 -3.0452 35 1 5.0459 -10.8712 -2.3878 36 1 4.3918 -7.7371 0.2533 37 1 2.1678 -7.8444 1.9780 38 1 0.1716 -6.5476 2.5616 39 1 -0.6473 -6.9781 0.9978 40 1 -1.3328 -8.9929 2.2191 41 1 0.0831 -8.8719 3.3501 42 1 0.1209 -9.4712 0.3049 43 1 1.2620 -10.0863 1.5779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280800514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:41 Heat of formation + Delta-G solvation = 34.732136 kcal Electronic energy + Delta-G solvation = -20677.627456 eV Core-core repulsion = 17722.378448 eV Total energy + Delta-G solvation = -2955.249008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.56978 -39.01940 -36.03727 -33.83778 -32.64364 -31.87326 -30.39898 -27.57543 -25.74417 -25.53708 -23.91933 -23.67045 -22.33777 -21.08472 -20.19423 -19.40512 -17.22523 -16.45613 -16.18177 -15.98634 -15.70658 -15.30583 -14.50846 -14.26817 -14.03146 -13.93447 -13.63402 -13.14630 -13.05127 -12.57955 -12.41144 -12.26628 -11.95007 -11.66225 -11.61269 -11.32233 -11.00550 -10.78479 -10.63848 -10.57562 -10.53286 -10.34982 -9.85258 -9.67228 -9.47141 -9.33253 -9.07675 -8.92805 -8.32322 -8.12716 -5.97950 -3.99814 1.09147 1.23969 3.35276 3.39216 3.42249 3.75914 4.21221 4.29912 4.48602 4.49357 4.54257 4.60496 4.70501 4.77718 4.90490 5.00525 5.13540 5.23637 5.30882 5.37927 5.50691 5.56318 5.60098 5.62096 5.74107 5.77716 5.81307 5.87959 5.95344 6.03547 6.06890 6.23988 6.31509 6.34020 6.64594 6.73311 6.78078 7.15699 7.30314 7.56594 7.70225 7.85450 7.95815 8.02624 8.46164 9.07240 9.64086 11.13485 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.003576 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.917042 B = 7827.101147 C = 8808.783773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.023 3.977 10 C -0.106 4.106 11 C 0.060 3.940 12 N -0.682 5.682 13 C 0.138 3.862 14 H 0.087 0.913 15 C -0.105 4.105 16 C -0.074 4.074 17 C -0.174 4.174 18 C 0.086 3.914 19 N -0.487 5.487 20 C 0.119 3.881 21 C -0.134 4.134 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.130 4.130 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.013 0.987 28 H 0.045 0.955 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.339 0.661 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.091 0.909 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 -22.714 0.404 22.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.068 4.068 12 N -0.311 5.311 13 C 0.026 3.974 14 H 0.105 0.895 15 C -0.107 4.107 16 C -0.101 4.101 17 C -0.194 4.194 18 C -0.071 4.071 19 N -0.195 5.195 20 C -0.038 4.038 21 C -0.154 4.154 22 C -0.172 4.172 23 C -0.180 4.180 24 C -0.168 4.168 25 H 0.070 0.930 26 H 0.033 0.967 27 H 0.032 0.968 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.049 0.951 32 H 0.157 0.843 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.168 0.832 36 H 0.170 0.830 37 H 0.109 0.891 38 H 0.088 0.912 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.096 0.904 42 H 0.098 0.902 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.283 -22.526 -0.047 22.642 hybrid contribution -0.894 0.887 0.573 1.383 sum 1.389 -21.640 0.526 21.691 Atomic orbital electron populations 1.69959 1.06056 1.26639 1.51023 1.25026 0.94846 0.99236 0.95384 0.86660 0.79581 0.83133 0.78646 1.20218 1.21330 1.20260 1.21230 0.93037 0.91088 1.50379 0.92732 1.19050 0.93999 0.91386 0.97021 1.21612 0.99173 0.92907 1.00743 1.22188 0.93967 0.90576 1.00058 1.60627 1.23716 1.01041 1.45758 1.20455 0.94714 0.88129 0.94057 0.89531 1.20817 0.96000 0.96764 0.97167 1.21428 1.00068 0.94014 0.94590 1.22058 0.95080 1.00555 1.01736 1.22695 0.93933 0.96412 0.94079 1.67700 1.39106 1.04264 1.08448 1.22528 0.89557 0.94560 0.97197 1.23308 0.97676 0.97149 0.97233 1.23030 0.96653 0.96651 1.00874 1.22864 0.99738 0.96849 0.98557 1.22839 0.98312 0.96438 0.99191 0.93011 0.96693 0.96833 0.93640 0.92642 0.91692 0.95096 0.84309 0.85289 0.85157 0.83245 0.83008 0.89068 0.91162 0.89844 0.91570 0.90381 0.90212 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 10 C -0.11 -2.18 5.46 -26.73 -0.15 -2.33 16 11 C 0.06 0.99 5.42 -3.82 -0.02 0.97 16 12 N -0.68 -9.29 5.64 -107.95 -0.61 -9.90 16 13 C 0.14 1.56 2.11 -68.87 -0.15 1.42 16 14 H 0.09 1.02 7.34 -51.93 -0.38 0.64 16 15 C -0.10 -1.19 4.44 -104.48 -0.46 -1.65 16 16 C -0.07 -0.75 9.60 -39.28 -0.38 -1.12 16 17 C -0.17 -1.61 10.11 -39.44 -0.40 -2.01 16 18 C 0.09 0.90 11.18 -17.54 -0.20 0.70 16 19 N -0.49 -6.27 10.36 -13.25 -0.14 -6.40 16 20 C 0.12 1.47 10.50 -17.55 -0.18 1.28 16 21 C -0.13 -1.33 3.19 -89.80 -0.29 -1.62 16 22 C -0.13 -1.39 6.16 -25.77 -0.16 -1.55 16 23 C -0.14 -1.26 8.09 -25.77 -0.21 -1.47 16 24 C -0.13 -1.15 6.95 -25.91 -0.18 -1.33 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 31 H 0.03 0.50 6.73 -51.93 -0.35 0.15 16 32 H 0.34 4.29 7.91 -39.30 -0.31 3.98 16 33 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.15 1.77 7.35 -52.49 -0.39 1.38 16 37 H 0.09 0.91 8.00 -51.93 -0.42 0.50 16 38 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.08 0.90 7.95 -51.93 -0.41 0.49 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 0.67 8.01 -51.93 -0.42 0.26 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -31.12 349.44 -10.35 -41.47 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.27 Total: 1.02 kcal Atomic # 6 Polarization: -18.60 SS G_CDS: -3.32 Total: -21.91 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: -0.01 Total: -42.71 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.12 -10.35 -41.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280800514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.206 kcal (2) G-P(sol) polarization free energy of solvation -31.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds