Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 120.00293 * 2 1 4 4 H 1.48505 * 109.46972 * 240.00193 * 3 2 1 5 5 H 1.48494 * 109.47375 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47040 * 120.00572 * 3 2 1 7 7 C 1.37881 * 119.99311 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99553 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00552 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47171 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47082 * 179.97438 * 10 9 7 12 12 N 1.46899 * 109.47270 * 180.02562 * 11 10 9 13 13 C 1.46901 * 111.00204 * 185.30138 * 12 11 10 14 14 H 1.09007 * 109.46990 * 32.21245 * 13 12 11 15 15 C 1.50690 * 109.47290 * 152.21680 * 13 12 11 16 16 C 1.38678 * 120.41771 * 219.99523 * 15 13 12 17 17 C 1.38626 * 118.42261 * 180.02562 * 16 15 13 18 18 C 1.38233 * 119.16041 * 0.02562 * 17 16 15 19 19 N 1.31859 * 120.76141 * 359.97438 * 18 17 16 20 20 C 1.31885 * 121.72739 * 359.70477 * 19 18 17 21 21 C 1.53000 * 109.46796 * 272.21753 * 13 12 11 22 22 C 1.53788 * 113.61619 * 83.55395 * 21 13 12 23 23 C 1.54050 * 86.98488 * 140.01889 * 22 21 13 24 24 C 1.53784 * 113.61212 * 181.15977 * 21 13 12 25 25 H 0.97000 * 119.99300 * 359.97438 * 1 2 3 26 26 H 1.09006 * 109.46648 * 59.99876 * 9 7 2 27 27 H 1.08994 * 109.47128 * 300.00067 * 9 7 2 28 28 H 1.09006 * 109.47150 * 60.00533 * 10 9 7 29 29 H 1.08994 * 109.47435 * 300.00228 * 10 9 7 30 30 H 1.09000 * 109.46743 * 59.99901 * 11 10 9 31 31 H 1.09004 * 109.47093 * 300.00306 * 11 10 9 32 32 H 1.00890 * 111.00283 * 61.34306 * 12 11 10 33 33 H 1.08000 * 120.78952 * 359.97438 * 16 15 13 34 34 H 1.07994 * 120.42232 * 180.02562 * 17 16 15 35 35 H 1.07997 * 119.61753 * 179.97438 * 18 17 16 36 36 H 1.07998 * 119.61822 * 180.30637 * 20 19 18 37 37 H 1.08999 * 112.85215 * 312.35590 * 21 13 12 38 38 H 1.09004 * 113.61193 * 254.61379 * 22 21 13 39 39 H 1.09004 * 113.61360 * 25.51046 * 22 21 13 40 40 H 1.09000 * 113.61762 * 220.02142 * 23 22 21 41 41 H 1.08996 * 113.69170 * 89.12953 * 23 22 21 42 42 H 1.08997 * 113.61600 * 334.47640 * 24 21 13 43 43 H 1.08996 * 113.61723 * 105.39057 * 24 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2844 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4800 -4.9872 -0.0012 12 7 2.4345 -6.1038 -0.0018 13 6 1.7386 -7.3913 -0.1279 14 1 0.8411 -7.2615 -0.7329 15 6 2.6501 -8.3923 -0.7896 16 6 2.1512 -9.2833 -1.7279 17 6 3.0263 -10.1869 -2.3104 18 6 4.3577 -10.1702 -1.9389 19 7 4.7971 -9.3084 -1.0429 20 6 3.9946 -8.4307 -0.4729 21 6 1.3478 -7.8980 1.2618 22 6 0.0311 -7.3018 1.7872 23 6 -0.2888 -8.7039 2.3394 24 6 0.6347 -9.2604 1.2427 25 1 -0.4849 0.8401 0.0004 26 1 0.6239 -2.5567 -0.8903 27 1 0.6246 -2.5572 0.8896 28 1 2.8724 -3.6049 0.8878 29 1 2.8711 -3.6041 -0.8922 30 1 0.8524 -5.0447 -0.8905 31 1 0.8543 -5.0450 0.8895 32 1 3.0134 -6.0851 0.8243 33 1 1.1055 -9.2741 -1.9978 34 1 2.6725 -10.8949 -3.0452 35 1 5.0459 -10.8712 -2.3878 36 1 4.3918 -7.7371 0.2533 37 1 2.1678 -7.8444 1.9780 38 1 0.1716 -6.5476 2.5616 39 1 -0.6473 -6.9781 0.9978 40 1 -1.3328 -8.9929 2.2191 41 1 0.0831 -8.8719 3.3501 42 1 0.1209 -9.4712 0.3049 43 1 1.2620 -10.0863 1.5779 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280800514.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = 17.046112 kcal Electronic energy + Delta-G solvation = -20678.394380 eV Core-core repulsion = 17722.378448 eV Total energy + Delta-G solvation = -2956.015932 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 274.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.40605 -39.84267 -37.29124 -35.54350 -33.99069 -33.00476 -31.74345 -28.87139 -27.11924 -26.46885 -24.85189 -24.64246 -23.83125 -22.10613 -21.74055 -20.27220 -18.49273 -17.98980 -17.20886 -17.03215 -16.58605 -16.52917 -16.12056 -15.61384 -15.22807 -14.80762 -14.56286 -14.29611 -14.12238 -13.90224 -13.65385 -13.35886 -13.28651 -13.09301 -12.73319 -12.60602 -12.52322 -12.39230 -12.16934 -11.85301 -11.49375 -11.42358 -11.33438 -11.22859 -11.04227 -10.64114 -10.54272 -10.29633 -9.79781 -9.22707 -8.19885 -6.30595 0.28770 0.44396 1.39826 1.42860 1.50800 2.41153 2.91885 3.13171 3.21152 3.47535 3.70915 3.75665 3.78846 3.94545 4.05789 4.14611 4.17309 4.22826 4.35065 4.38237 4.48419 4.58703 4.74403 4.75861 4.81966 4.84112 4.86910 4.97909 5.02913 5.06205 5.06497 5.12896 5.25940 5.27282 5.30017 5.44220 5.52291 5.56022 5.77046 5.86262 5.87350 6.09256 6.28521 6.46719 6.86185 7.13805 7.38471 8.91738 Molecular weight = 274.17amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.003576 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.917042 B = 7827.101147 C = 8808.783773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.545 4.545 8 H 0.057 0.943 9 C 0.027 3.973 10 C -0.092 4.092 11 C 0.077 3.923 12 N -0.685 5.685 13 C 0.144 3.856 14 H 0.084 0.916 15 C -0.112 4.112 16 C -0.079 4.079 17 C -0.167 4.167 18 C 0.075 3.925 19 N -0.516 5.516 20 C 0.100 3.900 21 C -0.131 4.131 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.121 4.121 25 H 0.264 0.736 26 H -0.010 1.010 27 H -0.007 1.007 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.033 0.967 32 H 0.345 0.655 33 H 0.149 0.851 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.148 0.852 37 H 0.090 0.910 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.087 0.913 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -23.946 -0.027 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.192 1.192 7 C -0.583 4.583 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.130 4.130 11 C -0.052 4.052 12 N -0.315 5.315 13 C 0.034 3.966 14 H 0.102 0.898 15 C -0.115 4.115 16 C -0.106 4.106 17 C -0.186 4.186 18 C -0.082 4.082 19 N -0.225 5.225 20 C -0.057 4.057 21 C -0.150 4.150 22 C -0.179 4.179 23 C -0.173 4.173 24 C -0.159 4.159 25 H 0.072 0.928 26 H 0.009 0.991 27 H 0.011 0.989 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.164 0.836 33 H 0.167 0.833 34 H 0.180 0.820 35 H 0.191 0.809 36 H 0.166 0.834 37 H 0.109 0.891 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.751 -23.777 -0.471 23.940 hybrid contribution -1.042 1.209 0.670 1.731 sum 1.708 -22.568 0.199 22.633 Atomic orbital electron populations 1.70089 1.07732 1.27801 1.51703 1.25968 0.95784 1.03289 0.94728 0.85525 0.78318 0.78191 0.79174 1.19308 1.20701 1.19153 1.21687 0.93493 0.92557 1.50540 0.92441 1.18946 0.94376 0.92995 0.94728 1.21365 0.98005 0.93202 1.00467 1.21833 0.93696 0.89721 0.99909 1.60512 1.23313 1.01349 1.46284 1.20412 0.94396 0.86921 0.94899 0.89797 1.20776 0.95540 0.97260 0.97905 1.21743 1.01310 0.93613 0.93901 1.22404 0.94345 1.00376 1.01503 1.23202 0.95226 0.96233 0.93524 1.67678 1.39935 1.05191 1.09648 1.22547 0.90145 0.95097 0.97873 1.23253 0.97464 0.98054 0.96272 1.23047 0.96977 0.97341 1.00559 1.22843 1.00320 0.95363 0.98807 1.22795 0.97954 0.95597 0.99526 0.92768 0.99146 0.98911 0.93220 0.93427 0.92293 0.94859 0.83649 0.83317 0.81957 0.80889 0.83441 0.89133 0.92414 0.90456 0.90757 0.89897 0.89454 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.33 13.29 21.45 0.28 -57.04 16 2 C 0.00 0.00 5.46 84.65 0.46 0.46 16 3 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.03 1.45 4.97 29.85 0.15 1.60 16 10 C -0.09 -3.85 5.46 30.59 0.17 -3.68 16 11 C 0.08 2.56 5.42 86.30 0.47 3.03 16 12 N -0.68 -18.49 5.64 -495.45 -2.79 -21.28 16 13 C 0.14 3.16 2.11 44.17 0.09 3.25 16 14 H 0.08 1.90 7.34 -2.38 -0.02 1.88 16 15 C -0.11 -2.42 4.44 -19.78 -0.09 -2.50 16 16 C -0.08 -1.40 9.60 22.47 0.22 -1.19 16 17 C -0.17 -2.60 10.11 22.36 0.23 -2.38 16 18 C 0.07 1.42 11.18 84.69 0.95 2.36 16 19 N -0.52 -12.85 10.36 -195.84 -2.03 -14.88 16 20 C 0.10 2.43 10.50 84.67 0.89 3.31 16 21 C -0.13 -2.49 3.19 -10.26 -0.03 -2.52 16 22 C -0.14 -2.86 6.16 31.21 0.19 -2.67 16 23 C -0.14 -2.20 8.09 31.21 0.25 -1.95 16 24 C -0.12 -1.92 6.95 31.12 0.22 -1.70 16 25 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 26 H -0.01 -0.57 8.14 -2.38 -0.02 -0.59 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.06 2.03 7.92 -2.39 -0.02 2.01 16 31 H 0.03 1.09 6.73 -2.39 -0.02 1.07 16 32 H 0.34 8.66 7.91 -89.70 -0.71 7.96 16 33 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 34 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.15 3.49 7.35 -2.91 -0.02 3.47 16 37 H 0.09 1.75 8.00 -2.39 -0.02 1.74 16 38 H 0.06 1.30 8.12 -2.38 -0.02 1.28 16 39 H 0.08 1.65 7.95 -2.39 -0.02 1.63 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.09 1.27 8.01 -2.39 -0.02 1.25 16 43 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -67.19 349.44 2.14 -65.05 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.26 Total: 17.25 kcal Atomic # 6 Polarization: -40.39 SS G_CDS: 4.39 Total: -36.00 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -4.54 Total: -93.20 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -67.19 2.14 -65.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280800514.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.096 kcal (2) G-P(sol) polarization free energy of solvation -67.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds