Wall clock time and date at job start Mon Mar 30 2020 01:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35700 * 116.99601 * 2 1 4 4 C 1.38642 * 120.15399 * 359.97438 * 3 2 1 5 5 C 1.38112 * 120.09525 * 179.97438 * 4 3 2 6 6 C 1.50697 * 119.80456 * 180.02562 * 5 4 3 7 7 N 1.46905 * 109.47066 * 90.00140 * 6 5 4 8 8 C 1.46901 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 11 11 C 1.50701 * 109.46820 * 179.97438 * 10 9 8 12 12 H 1.08000 * 120.00070 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00019 * 179.97438 * 11 10 9 14 14 N 1.31518 * 119.99993 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 120.00130 * 0.02562 * 13 11 10 16 16 H 1.48493 * 109.47108 * 89.99504 * 15 13 11 17 17 H 1.48498 * 109.47097 * 209.99712 * 15 13 11 18 18 H 1.48499 * 109.46508 * 329.99366 * 15 13 11 19 19 C 1.38514 * 120.38766 * 0.27608 * 5 4 3 20 20 C 1.37819 * 120.30069 * 359.49065 * 19 5 4 21 21 C 1.39723 * 119.89902 * 0.48504 * 20 19 5 22 22 C 1.43195 * 120.19403 * 179.74708 * 21 20 19 23 23 N 3.53306 * 165.92439 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.47150 * 299.99927 * 1 2 3 25 25 H 1.09001 * 109.46848 * 59.99953 * 1 2 3 26 26 H 1.08996 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08000 * 119.95445 * 359.97438 * 4 3 2 28 28 H 1.09001 * 109.47558 * 330.00303 * 6 5 4 29 29 H 1.08998 * 109.47216 * 209.99966 * 6 5 4 30 30 H 1.00901 * 110.99869 * 56.04737 * 7 6 5 31 31 H 1.09004 * 109.47031 * 299.99620 * 8 7 6 32 32 H 1.08995 * 109.47111 * 59.99900 * 8 7 6 33 33 H 1.08995 * 109.46615 * 299.99641 * 9 8 7 34 34 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 35 35 H 1.08993 * 109.47740 * 299.99810 * 10 9 8 36 36 H 1.09005 * 109.47573 * 59.99976 * 10 9 8 37 37 H 0.96999 * 120.00009 * 180.02562 * 14 13 11 38 38 H 1.08000 * 119.84871 * 179.72021 * 19 5 4 39 39 H 1.08001 * 120.05457 * 180.23410 * 20 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2091 0.0000 4 6 1.2930 2.3739 -0.0005 5 6 1.9212 3.6038 0.0000 6 6 1.0973 4.8657 0.0000 7 7 0.8291 5.2754 1.3850 8 6 0.0258 6.5046 1.4242 9 6 -0.2318 6.8993 2.8798 10 6 -1.0680 8.1799 2.9206 11 6 -1.3223 8.5683 4.3543 12 1 -0.9267 7.9626 5.1562 13 6 -2.0591 9.6976 4.6423 14 7 -2.2814 10.0363 5.8935 15 14 -2.7427 10.7457 3.2554 16 1 -4.0963 10.2584 2.8877 17 1 -2.8296 12.1599 3.7002 18 1 -1.8454 10.6521 2.0758 19 6 3.3040 3.6844 -0.0047 20 6 4.0674 2.5369 0.0006 21 6 3.4447 1.2861 0.0006 22 6 4.2317 0.0898 0.0006 23 7 4.8561 -0.8592 -0.0004 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 0.2144 2.3193 -0.0014 28 1 0.1536 4.6835 -0.5142 29 1 1.6441 5.6566 -0.5134 30 1 1.6885 5.3880 1.9016 31 1 0.5648 7.3071 0.9205 32 1 -0.9252 6.3334 0.9200 33 1 -0.7706 6.0970 3.3838 34 1 0.7194 7.0707 3.3836 35 1 -0.5289 8.9821 2.4167 36 1 -2.0193 8.0090 2.4166 37 1 -2.8001 10.8305 6.0962 38 1 3.7861 4.6508 -0.0088 39 1 5.1453 2.6044 0.0008 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281597048.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:19 Heat of formation + Delta-G solvation = 4.515290 kcal Electronic energy + Delta-G solvation = -19378.376743 eV Core-core repulsion = 16285.984339 eV Total energy + Delta-G solvation = -3092.392403 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 274.142 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -40.75405 -38.29781 -36.97724 -36.14409 -33.82280 -32.33473 -30.94884 -30.63706 -27.99763 -27.29502 -25.24209 -22.74749 -22.37050 -21.95160 -20.13170 -19.53916 -17.67134 -16.95823 -16.66248 -16.23298 -15.74448 -14.97034 -14.85964 -14.67807 -14.44961 -14.15825 -13.98964 -13.79164 -13.35695 -13.01177 -12.74288 -12.68325 -12.49428 -12.16856 -12.03358 -11.77914 -11.66038 -11.44481 -11.31755 -10.99915 -10.82713 -9.99672 -9.77629 -9.66376 -9.27287 -9.19145 -8.67451 -8.55206 -8.37130 -6.05269 -4.03316 0.42186 0.99376 2.49493 2.66749 2.75557 3.28800 3.36295 3.39050 3.51097 3.64451 4.21848 4.37513 4.43549 4.52446 4.69665 4.77884 4.82856 4.89886 5.07523 5.16895 5.18947 5.28325 5.31369 5.48956 5.59934 5.66825 5.75087 5.83611 6.09610 6.16193 6.25123 6.47031 6.50791 6.83056 6.87232 7.06230 7.30135 7.32650 7.36972 7.45364 7.78591 8.53482 9.00291 9.57090 11.08269 Molecular weight = 274.14amu Principal moments of inertia in cm(-1) A = 0.031938 B = 0.002647 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.490359 B =10575.750148 C =10793.986630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.175 3.825 4 C -0.188 4.188 5 C -0.005 4.005 6 C 0.088 3.912 7 N -0.685 5.685 8 C 0.056 3.944 9 C -0.100 4.100 10 C -0.013 4.013 11 C -0.520 4.520 12 H 0.072 0.928 13 C 0.065 3.935 14 N -0.904 5.904 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.266 1.266 19 C -0.153 4.153 20 C -0.031 4.031 21 C -0.071 4.071 22 C 0.267 3.733 23 N -0.426 5.426 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.343 0.657 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.013 0.987 36 H 0.011 0.989 37 H 0.263 0.737 38 H 0.134 0.866 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.175 -15.262 -16.339 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.224 6.224 3 C 0.127 3.873 4 C -0.207 4.207 5 C -0.007 4.007 6 C -0.041 4.041 7 N -0.316 5.316 8 C -0.072 4.072 9 C -0.138 4.138 10 C -0.051 4.051 11 C -0.558 4.558 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.543 5.543 15 Si 0.708 3.292 16 H -0.203 1.203 17 H -0.214 1.214 18 H -0.191 1.191 19 C -0.172 4.172 20 C -0.052 4.052 21 C -0.075 4.075 22 C -0.048 4.048 23 N -0.102 5.102 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.159 0.841 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.161 0.839 31 H 0.045 0.955 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.152 0.848 39 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 8.562 -17.205 -16.162 25.111 hybrid contribution -0.329 1.811 -0.815 2.013 sum 8.232 -15.394 -16.977 24.351 Atomic orbital electron populations 1.23208 0.77167 1.04516 1.02227 1.86071 1.22405 1.26384 1.87586 1.18923 0.90341 0.84951 0.93131 1.21087 1.00727 0.90791 1.08086 1.19909 0.93560 0.94621 0.92600 1.21011 0.98715 0.92599 0.91745 1.60577 1.23979 1.36000 1.11021 1.22195 0.96909 0.88353 0.99735 1.21447 1.00498 0.99243 0.92584 1.19541 0.94723 0.92874 0.97924 1.21148 1.33376 1.09988 0.91258 0.91016 1.25055 0.95820 0.97396 0.95365 1.69919 1.40488 1.26158 1.17747 0.86761 0.79746 0.79640 0.83007 1.20313 1.21437 1.19090 1.20937 0.93025 0.98638 1.04563 1.20977 1.00288 0.89501 0.94388 1.15293 0.88168 0.88560 1.15492 1.25364 0.93209 0.92750 0.93443 1.81213 1.09284 1.10033 1.09634 0.91620 0.92056 0.87901 0.84068 0.89848 0.93760 0.83929 0.95509 0.91324 0.91901 0.92926 0.96835 0.97063 0.92755 0.84771 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.98 9.93 -18.80 -0.19 -3.16 16 3 C 0.18 1.64 6.69 -38.71 -0.26 1.38 16 4 C -0.19 -1.58 8.67 -39.48 -0.34 -1.93 16 5 C -0.01 -0.05 5.40 -104.57 -0.56 -0.61 16 6 C 0.09 0.80 5.80 -4.97 -0.03 0.77 16 7 N -0.68 -8.09 6.49 -115.05 -0.75 -8.84 16 8 C 0.06 0.81 5.69 -3.82 -0.02 0.79 16 9 C -0.10 -1.86 5.41 -26.73 -0.14 -2.00 16 10 C -0.01 -0.29 4.04 -27.88 -0.11 -0.41 16 11 C -0.52 -14.65 9.66 -34.44 -0.33 -14.98 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 14 N -0.90 -27.76 13.96 55.43 0.77 -26.98 16 15 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 19 C -0.15 -1.11 9.67 -39.63 -0.38 -1.50 16 20 C -0.03 -0.23 9.76 -39.18 -0.38 -0.61 16 21 C -0.07 -0.67 5.75 -106.69 -0.61 -1.28 16 22 C 0.27 3.06 14.87 -22.47 -0.33 2.72 16 23 N -0.43 -5.75 18.54 41.84 0.78 -4.97 16 24 H 0.07 0.36 7.66 -51.93 -0.40 -0.03 16 25 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 26 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.14 1.03 6.30 -52.49 -0.33 0.69 16 28 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 29 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.34 3.86 8.72 -39.29 -0.34 3.52 16 31 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 36 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.14 0.73 8.06 -52.49 -0.42 0.31 16 LS Contribution 338.23 15.07 5.10 5.10 Total: -1.00 -32.64 338.23 -7.20 -39.85 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.62 Total: -2.97 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -2.63 Total: -14.74 kcal Atomic # 7 Polarization: -41.59 SS G_CDS: 0.80 Total: -40.79 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.19 Total: -3.16 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -32.64 -7.20 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281597048.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.363 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds